(used for variant description)
(last modified October 26, 2014)
This file was created to facilitate the description of sequence variants on transcript NM_000838.3 in the GRM1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_012839.1, covering GRM1 transcript NM_000838.3.
(upstream sequence)
. . . . . g.5050
agtgctgaagaaagagggcactagtgtacagcccagatcgcatccttgca c.-421
. . . . . . g.5110
ccgtctggattagagctgaggcgtctgcaagccgagcgtggccacggtcctctggccccg c.-361
. . . . | 02 . . g.6572
ggaccatagcgctgtctaccccgactcaggtactcag | cagcatctagctcaccgctgcca c.-301
. . . . . . g.6632
acacgacttccactgtactcttgatcaatttaccttgatgcactaccggtgaagaacggg c.-241
. . . . . . g.6692
gactcgaattcccttacaaacgcctccagcttgtagaggcggtcgtggaggacccagagg c.-181
. . . . . . g.6752
aggagacgaaggggaaggaggcggtggtggaggaggcaaaggccttggacgaccattgtt c.-121
. . . . . . g.6812
ggcgaggggcaccactccgggagaggcggcgctgggcgtcttgggggtgcgcgccgggag c.-61
. . . . . . g.6872
cctgcagcgggaccagcgtgggaacgcggctggcaggctgtggacctcgtcctcaccacc c.-1
. . . . . . g.6932
ATGGTCGGGCTCCTTTTGTTTTTTTTCCCAGCGATCTTTTTGGAGGTGTCCCTTCTCCCC c.60
M V G L L L F F F P A I F L E V S L L P p.20
. . . . . . g.6992
AGAAGCCCCGGCAGGAAAGTGTTGCTGGCAGGAGCGTCGTCTCAGCGCTCGGTGGCCAGA c.120
R S P G R K V L L A G A S S Q R S V A R p.40
. . . . . . g.7052
ATGGACGGAGATGTCATCATTGGAGCCCTCTTCTCAGTCCATCACCAGCCTCCGGCCGAG c.180
M D G D V I I G A L F S V H H Q P P A E p.60
. . . . . . g.7112
AAAGTGCCCGAGAGGAAGTGTGGGGAGATCAGGGAGCAGTATGGCATCCAGAGGGTGGAG c.240
K V P E R K C G E I R E Q Y G I Q R V E p.80
. . . . . . g.7172
GCCATGTTCCACACGTTGGATAAGATCAACGCGGACCCGGTCCTCCTGCCCAACATCACC c.300
A M F H T L D K I N A D P V L L P N I T p.100
. . . . . . g.7232
CTGGGCAGTGAGATCCGGGACTCCTGCTGGCACTCTTCCGTGGCTCTGGAACAGAGCATT c.360
L G S E I R D S C W H S S V A L E Q S I p.120
. . . . . . g.7292
GAGTTCATTAGGGACTCTCTGATTTCCATTCGAGATGAGAAGGATGGGATCAACCGGTGT c.420
E F I R D S L I S I R D E K D G I N R C p.140
. . . . . . g.7352
CTGCCTGACGGCCAGTCCCTCCCCCCAGGCAGGACTAAGAAGCCCATTGCGGGAGTGATC c.480
L P D G Q S L P P G R T K K P I A G V I p.160
. . . . . . g.7412
GGTCCCGGCTCCAGCTCTGTAGCCATTCAAGTGCAGAACCTGCTCCAGCTCTTCGACATC c.540
G P G S S S V A I Q V Q N L L Q L F D I p.180
. . . . . . g.7472
CCCCAGATCGCTTATTCAGCCACAAGCATCGACCTGAGTGACAAAACTTTGTACAAATAC c.600
P Q I A Y S A T S I D L S D K T L Y K Y p.200
. . . . . . g.7532
TTCCTGAGGGTTGTCCCTTCTGACACTTTGCAGGCAAGGGCCATGCTTGACATAGTCAAA c.660
F L R V V P S D T L Q A R A M L D I V K p.220
. . . . | 03 . . g.136722
CGTTACAATTGGACCTATGTCTCTGCAGTCCACACGGAAG | GGAATTATGGGGAGAGCGGA c.720
R Y N W T Y V S A V H T E G | N Y G E S G p.240
. . . . . . g.136782
ATGGACGCTTTCAAAGAGCTGGCTGCCCAGGAAGGCCTCTGTATCGCCCATTCTGACAAA c.780
M D A F K E L A A Q E G L C I A H S D K p.260
. . . . . . g.136842
ATCTACAGCAACGCTGGGGAGAAGAGCTTTGACCGACTCTTGCGCAAACTCCGAGAGAGG c.840
I Y S N A G E K S F D R L L R K L R E R p.280
. . . . . . g.136902
CTTCCCAAGGCTAGAGTGGTGGTCTGCTTCTGTGAAGGCATGACAGTGCGAGGACTCCTG c.900
L P K A R V V V C F C E G M T V R G L L p.300
. . . . . | 04 . g.281975
AGCGCCATGCGGCGCCTTGGCGTCGTGGGCGAGTTCTCACTCATTGGAAG | TGATGGATGG c.960
S A M R R L G V V G E F S L I G S | D G W p.320
. . . . . . g.282035
GCAGACAGAGATGAAGTCATTGAAGGTTATGAGGTGGAAGCCAACGGGGGAATCACGATA c.1020
A D R D E V I E G Y E V E A N G G I T I p.340
. . . . . . g.282095
AAGCTGCAGTCTCCAGAGGTCAGGTCATTTGATGATTATTTCCTGAAACTGAGGCTGGAC c.1080
K L Q S P E V R S F D D Y F L K L R L D p.360
. . . . . . g.282155
ACTAACACGAGGAATCCCTGGTTCCCTGAGTTCTGGCAACATCGGTTCCAGTGCCGCCTT c.1140
T N T R N P W F P E F W Q H R F Q C R L p.380
. . . . | 05 . . g.329618
CCAGGACACCTTCTGGAAAATCCCAACTTTAAACGAATCTGCACAG | GCAATGAAAGCTTA c.1200
P G H L L E N P N F K R I C T G | N E S L p.400
. . . . . . g.329678
GAAGAAAACTATGTCCAGGACAGTAAGATGGGGTTTGTCATCAATGCCATCTATGCCATG c.1260
E E N Y V Q D S K M G F V I N A I Y A M p.420
. . . . . . g.329738
GCACATGGGCTGCAGAACATGCACCATGCCCTCTGCCCTGGCCACGTGGGCCTCTGCGAT c.1320
A H G L Q N M H H A L C P G H V G L C D p.440
. . . . . . g.329798
GCCATGAAGCCCATCGACGGCAGCAAGCTGCTGGACTTCCTCATCAAGTCCTCATTCATT c.1380
A M K P I D G S K L L D F L I K S S F I p.460
. . . . . | 06 . g.334887
GGAGTATCTGGAGAGGAGGTGTGGTTTGATGAGAAAGGAGACGCTCCTGGAAG | GTATGAT c.1440
G V S G E E V W F D E K G D A P G R | Y D p.480
. . . . . . g.334947
ATCATGAATCTGCAGTACACTGAAGCTAATCGCTATGACTATGTGCACGTTGGAACCTGG c.1500
I M N L Q Y T E A N R Y D Y V H V G T W p.500
. . . . . . g.335007
CATGAAGGAGTGCTGAACATTGATGATTACAAAATCCAGATGAACAAGAGTGGAGTGGTG c.1560
H E G V L N I D D Y K I Q M N K S G V V p.520
. . . . | 07 . . g.364262
CGGTCTGTGTGCAGTGAGCCTTGCTTAAAGGGCCAGATTAAG | GTTATACGGAAAGGAGAA c.1620
R S V C S E P C L K G Q I K | V I R K G E p.540
. . . . . . g.364322
GTGAGCTGCTGCTGGATTTGCACGGCCTGCAAAGAGAATGAATATGTGCAAGATGAGTTC c.1680
V S C C W I C T A C K E N E Y V Q D E F p.560
. . . . | 08 . g.376134
ACCTGCAAAGCTTGTGACTTGGGATGGTGGCCCAATGCAGATCTAACAG | GCTGTGAGCCC c.1740
T C K A C D L G W W P N A D L T G | C E P p.580
. . . . . . g.376194
ATTCCTGTGCGCTATCTTGAGTGGAGCAACATCGAATCCATTATAGCCATCGCCTTTTCA c.1800
I P V R Y L E W S N I E S I I A I A F S p.600
. . . . . . g.376254
TGCCTGGGAATCCTTGTTACCTTGTTTGTCACCCTAATCTTTGTACTGTACCGGGACACA c.1860
C L G I L V T L F V T L I F V L Y R D T p.620
. . . . . . g.376314
CCAGTGGTCAAATCCTCCAGTCGGGAGCTCTGCTACATCATCCTAGCTGGCATCTTCCTT c.1920
P V V K S S S R E L C Y I I L A G I F L p.640
. . . . . . g.376374
GGTTATGTGTGCCCATTCACTCTCATTGCCAAACCTACTACCACCTCCTGCTACCTCCAG c.1980
G Y V C P F T L I A K P T T T S C Y L Q p.660
. . . . . . g.376434
CGCCTCTTGGTTGGCCTCTCCTCTGCGATGTGCTACTCTGCTTTAGTGACTAAAACCAAT c.2040
R L L V G L S S A M C Y S A L V T K T N p.680
. . . . . . g.376494
CGTATTGCACGCATCCTGGCTGGCAGCAAGAAGAAGATCTGCACCCGGAAGCCCAGGTTC c.2100
R I A R I L A G S K K K I C T R K P R F p.700
. . . . . . g.376554
ATGAGTGCCTGGGCTCAGGTGATCATTGCCTCAATTCTGATTAGTGTGCAACTAACCCTG c.2160
M S A W A Q V I I A S I L I S V Q L T L p.720
. . . . . . g.376614
GTGGTAACCCTGATCATCATGGAACCCCCTATGCCCATTCTGTCCTACCCAAGTATCAAG c.2220
V V T L I I M E P P M P I L S Y P S I K p.740
. . . . . . g.376674
GAAGTCTACCTTATCTGCAATACCAGCAACCTGGGTGTGGTGGCCCCTTTGGGCTACAAT c.2280
E V Y L I C N T S N L G V V A P L G Y N p.760
. . . . . . g.376734
GGACTCCTCATCATGAGCTGTACCTACTATGCCTTCAAGACCCGCAACGTGCCCGCCAAC c.2340
G L L I M S C T Y Y A F K T R N V P A N p.780
. . . . . . g.376794
TTCAACGAGGCCAAATATATCGCGTTCACCATGTACACCACCTGTATCATCTGGCTAGCT c.2400
F N E A K Y I A F T M Y T T C I I W L A p.800
. . . . . . g.376854
TTTGTGCCCATTTACTTTGGGAGCAACTACAAGATCATCACAACTTGCTTTGCAGTGAGT c.2460
F V P I Y F G S N Y K I I T T C F A V S p.820
. . . . . . g.376914
CTCAGTGTAACAGTGGCTCTGGGGTGCATGTTCACTCCCAAGATGTACATCATTATTGCC c.2520
L S V T V A L G C M F T P K M Y I I I A p.840
. . . . . . g.376974
AAGCCTGAGAGGAATGTCCGCAGTGCCTTCACCACCTCTGATGTTGTCCGCATGCATGTT c.2580
K P E R N V R S A F T T S D V V R M H V p.860
. . . . . . g.377034
GGCGATGGCAAGCTGCCCTGCCGCTCCAACACTTTCCTCAACATCTTCCGAAGAAAGAAG c.2640
G D G K L P C R S N T F L N I F R R K K p.880
. . | 09 . . . . g.411266
GCAGGGGCAGGGAATGCCAA | TTCTAATGGCAAGTCTGTGTCATGGTCTGAACCAGGTGGA c.2700
A G A G N A N | S N G K S V S W S E P G G p.900
. . . . . . g.411326
GGACAGGTGCCCAAGGGACAGCATATGTGGCACCGCCTCTCTGTGCACGTGAAGACCAAT c.2760
G Q V P K G Q H M W H R L S V H V K T N p.920
. . . . . . g.411386
GAGACGGCCTGCAACCAAACAGCCGTCATCAAGCCCCTCACTAAAAGTTACCAAGGCTCT c.2820
E T A C N Q T A V I K P L T K S Y Q G S p.940
. . . . . . g.411446
GGCAAGAGCCTGACCTTTTCAGATACCAGCACCAAGACCCTTTACAACGTAGAGGAGGAG c.2880
G K S L T F S D T S T K T L Y N V E E E p.960
. . . . . . g.411506
GAGGATGCCCAGCCGATTCGCTTTAGCCCGCCTGGTAGCCCTTCCATGGTGGTGCACAGG c.2940
E D A Q P I R F S P P G S P S M V V H R p.980
. . . . . . g.411566
CGCGTGCCAAGCGCGGCGACCACTCCGCCTCTGCCGTCCCACCTGACCGCAGAGGAGACC c.3000
R V P S A A T T P P L P S H L T A E E T p.1000
. . . . . . g.411626
CCCCTCTTCCTGGCCGAACCAGCCCTCCCCAAGGGCTTGCCCCCTCCTCTCCAGCAGCAG c.3060
P L F L A E P A L P K G L P P P L Q Q Q p.1020
. . . . . . g.411686
CAGCAACCCCCTCCACAGCAGAAATCGCTGATGGACCAGCTCCAGGGAGTGGTCAGCAAC c.3120
Q Q P P P Q Q K S L M D Q L Q G V V S N p.1040
. . . . . . g.411746
TTCAGTACCGCGATCCCGGATTTTCACGCGGTGCTGGCAGGCCCCGGTGGTCCCGGGAAC c.3180
F S T A I P D F H A V L A G P G G P G N p.1060
. . . . . . g.411806
GGGCTGCGGTCCCTGTACCCGCCCCCGCCACCTCCGCAGCACCTGCAGATGCTGCCGCTG c.3240
G L R S L Y P P P P P P Q H L Q M L P L p.1080
. . . . . . g.411866
CAGCTGAGCACCTTTGGGGAGGAGCTGGTCTCCCCGCCCGCGGACGACGACGACGACAGC c.3300
Q L S T F G E E L V S P P A D D D D D S p.1100
. . . . . . g.411926
GAGAGGTTTAAGCTCCTCCAGGAGTACGTGTATGAGCACGAGCGGGAAGGGAACACGGAA c.3360
E R F K L L Q E Y V Y E H E R E G N T E p.1120
. . . . . . g.411986
GAAGACGAACTGGAAGAGGAGGAGGAGGACCTGCAGGCGGCCAGCAAACTGACCCCGGAT c.3420
E D E L E E E E E D L Q A A S K L T P D p.1140
. . . . . . g.412046
GATTCGCCTGCGCTGACGCCTCCGTCGCCTTTCCGCGACTCGGTGGCCTCGGGCAGCTCG c.3480
D S P A L T P P S P F R D S V A S G S S p.1160
. . . . . . g.412106
GTGCCCAGCTCCCCCGTGTCCGAGTCGGTGCTCTGCACCCCTCCCAACGTATCCTACGCC c.3540
V P S S P V S E S V L C T P P N V S Y A p.1180
. . . . g.412151
TCTGTCATTCTGCGGGACTACAAGCAAAGCTCTTCCACCCTGTAA c.3585
S V I L R D Y K Q S S S T L X p.1194
. . . . . . g.412211
gggggaagggtccacatagaaaagcaagacaagccagagatctcccacacctccagagat c.*60
. . . . . . g.412271
gtgcaaacagctgggaggaaaagcctgggagtggggggcctcgtcgggaggacaggagac c.*120
. . . . . . g.412331
cgctgctgctgctgccgctactgctgctgctgccttaagtaggaagagagggaaggacac c.*180
. . . . . . g.412391
caagcaaaaaatgttccaggccaggattcggattcttgaattactcgaagccttctctgg c.*240
. . . . . . g.412451
gaagaaagggaattctgacaaagcacaattccatatggtatgtaacttttatcacaaatc c.*300
. . . . . . g.412511
aaatagtgacatcacaaacataatgtcctcttttgcacaattgtgcatagatatatatat c.*360
. . . . . . g.412571
gcccacacacactgggccatgcttgccaaggaacagcccacgtggacatgccagtcggat c.*420
. . . . . . g.412631
catgagttcacctgatggcattcggagtgagctggtggagccagacagagcaggtgcggg c.*480
. . . . . . g.412691
gaagggaagggcccaggccagacccatcccaaacggatgatgggatgatgggacagcagc c.*540
. . . . . . g.412751
tccttgctcagaagcccttctccccgctgggctgacagactcctcatcttcaggagactc c.*600
. . . . . . g.412811
aggaatggagcggcacaggggtctctcttcatccactgcaacccatccagtgccagcttt c.*660
. . . . . . g.412871
gagattgcacttgaagaaaggtgcatggaccccctgctgctctgcagattccctttattt c.*720
. . . . . . g.412931
aggaaaacaggaataagagcaaaattatcaccaaaaagtgcttcatcaggcgtgctacag c.*780
. . . . . . g.412991
gaggaaggagctagaaatagaacaatccatcagcatgagactttgaaaaaaaaacacatg c.*840
. . . . . . g.413051
atcagcttctcatgttccatattcacttattggcgatttggggaaaaggccggaacaaga c.*900
. . . . . . g.413111
gattgttacgagagtggcagaaacccttttgtagattgacttgtgtttgtgccaagcggg c.*960
. . . . . . g.413171
ctttccattgaccttcagttaaagaacaaaccatgtgacaaaattgttaccttccactta c.*1020
. . . . . . g.413231
ctgtagcaaataatacctacaagttgaacttctaagatgcgtatatgtacaatttggtgc c.*1080
. . . . . . g.413291
cattatttctcctacgtattagagaaacaaatccatctttgaatctaatggtgtactcat c.*1140
. . . . . . g.413351
agcaactattactggtttaaatgacaaataattctatcctattgtcactgaagtccttgt c.*1200
. . . . . . g.413411
aactagcgagtgaatgtgttcctgtgtccttgtatatgtgcgatcgtaaaatttgtgcaa c.*1260
. . . . . . g.413471
tgtaatgtcaaattgactggtcaatgtcaacctagtagtcaatctaactgcaattagaaa c.*1320
. . . . . . g.413531
ttgtcttttgaatatactatatatattttttatgttccaataatgttttgtacatcattg c.*1380
. . . . . . g.413591
tcatcaatatctacagaagctctttgacggtttgaatactatggctcaaggttttcatat c.*1440
. . . . . . g.413651
gcagctcggatggacatttttcttctaagatggaacttatttttcagatattttctgatg c.*1500
. . . . . . g.413711
tggagatatgttattaatgaagtggtttgaaaatttgttatattaaaagtgcacaaaaac c.*1560
. . . . . . g.413771
tgagagtgaaaataaaaggtacattttataagcttgcacacattattaacacataagatt c.*1620
. . . . . . g.413831
gaacaaagcatttagattattccaggttatatcatttttttaaagattttccacagctac c.*1680
. . . . . . g.413891
ttgagtgtctaacatacagtaacatctaactcagctaataatttgtaaaatctttatcaa c.*1740
. . . . . . g.413951
tcacattttgccttcttttaatttttatgttcatggacttttattcctgtgtcttggctg c.*1800
. . . . . . g.414011
tcataactttttatttctgctatttgctgttgtgtaatatccatggacatgtaatccact c.*1860
. . . . . . g.414071
tactccatctttacaatccctttttaccaccaataaaaggatttttcttgctgttttgat c.*1920
. . . . . . g.414131
ttcttctattatttgtggaatgaattataccccccttaaatatctttgtttatgccttat c.*1980
. . . . . . g.414191
gttcagtcatattttaatatgcttccttcatattgaagctgctgatttctcagccaaaaa c.*2040
. . . . . . g.414251
tcatcttagaatctttaaatatccattgcatcatttgttcagaatttaacatccattcca c.*2100
. . . . . . g.414311
atgttggaggcttgtattacttatatttcatcatattctattgccaagtttagtcagttc c.*2160
. . . . . . g.414371
cacaccaagaatgaactgcatttcctttaaaaattattttaaaacacctttattgaaaag c.*2220
. . . . . . g.414431
atctcatgactgagatgtggactttggttccatgttttcattgtaagaaagcagagagcg c.*2280
. . . . . . g.414491
gaaaatcaatggctccagtgattaatagatgggtttttagtaattgacaaattcatgagg c.*2340
. . . . . . g.414551
gaaagcatatgatctctttattagtgaatcatgcttattttttactcttaatgccactaa c.*2400
. . . . . . g.414611
tatacatccctaatatcacagggcttgtgcattcagatttttaaaaaattaggatagata c.*2460
. . . . . . g.414671
aggaaacaacttatattcaagtgtaagatgatatcaggttggtctaagacttttggtgaa c.*2520
. . . . . . g.414731
cacgttcattcaactgtgatcactttattactctgaatgcctactattatcctgattatg c.*2580
. . . . . . g.414791
gggtctcctgaataaatagagtattagtccttatgtcatcattgttcaaaattggagatg c.*2640
. . . . . . g.414851
tacacatacataccctataccaagagggccgaaactcttcaccttgatgtatgttctgat c.*2700
. . . . . . g.414911
acaagttgttcagcttcttgtaaatgtgttttccttcggcttgttactgccttttgtcaa c.*2760
. . . g.414950
ataatcttgacaatgctgtataataaatattttctattt c.*2799
(downstream sequence)
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