(used for variant description)
(last modified December 31, 2022)
This file was created to facilitate the description of sequence variants on transcript NM_000601.4 in the HGF gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000007.13, covering HGF transcript NM_000601.4.
(upstream sequence)
. . . . g.5045
gggagttcagacctagatctttccagttaatcacacaacaaactt c.-121
. . . . . . g.5105
agctcatcgcaataaaaagcagctcagagccgactggctcttttaggcactgactccgaa c.-61
. . . . . . g.5165
caggattctttcacccaggcatctcctccagagggatccgccagcccgtccagcagcacc c.-1
. . . . . . g.5225
ATGTGGGTGACCAAACTCCTGCCAGCCCTGCTGCTGCAGCATGTCCTCCTGCATCTCCTC c.60
M W V T K L L P A L L L Q H V L L H L L p.20
. . | 02 . . . g.12296
CTGCTCCCCATCGCCATCCCCTATGCAG | AGGGACAAAGGAAAAGAAGAAATACAATTCAT c.120
L L P I A I P Y A E | G Q R K R R N T I H p.40
. . . . . . g.12356
GAATTCAAAAAATCAGCAAAGACTACCCTAATCAAAATAGATCCAGCACTGAAGATAAAA c.180
E F K K S A K T T L I K I D P A L K I K p.60
. . . . . . g.12416
ACCAAAAAAGTGAATACTGCAGACCAATGTGCTAATAGATGTACTAGGAATAAAGGACTT c.240
T K K V N T A D Q C A N R C T R N K G L p.80
. | 03 . . . . . g.16378
CCATTCACTTGCAA | GGCTTTTGTTTTTGATAAAGCAAGAAAACAATGCCTCTGGTTCCCC c.300
P F T C K | A F V F D K A R K Q C L W F P p.100
. . . . . . g.16438
TTCAATAGCATGTCAAGTGGAGTGAAAAAAGAATTTGGCCATGAATTTGACCTCTATGAA c.360
F N S M S S G V K K E F G H E F D L Y E p.120
| 04. . . . . . g.17886
AACAAAG | ACTACATTAGAAACTGCATCATTGGTAAAGGACGCAGCTACAAGGGAACAGTA c.420
N K D | Y I R N C I I G K G R S Y K G T V p.140
. . . . . . g.17946
TCTATCACTAAGAGTGGCATCAAATGTCAGCCCTGGAGTTCCATGATACCACACGAACAC c.480
S I T K S G I K C Q P W S S M I P H E H p.160
| 05 . . . . . . g.22932
AG | CTTTTTGCCTTCGAGCTATCGGGGTAAAGACCTACAGGAAAACTACTGTCGAAATCCT c.540
S | F L P S S Y R G K D L Q E N Y C R N P p.180
. . . . . . g.22992
CGAGGGGAAGAAGGGGGACCCTGGTGTTTCACAAGCAATCCAGAGGTACGCTACGAAGTC c.600
R G E E G G P W C F T S N P E V R Y E V p.200
. . | 06 . . . . g.30051
TGTGACATTCCTCAGTGTTCAGAAG | TTGAATGCATGACCTGCAATGGGGAGAGTTATCGA c.660
C D I P Q C S E V | E C M T C N G E S Y R p.220
. . . . . . g.30111
GGTCTCATGGATCATACAGAATCAGGCAAGATTTGTCAGCGCTGGGATCATCAGACACCA c.720
G L M D H T E S G K I C Q R W D H Q T P p.240
. . | 07 . . . . g.31699
CACCGGCACAAATTCTTGCCTGAAAG | ATATCCCGACAAGGGCTTTGATGATAATTATTGC c.780
H R H K F L P E R | Y P D K G F D D N Y C p.260
. . . . . . g.31759
CGCAATCCCGATGGCCAGCCGAGGCCATGGTGCTATACTCTTGACCCTCACACCCGCTGG c.840
R N P D G Q P R P W C Y T L D P H T R W p.280
. . | 08 . . . . g.45392
GAGTACTGTGCAATTAAAACATGCG | CTGACAATACTATGAATGACACTGATGTTCCTTTG c.900
E Y C A I K T C A | D N T M N D T D V P L p.300
. . . . . . g.45452
GAAACAACTGAATGCATCCAAGGTCAAGGAGAAGGCTACAGGGGCACTGTCAATACCATT c.960
E T T E C I Q G Q G E G Y R G T V N T I p.320
. . . . . . g.45512
TGGAATGGAATTCCATGTCAGCGTTGGGATTCTCAGTATCCTCACGAGCATGACATGACT c.1020
W N G I P C Q R W D S Q Y P H E H D M T p.340
. . | 09 . . . . g.49159
CCTGAAAATTTCAAGTGCAA | GGACCTACGAGAAAATTACTGCCGAAATCCAGATGGGTCT c.1080
P E N F K C K | D L R E N Y C R N P D G S p.360
. . . . . . g.49219
GAATCACCCTGGTGTTTTACCACTGATCCAAACATCCGAGTTGGCTACTGCTCCCAAATT c.1140
E S P W C F T T D P N I R V G Y C S Q I p.380
. . | 10 . . . g.54321
CCAAACTGTGATATGTCACATGGACAAG | ATTGTTATCGTGGGAATGGCAAAAATTATATG c.1200
P N C D M S H G Q D | C Y R G N G K N Y M p.400
. . . . . . g.54381
GGCAACTTATCCCAAACAAGATCTGGACTAACATGTTCAATGTGGGACAAGAACATGGAA c.1260
G N L S Q T R S G L T C S M W D K N M E p.420
. | 11 . . . . . g.57820
GACTTACATCG | TCATATCTTCTGGGAACCAGATGCAAGTAAGCTGAATGAGAATTACTGC c.1320
D L H R | H I F W E P D A S K L N E N Y C p.440
. . . . . . g.57880
CGAAATCCAGATGATGATGCTCATGGACCCTGGTGCTACACGGGAAATCCACTCATTCCT c.1380
R N P D D D A H G P W C Y T G N P L I P p.460
. . | 12 . . . . g.63652
TGGGATTATTGCCCTATTTCTCGTT | GTGAAGGTGATACCACACCTACAATAGTCAATTTA c.1440
W D Y C P I S R C | E G D T T P T I V N L p.480
| 13 . . . . . . g.64949
GACC | ATCCCGTAATATCTTGTGCCAAAACGAAACAATTGCGAGTTGTAAATGGGATTCCA c.1500
D H | P V I S C A K T K Q L R V V N G I P p.500
. . . . | 14 . . g.67791
ACACGAACAAACATAGGATGGATGGTTAGTTTGAGATACAG | AAATAAACATATCTGCGGA c.1560
T R T N I G W M V S L R Y R | N K H I C G p.520
. . . . . | 15 . g.68713
GGATCATTGATAAAGGAGAGTTGGGTTCTTACTGCACGACAGTGTTTCCCTTCTCG | AGAC c.1620
G S L I K E S W V L T A R Q C F P S R | D p.540
. . . . . . g.68773
TTGAAAGATTATGAAGCTTGGCTTGGAATTCATGATGTCCACGGAAGAGGAGATGAGAAA c.1680
L K D Y E A W L G I H D V H G R G D E K p.560
. . . . . . g.68833
TGCAAACAGGTTCTCAATGTTTCCCAGCTGGTATATGGCCCTGAAGGATCAGATCTGGTT c.1740
C K Q V L N V S Q L V Y G P E G S D L V p.580
. | 16. . . . . g.69426
TTAATGAAGCTTGCCAG | GCCTGCTGTCCTGGATGATTTTGTTAGTACGATTGATTTACCT c.1800
L M K L A R | P A V L D D F V S T I D L P p.600
. . . . . . g.69486
AATTATGGATGCACAATTCCTGAAAAGACCAGTTGCAGTGTTTATGGCTGGGGCTACACT c.1860
N Y G C T I P E K T S C S V Y G W G Y T p.620
| 17 . . . . . . g.69657
GGAT | TGATCAACTATGATGGCCTATTACGAGTGGCACATCTCTATATAATGGGAAATGAG c.1920
G L | I N Y D G L L R V A H L Y I M G N E p.640
. . . . . . g.69717
AAATGCAGCCAGCATCATCGAGGGAAGGTGACTCTGAATGAGTCTGAAATATGTGCTGGG c.1980
K C S Q H H R G K V T L N E S E I C A G p.660
. . . | 18 . . . g.72409
GCTGAAAAGATTGGATCAGGACCATGTGAG | GGGGATTATGGTGGCCCACTTGTTTGTGAG c.2040
A E K I G S G P C E | G D Y G G P L V C E p.680
. . . . . . g.72469
CAACATAAAATGAGAATGGTTCTTGGTGTCATTGTTCCTGGTCGTGGATGTGCCATTCCA c.2100
Q H K M R M V L G V I V P G R G C A I P p.700
. . . . . . g.72529
AATCGTCCTGGTATTTTTGTCCGAGTAGCATATTATGCAAAATGGATACACAAAATTATT c.2160
N R P G I F V R V A Y Y A K W I H K I I p.720
. . g.72556
TTAACATATAAGGTACCACAGTCATAG c.2187
L T Y K V P Q S X p.728
. . . . . . g.72616
ctgaagtaagtgtgtctgaagcacccaccaatacaactgtcttttacatgaagatttcag c.*60
. . . . . . g.72676
agaatgtggaatttaaaatgtcacttacaacaatcctaagacaactactggagagtcatg c.*120
. . . . . . g.72736
tttgttgaaattctcattaatgtttatgggtgttttctgttgttttgtttgtcagtgtta c.*180
. . . . . . g.72796
ttttgtcaatgttgaagtgaattaaggtacatgcaagtgtaataacatatctcctgaaga c.*240
. . . . . . g.72856
tacttgaatggattaaaaaaacacacaggtatatttgctggatgataaagatttcatggg c.*300
. . . . . . g.72916
aaaaaaaatcaattaatctgtctaagctgctttctgatgttggtttcttaataatgagta c.*360
. . . . . . g.72976
aaccacaaattaaatgttattttaacctcaccaaaacaatttataccttgtgtccctaaa c.*420
. . . g.73009
ttgtagccctatattaaattatattacatttca c.*453
(downstream sequence)
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