(used for variant description)
(last modified November 9, 2023)
This file was created to facilitate the description of sequence variants on transcript NM_016235.1 in the GPRC5B gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000016.9, covering GPRC5B transcript NM_016235.1.
(upstream sequence)
. . . . g.5044
cgcaggcgggcgtgcgtggagcgggggccgcggccgcgccgcag c.-61
. . . . . . | 02 g.16984
agatgtgactcgggccgaaggccagctggagcgtcggcgctgcggggccgcgggggtcg | a c.-1
. . . . . . g.17044
ATGTTCGTGGCATCAGAGAGAAAGATGAGAGCTCACCAGGTGCTCACCTTCCTCCTGCTC c.60
M F V A S E R K M R A H Q V L T F L L L p.20
. . . . . . g.17104
TTCGTGATCACCTCGGTGGCCTCTGAAAACGCCAGCACATCCCGAGGCTGTGGGCTGGAC c.120
F V I T S V A S E N A S T S R G C G L D p.40
. . . . . . g.17164
CTCCTCCCTCAGTACGTGTCCCTGTGCGACCTGGACGCCATCTGGGGCATTGTGGTGGAG c.180
L L P Q Y V S L C D L D A I W G I V V E p.60
. . . . . . g.17224
GCGGTGGCCGGGGCGGGCGCCCTGATCACACTGCTCCTGATGCTCATCCTCCTGGTGCGG c.240
A V A G A G A L I T L L L M L I L L V R p.80
. . . . . . g.17284
CTGCCCTTCATCAAGGAGAAGGAGAAGAAGAGCCCTGTGGGCCTCCACTTTCTGTTCCTC c.300
L P F I K E K E K K S P V G L H F L F L p.100
. . . . . . g.17344
CTGGGGACCCTGGGCCTCTTTGGGCTGACGTTTGCCTTCATCATCCAGGAGGACGAGACC c.360
L G T L G L F G L T F A F I I Q E D E T p.120
. . . . . . g.17404
ATCTGCTCTGTCCGCCGCTTCCTCTGGGGCGTCCTCTTTGCGCTCTGCTTCTCCTGCCTG c.420
I C S V R R F L W G V L F A L C F S C L p.140
. . . . . . g.17464
CTGAGCCAGGCATGGCGCGTGCGGAGGCTGGTGCGGCATGGCACGGGCCCCGCGGGCTGG c.480
L S Q A W R V R R L V R H G T G P A G W p.160
. . . . . . g.17524
CAGCTGGTGGGCCTGGCGCTGTGCCTGATGCTGGTGCAAGTCATCATCGCTGTGGAGTGG c.540
Q L V G L A L C L M L V Q V I I A V E W p.180
. . . . . . g.17584
CTGGTGCTCACCGTGCTGCGTGACACAAGGCCAGCCTGCGCCTACGAGCCCATGGACTTT c.600
L V L T V L R D T R P A C A Y E P M D F p.200
. . . . . . g.17644
GTGATGGCCCTCATCTACGACATGGTACTGCTTGTGGTCACCCTGGGGCTGGCCCTCTTC c.660
V M A L I Y D M V L L V V T L G L A L F p.220
. . . . . . g.17704
ACTCTGTGCGGCAAGTTCAAGAGGTGGAAGCTGAACGGGGCCTTCCTCCTCATCACAGCC c.720
T L C G K F K R W K L N G A F L L I T A p.240
. . . . . . g.17764
TTCCTCTCTGTGCTCATCTGGGTGGCCTGGATGACCATGTACCTCTTCGGCAATGTCAAG c.780
F L S V L I W V A W M T M Y L F G N V K p.260
. . . . . . g.17824
CTGCAGCAGGGGGATGCCTGGAACGACCCCACCTTGGCCATCACGCTGGCGGCCAGCGGC c.840
L Q Q G D A W N D P T L A I T L A A S G p.280
. . . . . . g.17884
TGGGTCTTCGTCATCTTCCACGCCATCCCTGAGATCCACTGCACCCTTCTGCCAGCCCTG c.900
W V F V I F H A I P E I H C T L L P A L p.300
. . . . . . g.17944
CAGGAGAACACGCCCAACTACTTCGACACGTCGCAGCCCAGGATGCGGGAGACGGCCTTC c.960
Q E N T P N Y F D T S Q P R M R E T A F p.320
. . . . . . g.18004
GAGGAGGACGTGCAGCTGCCGCGGGCCTATATGGAGAACAAGGCCTTCTCCATGGATGAA c.1020
E E D V Q L P R A Y M E N K A F S M D E p.340
. | 03 . . . . . g.27906
CACAATGCAG | CTCTCCGAACAGCAGGATTTCCCAACGGCAGCTTGGGAAAAAGACCCAGT c.1080
H N A A | L R T A G F P N G S L G K R P S p.360
. . . . . . g.27966
GGCAGCTTGGGGAAAAGACCCAGCGCTCCGTTTAGAAGCAACGTGTATCAGCCAACTGAG c.1140
G S L G K R P S A P F R S N V Y Q P T E p.380
. . | 04. . . . g.29318
ATGGCCGTCGTGCTCAACGGTGGGACC | ATCCCAACTGCTCCGCCAAGTCACACAGGAAGA c.1200
M A V V L N G G T | I P T A P P S H T G R p.400
. g.29330
CACCTTTGGTGA c.1212
H L W X p.403
. . . . . . g.29390
aagactttaagttccagagaatcagaatttctcttaccgatttgcctccctggctgtgtc c.*60
. . . . . . g.29450
tttcttgagggagaaatcggtaacagttgccgaaccaggccgcctcacagccaggaaatt c.*120
. . . . . . g.29510
tggaaatcctagccaaggggatttcgtgtaaatgtgaacactgacgaactgaaaagctaa c.*180
. . . . . . g.29570
caccgactgcccgcccctcccctgccacacacacagacacgtaataccagaccaacctca c.*240
. . . . . . g.29630
atccccgcaaactaaagcaaagctaattgcaaatagtattaggctcactggaaaatgtgg c.*300
. . . . . . g.29690
ctgggaagactgtttcatcctctgggggtagaacagaaccaaattcacagctggtgggcc c.*360
. . . . . . g.29750
agactggtgttggttggaggtggggggctcccactcttatcacctctccccagcaagtgc c.*420
. . . . . . g.29810
tggaccccaggtagcctcttggagatgaccgttgcgttgaggacaaatggggactttgcc c.*480
. . . . . . g.29870
accggcttgcctggtggtttgcacatttcaggggggtcaggagagttaaggaggttgtgg c.*540
. . . . . . g.29930
gtgggattccaaggtgaggcccaactgaatcgtggggtgagctttatagccagtagaggt c.*600
. . . . . . g.29990
ggagggaccctggcatgtgccaaagaagaggccctctgggtgatgaagtgaccatcacat c.*660
. . . . . . g.30050
ttggaaagtgatcaaccactgttccttctatggggctcttgctctagtgtctatggtgag c.*720
. . . . . . g.30110
aacacaggccccgccccttcccttgtagagccatagaaatattctggcttggggcagcag c.*780
. . . . . . g.30170
tcccttcttcccttgatcatctcgccctgttcctacacttacgggtgtatctccaaatcc c.*840
. . . . . . g.30230
tctcccaattttattcccttattcatttcaagagctccaatggggtctccagctgaaagc c.*900
. . . . . . g.30290
ccctccgggaggcaggttggaaggcaggcaccacggcaggttttccgcgatgatgtcacc c.*960
. . . . . . g.30350
tagcagggcttcaggggttcccactaggatgcagagatgacctctcgctgcctcacaagc c.*1020
. . . . . . g.30410
agtgacacctcgggtcctttccgttgctatggtgaaaattcctggatggaatggatcaca c.*1080
. . . . . . g.30470
tgagggtttcttgttgcttttggagggtgtgggggatattttgttttggtttttctgcag c.*1140
. . . . . . g.30530
gttccatgaaaacagcccttttccaagcccattgtttctgtcatggtttccatctgtcct c.*1200
. . . . . . g.30590
gagcaagtcattcctttgttatttagcatttcgaacatctcggccattcaaagcccccat c.*1260
. . . . . . g.30650
gttctctgcactgtttggccagcataacctctagcatcgattcaaagcagagttttaacc c.*1320
. . . . . . g.30710
tgacggcatggaatgtataaatgagggtgggtccttctgcagatactctaatcactacat c.*1380
. . . . . . g.30770
tgctttttctataaaactacccataagcctttaacctttaaagaaaaatgaaaaaggtta c.*1440
. . . . . . g.30830
gtgtttgggggccgggggaggactgaccgcttcataagccagtacgtctgagctgagtat c.*1500
. . g.30859
gtttcaataaaccttttgatatttctcaa c.*1529
(downstream sequence)
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