host cell factor C1 (VP16-accessory protein) (HCFC1) - 5921 nt intron 01 reference sequence

(intronic numbering for coding DNA Reference Sequence)


         .         .         .         .         .         .  g.5781
gtgagtgcaaagcccgctgggtcttcggctctttccctccctccatctcctccctctccc  c.193+60

         .         .         .         .         .         .  g.5841
tcctctttcctccctccctccatctgctccctccctctcctccctccctccatctcctcc  c.193+120

         .         .         .         .         .         .  g.5901
ctcaccctctacccttccctctctctctcccctcctcccttacccgtccttctcccctct  c.193+180

         .         .         .         .         .         .  g.5961
ccccgtccccctcccccttctcccctcctccccctccctccccactgatcggcttgcccc  c.193+240

         .         .         .         .         .         .  g.6021
tcccctttgctgtgccgggcttcagtgcttttctctgatcttctccccgttcccttgtct  c.193+300

         .         .         .         .         .         .  g.6081
ctcccgtgtttgaggattggttttcgttagttaaaagaaagcccctagtccgactggtga  c.193+360

         .         .         .         .         .         .  g.6141
gggagaggggctgtcgccagcggtggtgacttcagacccacaccgttacccagcgggctg  c.193+420

         .         .         .         .         .         .  g.6201
gggctggggctggggcgggcggatgtgtccccttggcgcaggcagagctcccctccctcc  c.193+480

         .         .         .         .         .         .  g.6261
ctccctcccttctcctgcgcctgctcagctctccctcatctcgagtgcccattctggaga  c.193+540

         .         .         .         .         .         .  g.6321
aatgaccatttctagattacagattcgttctctgtctctcgaaaaagggagggaagggaa  c.193+600

         .         .         .         .         .         .  g.6381
gcgctcttaggacgcagagtttaacatccgccgacccgggtaatgccggagccttgggga  c.193+660

         .         .         .         .         .         .  g.6441
cccctaggacgggccggcggcagggccgcctctccctttccacgtttacttctgcagcat  c.193+720

         .         .         .         .         .         .  g.6501
ttctttccaagtcgccccttctcctaatctggtgccttctggtttacaagctgaattcca  c.193+780

         .         .         .         .         .         .  g.6561
gttacccctcagcggcctgcgtagtcgtgtgtctccccgcttctgcggatccagggggtt  c.193+840

         .         .         .         .         .         .  g.6621
accccacccgctcttctgcctccctgcaaaacccaaagcccgttagttgggaaggggagg  c.193+900

         .         .         .         .         .         .  g.6681
aacctctctcttcaggtatggctgatgcaccacggccttcgtgggggccgtttgttgttg  c.193+960

         .         .         .         .         .         .  g.6741
cctctgcctagtagccttgcttagtctctagggcagaaagcctgctgctgtccacgacag  c.193+1020

         .         .         .         .         .         .  g.6801
ctttgtggcatcctttttcttggtggctacttggcccgttttgtgcccctagcacaaggg  c.193+1080

         .         .         .         .         .         .  g.6861
tcagttcccaagttgcctactgactgcccgttggcccacaggaccctggccttgcccaga  c.193+1140

         .         .         .         .         .         .  g.6921
aggcagggtcagggtgagttcggtcccaggcaagagctggaagagtctgggtgagggaaa  c.193+1200

         .         .         .         .         .         .  g.6981
agccccctgcaggcggctgggggagggccttgggatgccctagtcctgagtggcaggcac  c.193+1260

         .         .         .         .         .         .  g.7041
ggctcccagcactaaccccttgctccgcggccgttctctcctgggggctctagcgatccc  c.193+1320

         .         .         .         .         .         .  g.7101
ctggcctcggtggtggccctgcagacaaaccctcgctgagtgggctttgtgtcctgagcg  c.193+1380

         .         .         .         .         .         .  g.7161
gtgagaggctgctgttctttggctgagctccagtgcctcgatgctctgggggtgggaagc  c.193+1440

         .         .         .         .         .         .  g.7221
tggagctgcctggagggagaaagttggtttagggagttgggaaggctggagctgggctct  c.193+1500

         .         .         .         .         .         .  g.7281
tgggtgccgcttccttccccaccccccaaggcagaaagtgctggtttctccacatctcgg  c.193+1560

         .         .         .         .         .         .  g.7341
agattatcgccacctaccacgttgactttgaaaggctggtgggttgtctgtgaccgtttt  c.193+1620

         .         .         .         .         .         .  g.7401
tcgttccaggtctctcagcacctgttgcctccagggagcagggcctttctcagcagcccc  c.193+1680

         .         .         .         .         .         .  g.7461
cgggcgggggcgcttggtggttggtggtgccccgcgccagcccaggcagctgcagtagca  c.193+1740

         .         .         .         .         .         .  g.7521
ggaattagctcagtaagctaaggcttctccagtggtggggctgtttatagaggcaccgtc  c.193+1800

         .         .         .         .         .         .  g.7581
accatgagcagcaccttctccactctgtggaccgactttcttctcataaggcctggagca  c.193+1860

         .         .         .         .         .         .  g.7641
ggctccctggcagggaaatgcaattttagaaagtagggcaggggcctaattacagtcggc  c.193+1920

         .         .         .         .         .         .  g.7701
tccagagtccaccaccactgctgccttggcttcctggggcctctgcatattcattagttt  c.193+1980

         .         .         .         .         .         .  g.7761
attaaaatgaattgaccactttggcatgaattcattaccagtctgcaaagacaggttgtg  c.193+2040

         .         .         .         .         .         .  g.7821
cattagaggggtagcctgccttccaaagggctgcttaaaatgaagctctgggatcctcca  c.193+2100

         .         .         .         .         .         .  g.7881
gggtagcagtttggaaactgtcatcggcaattcctcagacgagagagcagctggcagacc  c.193+2160

         .         .         .         .         .         .  g.7941
tgaagccctcttcctcaccggggtttctgccccctcccgccagcccggcctcgtcacctt  c.193+2220

         .         .         .         .         .         .  g.8001
tgtcttgtcttcttttgttgtgtttgggatgagatcagggcatattctcacgcctgtgcc  c.193+2280

         .         .         .         .         .         .  g.8061
ccttgcagttctgcgggatcagtcctcaaaaagccttgtacctttggagagagctgatct  c.193+2340

         .         .         .         .         .         .  g.8121
ggaaggggttcccgttgctaggataagaaagcttcagggggtgtgtgctttgagagctct  c.193+2400

         .         .         .         .         .         .  g.8181
tagggtagctactgtgcttgtccttagggaattttagttccatgtggcaagccaaaggat  c.193+2460

         .         .         .         .         .         .  g.8241
tcagagtgctgccaggtgtggggggtgggggagcgagagctttggctacggtggctctgt  c.193+2520

         .         .         .         .         .         .  g.8301
aatgtccataggttcttggagctggagggagccttggaaaatacctagtggaactacttc  c.193+2580

         .         .         .         .         .         .  g.8361
cttgtttctgcagatgaggaaattggggtccaagaggggaagtgacaggtccagggtcgc  c.193+2640

         .         .         .         .         .         .  g.8421
cctcccagctggtggcggagttgggcgggagtgcaaaccttcatagaggccgttctgcca  c.193+2700

         .         .         .         .         .         .  g.8481
cctgtctttggggcccatcacctttgaaatgcctccattctctcctctgtccctgtatct  c.193+2760

         .         .         .         .         .         .  g.8541
aattgttcattgcgttgggcaggcatcaaatgtgtccccttccacaccaagccctcctct  c.193+2820

         .         .         .         .         .         .  g.8601
cctcttactagactcttgcagtcacttcctgattggccctgctagtttcatttgtcggga  c.193+2880

         .         .         .         .         .         .  g.8661
aatcctgttcacccttcaaggcccggctgaaacgtcacctcttctgagaagccctttcca  c.193+2940

         .         .   g.8682
ctcctgtcctcccctctccag  c.193+2961

--------------------- middle of intron ---------------------
                            g.8683      .         .           g.8702
                            c.194-2960  cagtcgcactgctctgtgct  c.194-2941

.         .         .         .         .         .           g.8762
cccaagggcccggcttggtcagagctcttctagggtgtttgtctcatcgtgggagggggg  c.194-2881

.         .         .         .         .         .           g.8822
catgcagccttcctaccccattgggagtatgagcacaagatcggtgtcctctgtgcctcc  c.194-2821

.         .         .         .         .         .           g.8882
cagcacgtcgtatgccacacaggaaatgctctaatgtgacaggtagaacagagaggaagg  c.194-2761

.         .         .         .         .         .           g.8942
cagctcgttgaacttgaccggccacctcactgcatgggcaccagtctctaggtggtgatg  c.194-2701

.         .         .         .         .         .           g.9002
ggacagtggcaaccagggatggagcttgcagagcatgaagtggttgggggagctgatgaa  c.194-2641

.         .         .         .         .         .           g.9062
acacagagaggccggggcacagccttgctcaggagaggggagctggagtggtcttcatct  c.194-2581

.         .         .         .         .         .           g.9122
agtgcagggtcctttccccaccttcccctcccagctgagagccagcatttccaggatgag  c.194-2521

.         .         .         .         .         .           g.9182
gggcccaaggattgggttacatgacaccccccagatgattcaggggtgactgagagcagc  c.194-2461

.         .         .         .         .         .           g.9242
tgtcacattgaaaagctgggagaagggaggagagcttgctcgtgtgctttcagggggcgg  c.194-2401

.         .         .         .         .         .           g.9302
aaccaggactcgtgggtgagatgaggagccgcaggtttgtcgtcacaccaggagctgtgc  c.194-2341

.         .         .         .         .         .           g.9362
tccctgacagacctctcttgacgggggtggggagggcccctgccctgcctggagtgttct  c.194-2281

.         .         .         .         .         .           g.9422
agaatgagatcagcacctcttgggtcctgtagaaggatctggtgagcgggatccccaaag  c.194-2221

.         .         .         .         .         .           g.9482
atatcacagggcgcttctggcctggcccaccggctcactgatcagcgtgtgataggaaag  c.194-2161

.         .         .         .         .         .           g.9542
ctgcccactgaccccacgtgccatttagctttgtcccaaactctgacccgcagccccata  c.194-2101

.         .         .         .         .         .           g.9602
gctgtgggctttgaccacgagggtgctcaggggagtgagggtggctgcctggacatggga  c.194-2041

.         .         .         .         .         .           g.9662
ccctagggaaggcacagatcggttgcttcaagtcagtgatggggctgttgtctctgtctc  c.194-1981

.         .         .         .         .         .           g.9722
tgttttacgctgtgacctcaggtgtcgcttgccctcctgggctctgcccctttacctacc  c.194-1921

.         .         .         .         .         .           g.9782
gagagcagttggcccaggcagccttaggtctcgttatgcgtttaccctggtagcttgcat  c.194-1861

.         .         .         .         .         .           g.9842
ggagctccctccagggattggtcaggacggctctccagtgcgcaaggctgttggccttgg  c.194-1801

.         .         .         .         .         .           g.9902
cagctcttgcttttctggggtggtttttgcactgggaatgagaaagaggcagagggccag  c.194-1741

.         .         .         .         .         .           g.9962
gatccgagcttgcacatgcgggcggcacaggtgttgtccctctgctttagggaaatggca  c.194-1681

.         .         .         .         .         .           g.10022
ggggagctctagtgctcggcatgtccgaggcccagtgactcagctgaatggctgcagagg  c.194-1621

.         .         .         .         .         .           g.10082
ctgtcagcctgctcgaagcctacccgcagagtgggtgctggagagcggggtgggggtgct  c.194-1561

.         .         .         .         .         .           g.10142
ctcgcctcaggaggagcggtggtggtacagttgtgctgtgtggggttttctgtttttttt  c.194-1501

.         .         .         .         .         .           g.10202
gtttgtttgtttgttttgaggttaggtcttgctctgttgcccaggccgggatgcagtggt  c.194-1441

.         .         .         .         .         .           g.10262
gcggtctcagctcactgcagcctcaaactctgagggtcaggcagtcctcccgcctcagcc  c.194-1381

.         .         .         .         .         .           g.10322
tcctgagtagctaggaccacaagtgtatgccaccacactgagccagtgttttaaaattat  c.194-1321

.         .         .         .         .         .           g.10382
ttgtagagacggggtctccctgtgctacccaggctgggagttgtgctttggataagggct  c.194-1261

.         .         .         .         .         .           g.10442
agccttgcacacggttccgcattgagccctgggggtgacagtgtgagactgggtgggacc  c.194-1201

.         .         .         .         .         .           g.10502
agagtgcagtggggcatgcattcccaaccatggtcagccgcctggccctgggtgcacacc  c.194-1141

.         .         .         .         .         .           g.10562
tgaatatggaaaaaaaacactgtttttcctcttctatggtctcacaacacttttggccac  c.194-1081

.         .         .         .         .         .           g.10622
caaactgaatagtctgtattatatcacaatatcacagcatccctgtgtggaagccttccc  c.194-1021

.         .         .         .         .         .           g.10682
accccacaggaatccccccatgccctgtcacgtcctgggggacccatcttgcgtcttgag  c.194-961

.         .         .         .         .         .           g.10742
tcatgtggaggggcctcagttccttctgccgtctgcttgctgagatctcacccaggccag  c.194-901

.         .         .         .         .         .           g.10802
ctcagaggcacagagtcggggttgcacctggcccccagtttggggtttctggaaagagtg  c.194-841

.         .         .         .         .         .           g.10862
tggtgaatcctctgagggacccctcataggaggaggttttcggggaagccctggcctgcc  c.194-781

.         .         .         .         .         .           g.10922
aggtgtgaggggagtcaagtttgaggacatgagggaggggcctggtcccagctgaaggct  c.194-721

.         .         .         .         .         .           g.10982
gctgtgccatcctgtggaagcaaagcagtgcctaaggtctgatttccctctttcttggtg  c.194-661

.         .         .         .         .         .           g.11042
gtcgcctcaccctcatgagcttttgagaagcttctgtcacagctctgctgagactgctgc  c.194-601

.         .         .         .         .         .           g.11102
ctctggcttgcaagaatgttctggagtaccataggtgtggcagcaggggcagggagggat  c.194-541

.         .         .         .         .         .           g.11162
gctggtggaccatcacctaggagaccagaggaagtccgggaggtcagagcagaggccggg  c.194-481

.         .         .         .         .         .           g.11222
tctcatccccatggctcttcgtagcctgcagcggtcactgttttggccacttgaaagtgc  c.194-421

.         .         .         .         .         .           g.11282
tgctctgggctctggctgtcctgaccctgtgatgaagggacaaaaatgtgggctccaggg  c.194-361

.         .         .         .         .         .           g.11342
aggaggagcacaggcccaccaagagggtattttggggagaaattcatgtctgatcactga  c.194-301

.         .         .         .         .         .           g.11402
gtgctagggaaggaaggcagtggctagattcccagtagctgatgagggatcttgcacagt  c.194-241

.         .         .         .         .         .           g.11462
aacttcccgctcattaagatgaccttggcgagaagcagggtggtcacaggctcttttgca  c.194-181

.         .         .         .         .         .           g.11522
ctggcctgaagtcgaggggtttggaagatggcccaggtagcgcagctggagttgctagag  c.194-121

.         .         .         .         .         .           g.11582
cgcccgcagggatggtgctggctcagcccctctcaccaagcttgacggctggcacatttg  c.194-61

.         .         .         .         .         .           g.11642
gggaatgagaggaatgggggctcccgggtgttctgacttctgcctccttctgttccccag  c.194-1


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