(used for variant description)
(last modified February 4, 2017)
This file was created to facilitate the description of sequence variants on transcript NM_000843.3 in the GRM6 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_008105.1, covering GRM6 transcript NM_000843.3.
(upstream sequence)
. . . . . g.5059
cggaggcccgggcaggccggctgagctaactccccagagccgaagtggaaggcgcgccc c.-121
. . . . . . g.5119
cgagcgccttctccccaggaccccggtgtccctccccgcgccccgagcccgcgctctcct c.-61
. . . . . . g.5179
tcccccgccctcagagcgctccccgcccctctgtctccccgcagcccgctagacgagccg c.-1
. . . . . . g.5239
ATGGCGCGGCCCCGGAGAGCCCGGGAGCCGCTGCTCGTGGCGCTGCTGCCGCTGGCGTGG c.60
M A R P R R A R E P L L V A L L P L A W p.20
. . . . . . g.5299
CTGGCGCAGGCGGGCCTGGCGCGCGCGGCGGGCTCTGTGCGCCTGGCGGGCGGCCTGACG c.120
L A Q A G L A R A A G S V R L A G G L T p.40
. . . . . . g.5359
CTGGGCGGCCTGTTCCCGGTGCACGCGCGGGGCGCGGCGGGCCGGGCGTGCGGGCAGCTG c.180
L G G L F P V H A R G A A G R A C G Q L p.60
. . . . . . g.5419
AAGAAGGAGCAGGGCGTGCACCGGCTGGAGGCCATGCTGTACGCGCTGGACCGCGTCAAC c.240
K K E Q G V H R L E A M L Y A L D R V N p.80
. . . . . . g.5479
GCCGACCCCGAGCTGCTGCCCGGCGTGCGCCTGGGCGCGCGGCTGCTGGACACCTGCTCG c.300
A D P E L L P G V R L G A R L L D T C S p.100
. . . . . . g.5539
CGGGACACCTACGCGCTGGAGCAGGCGCTGAGCTTCGTGCAGGCGCTGATCCGCGGCCGC c.360
R D T Y A L E Q A L S F V Q A L I R G R p.120
. . . . . . g.5599
GGCGACGGCGACGAGGTGGGCGTGCGCTGCCCGGGAGGCGTCCCTCCGCTGCGCCCCGCG c.420
G D G D E V G V R C P G G V P P L R P A p.140
. . . . . . g.5659
CCCCCCGAGCGCGTCGTGGCCGTCGTGGGCGCCTCGGCCAGCTCCGTCTCCATCATGGTC c.480
P P E R V V A V V G A S A S S V S I M V p.160
. . | 02 . . . . g.8076
GCCAACGTGCTGCGCCTGTTTGCG | ATACCCCAGATCAGCTATGCCTCCACAGCCCCGGAG c.540
A N V L R L F A | I P Q I S Y A S T A P E p.180
. . . . . . g.8136
CTCAGCGACTCCACACGCTATGACTTCTTCTCCCGGGTGGTGCCACCCGACTCCTACCAG c.600
L S D S T R Y D F F S R V V P P D S Y Q p.200
. . . . . . g.8196
GCGCAGGCCATGGTGGACATCGTGAGGGCACTGGGATGGAACTATGTGTCCACGCTGGCC c.660
A Q A M V D I V R A L G W N Y V S T L A p.220
. . . . . . g.8256
TCCGAGGGCAACTATGGCGAAAGTGGGGTTGAGGCCTTCGTTCAGATCTCCCGAGAGGCT c.720
S E G N Y G E S G V E A F V Q I S R E A p.240
| 03 . . . . . . g.8623
G | GGGGGGTCTGTATTGCCCAGTCTATCAAGATTCCCAGGGAACCAAAGCCAGGAGAGTTC c.780
G | G V C I A Q S I K I P R E P K P G E F p.260
. . . . . . g.8683
AGCAAGGTGATCAGGAGACTCATGGAGACGCCCAACGCCCGGGGCATCATCATCTTTGCC c.840
S K V I R R L M E T P N A R G I I I F A p.280
. | 04. . . . . g.9420
AATGAGGATGACATCAG | GCGGGTCCTGGAGGCAGCTCGCCAGGCCAACCTGACCGGCCAC c.900
N E D D I R | R V L E A A R Q A N L T G H p.300
. . . . . . g.9480
TTCCTGTGGGTCGGCTCAGACAGCTGGGGAGCCAAGACCTCACCCATCTTGAGCCTGGAG c.960
F L W V G S D S W G A K T S P I L S L E p.320
. . . . . | 05 . g.10726
GACGTGGCCGTTGGGGCCATCACCATCCTGCCCAAAAGGGCCTCCATCGACG | GATTTGAC c.1020
D V A V G A I T I L P K R A S I D G | F D p.340
. . . . . . g.10786
CAGTACTTCATGACTCGATCCCTGGAGAACAACCGCAGGAACATCTGGTTCGCCGAGTTC c.1080
Q Y F M T R S L E N N R R N I W F A E F p.360
. . . . . . g.10846
TGGGAAGAGAATTTTAACTGCAAACTGACCAGCTCAGGTACCCAGTCAGACGATTCCACC c.1140
W E E N F N C K L T S S G T Q S D D S T p.380
. | 06 . . . . . g.11035
CGCAAATGCACAG | GCGAGGAACGCATCGGCCGGGACTCCACCTACGAGCAGGAGGGCAAG c.1200
R K C T G | E E R I G R D S T Y E Q E G K p.400
. . . . . . g.11095
GTGCAGTTTGTGATTGATGCGGTGTACGCCATTGCCCACGCCCTCCACAGCATGCACCAG c.1260
V Q F V I D A V Y A I A H A L H S M H Q p.420
. . . . . . g.11155
GCGCTCTGCCCTGGGCACACAGGCCTGTGCCCGGCGATGGAACCCACTGATGGGCGGATG c.1320
A L C P G H T G L C P A M E P T D G R M p.440
. . . | 07 . . . g.13166
CTTCTGCAGTACATTCGAGCTGTCCGCTTCAATG | GCAGCGCAGGAACCCCTGTGATGTTC c.1380
L L Q Y I R A V R F N G | S A G T P V M F p.460
. . . . . . g.13226
AACGAGAACGGAGATGCGCCCGGGCGGTACGACATCTTCCAGTACCAGGCGACCAATGGC c.1440
N E N G D A P G R Y D I F Q Y Q A T N G p.480
. . . . . . g.13286
AGTGCCAGCAGTGGCGGGTACCAGGCAGTGGGCCAGTGGGCAGAGACCCTCAGACTGGAT c.1500
S A S S G G Y Q A V G Q W A E T L R L D p.500
| 08 . . . . . . g.13430
| GTGGAGGCCCTGCAGTGGTCTGGCGACCCCCACGAGGTGCCCTCGTCTCTGTGCAGCCTG c.1560
| V E A L Q W S G D P H E V P S S L C S L p.520
. . . . . . g.13490
CCCTGCGGGCCGGGGGAGCGGAAGAAGATGGTGAAGGGCGTCCCCTGCTGTTGGCACTGC c.1620
P C G P G E R K K M V K G V P C C W H C p.540
. . . . . . g.13550
GAGGCCTGTGACGGGTACCGCTTCCAGGTGGACGAGTTCACATGCGAGGCCTGTCCTGGG c.1680
E A C D G Y R F Q V D E F T C E A C P G p.560
. . . . . . g.13610
GACATGAGGCCCACGCCCAACCACACGGGCTGCCGCCCCACACCTGTGGTGCGCCTGAGC c.1740
D M R P T P N H T G C R P T P V V R L S p.580
. . . . . . g.13670
TGGTCCTCCCCCTGGGCAGCCCCGCCGCTCCTCCTGGCCGTGCTGGGCATCGTGGCCACT c.1800
W S S P W A A P P L L L A V L G I V A T p.600
. . . . . . g.13730
ACCACGGTGGTGGCCACCTTCGTGCGGTACAACAACACGCCCATCGTCCGGGCCTCGGGC c.1860
T T V V A T F V R Y N N T P I V R A S G p.620
. . . . . . g.13790
CGAGAGCTCAGCTACGTCCTCCTCACCGGCATCTTCCTCATCTACGCCATCACCTTCCTC c.1920
R E L S Y V L L T G I F L I Y A I T F L p.640
. . . . . . g.13850
ATGGTGGCTGAGCCTGGGGCCGCGGTCTGTGCCGCCCGCAGGCTCTTCCTGGGCCTGGGC c.1980
M V A E P G A A V C A A R R L F L G L G p.660
. . . . . . g.13910
ACGACCCTCAGCTACTCTGCCCTGCTCACCAAGACCAACCGTATCTACCGCATCTTTGAG c.2040
T T L S Y S A L L T K T N R I Y R I F E p.680
. . . . . . g.13970
CAGGGCAAGCGCTCGGTCACACCCCCTCCCTTCATCAGCCCCACCTCACAGCTGGTCATC c.2100
Q G K R S V T P P P F I S P T S Q L V I p.700
. . | 09 . . . . g.16938
ACCTTCAGCCTCACCTCCCTGCAG | GTGGTGGGGATGATAGCATGGCTGGGGGCCCGGCCC c.2160
T F S L T S L Q | V V G M I A W L G A R P p.720
. . . . . . g.16998
CCACACAGCGTGATTGACTATGAGGAACAGCGGACGGTGGACCCCGAGCAGGCCAGAGGG c.2220
P H S V I D Y E E Q R T V D P E Q A R G p.740
. . . . . . g.17058
GTGCTCAAGTGCGACATGTCGGATCTGTCTCTCATCGGCTGCCTGGGCTACAGCCTCCTG c.2280
V L K C D M S D L S L I G C L G Y S L L p.760
. . . . . . g.17118
CTCATGGTCACGTGCACAGTGTACGCCATCAAGGCCCGTGGCGTGCCCGAGACCTTCAAC c.2340
L M V T C T V Y A I K A R G V P E T F N p.780
. . . . . . g.17178
GAGGCCAAGCCCATCGGCTTCACCATGTACACCACCTGCATCATCTGGCTGGCATTCGTG c.2400
E A K P I G F T M Y T T C I I W L A F V p.800
. . . | 10 . . . g.18293
CCCATCTTCTTTGGCACTGCCCAGTCAGCTGAAAAG | ATCTACATCCAGACAACCACGCTA c.2460
P I F F G T A Q S A E K | I Y I Q T T T L p.820
. . . . . . g.18353
ACCGTGTCCTTGAGCCTGAGTGCCTCGGTGTCCCTCGGCATGCTCTACGTACCCAAAACC c.2520
T V S L S L S A S V S L G M L Y V P K T p.840
. . . . . . g.18413
TACGTCATCCTCTTCCATCCAGAGCAGAATGTGCAGAAGCGAAAGCGGAGCCTCAAGGCC c.2580
Y V I L F H P E Q N V Q K R K R S L K A p.860
. . . . . g.18467
ACCTCCACGGTGGCAGCCCCACCCAAGGGCGAGGATGCAGAGGCCCACAAGTAG c.2634
T S T V A A P P K G E D A E A H K X p.877
. . . . . . g.18527
cagggcaggtgggaacgggactgcttgctgcctctcctttcttcctcttgcctcgaggtg c.*60
. . . . . . g.18587
gaagctgtatagagcccgggtccacggtgaacagtcagtggcagggagtttgccaagacc c.*120
. . . . . . g.18647
atgctccgcgtcggtggggctggccttgagaaggaactggacccagctctaccccgattc c.*180
. . . . . . g.18707
cagcatgtgagcttcatgcttcctcaccacagaccagactcgcttcccatggtgggaaac c.*240
. . . . . . g.18767
agccaccgagaaggttctagctctagaaagggactaaacttattctctcatccgaagtcc c.*300
. . . . . . g.18827
aaagaggatgatgaagccctgggctttgcctggtttgcgggagatttcctcccctcagtc c.*360
. . . . . . g.18887
aacccccataacctggggattgggcagtgtggaagaacgtgtagaccccagaatgaaaca c.*420
. . . . . . g.18947
tggggttggagtggaggaggagctgtctcagcaagaggagacctggggctgtgcatctgg c.*480
. . . . . . g.19007
atggaggcactcaggcctgggtaggattcctctggcacggagggagagaccctgggtgag c.*540
. . . . . . g.19067
acccctgtgagcatgggaagggcctgcagtgggcgcgggagtgagctgaggaactggggt c.*600
. . . . . . g.19127
gcgcccccatgagattcccaatgccatgggctttcccccatccccccgggattgggcaag c.*660
. . . . . . g.19187
gtcagacttagagtacagctgttttcctcccctctgtgtactcccttaaatcaccccaac c.*720
. . . . . . g.19247
cttggccaggcatggtggctcacacctgtaatcccagcactttgggaggccgaggcaggt c.*780
. . . . . . g.19307
ggatcacctgaggtccggagttcgagaccagcctggccaatgtggtgaaaccctgtctct c.*840
. . . . . . g.19367
actaaaaatacaaaaattagccaggtgtgatggtgggtgcctgtaatcccagttacttgg c.*900
. . . . . . g.19427
gaggctgaggcaggagaatcgcttgaacctgggaggtggaggttgcagtgagctgtgatt c.*960
. . . . . . g.19487
gtgccactgtactccagcctgggtgacagagcgagactctgtctcaaaaaaacaaaacaa c.*1020
. . . . . . g.19547
aaaaacaccaaaaaaacccccaaacctgaagaaattcagatacacgtgtgtaatgttagt c.*1080
. . . . . . g.19607
gatgtgagaacaaggagcaggggtgcatttgtgttgtgttcgggttggggatgggtttag c.*1140
. . . . . . g.19667
gagctccaggttgggagcagtgacagagagtcatggccgtggtgagggtgaatcccaagt c.*1200
. . . . . . g.19727
ggatggctcaggacgggtatggaaacccttcattcctcataggtactgggaagtccattt c.*1260
. . . . . . g.19787
gcaagctgagcgccaggcctggggaggaagaggcttgggctgcagatgcacgcacatttg c.*1320
. . . . . . g.19847
tttttcactgatagtttttacaaaaagcttggtttaagttatggagttttatgtccctgg c.*1380
. . . . . . g.19907
gagtagaatttacatttgttaaattgaccactgtttaagatcagtatacattctctagtc c.*1440
. . . . . . g.19967
tgtgatgtctggagctagttttgagggtgaaccacactttatccaacatacaaactttcc c.*1500
. . . . . . g.20027
catgcagcttctctggtgcgcagttggttttgaccgtgggactaggtgcttctgcaggtt c.*1560
. . . . . . g.20087
ttaagtaattaacttaaaagcttctcctctgagaaacatttctgttgcgctactgactct c.*1620
. . . . . . g.20147
ccttctccacatttgttgtgttcctagggcttctctatagtgcacattaggacgtttcat c.*1680
. . . . . . g.20207
ttgttgctgaatgctttccagaattatttattccatagggtttctctcctgtgcagctct c.*1740
. . . . . . g.20267
ctcatgggtaatggggcgtgttttcttgccaaaggcggttccaccctcgtgattgtatag c.*1800
. . . . . . g.20327
ggctcttctcctgtatgaactctgagatcagtgagctctgatctccaagggaaagttttc c.*1860
. . . . . . g.20387
ctgcatttgctgttttctcatgtctctcccagtgtgaattctttggtgtgcagtgcgctc c.*1920
. . . . . . g.20447
tggcttctagctgaaaacttttccacagttttacattcatgtggttttctccactgtgaa c.*1980
. . . . . . g.20507
ctctgtgattcagaatcagaagcagttcttagtagaggcatttctacactgattgcactg c.*2040
. . . . . . g.20567
aggatttctccccagtgtgaagtttctggcatagagtcctggcttcccgcagacgacttt c.*2100
. . . . . . g.20627
cacactctgccatgttcatgcctgtgggcctctctggcaggaactctgatgcaccgcgag c.*2160
. . . . . . g.20687
gcccatgtactcctgtggctttctcacattcggtctacttgcagggtatctccacagcat c.*2220
. . . . . . g.20747
gcaccattctgggtacagggggacatcctctgttactgaagatgttgtcatatttagtac c.*2280
. . . . . . g.20807
cttcacaaggtttctctccttccagaattttctgatgtacacaaataactgacttccaca c.*2340
. . . . . . g.20867
agagggcttttccacactcggtgtgtgcatacagtttctgcctgtgatcatttctttatg c.*2400
. . . . . . g.20927
ttattattttattttttcgagatagggtcttgctcaatttcttaggctggagtgcagtgg c.*2460
. . . . . . g.20987
cacgatcatagctcactgaagtttcgacctgggctcaagcaatcctcccgcttcagcctc c.*2520
. . . . . . g.21047
ctgagtagctggtgcgcacgaccatacccagctaatgttttattttttgtagagacgagg c.*2580
. . . . . . g.21107
tctcactatgttgcccaggctggtctcgaacttctgagctcgagcgatcctcctgcctcc c.*2640
. . . . . . g.21167
acctcccaaagtgttcggattacaaacgtgagccatcgcacctagcctctttgatcattt c.*2700
. . . . . . g.21227
ctgtggtgttcagtggaggttgacagctccctaaagattttcctgtttttttgcatgcat c.*2760
. . . . . . g.21287
gggtttgaattctttgaggtccaatttatttggacccctgaataaagttttgtgggtttt c.*2820
. . . . . . g.21347
cttctatgtgtggaatttataaggcattcttccagtgtggtttctcttatgtcgagtgag c.*2880
. . . . . . g.21407
agctgacctgcaccgaaggttttgtcccatttgttgcccttgaattatttgtatgaatta c.*2940
. . . . . . g.21467
tatgttccagtgaaaatggagttctgggttggaggcttattccatgtttacacaattaaa c.*3000
. . . . . . g.21527
attgcagtgttcctctctgggatgagagctctaaagcagagtaagattacgttctgatgt c.*3060
. . . . . . g.21587
aagctttaaccacctatttataaggtctcacctgtggtccactgtgttgagacttctaca c.*3120
. . . . . . g.21647
gaagagcttctgtatagtaaccattttcttaggctgtctcacttgtgtgaatcttctgac c.*3180
. . . . . . g.21707
acatttattatagctttgtcccatttcttatcctttttgctctttagaaatttcccttta c.*3240
. . . . . . g.21767
atttattacattcattgcttactgtaaagagtccaggtaactgactttattcagttactt c.*3300
. . . g.21797
cctgttcaataaatttaacttttcccaaaa c.*3330
(downstream sequence)
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