(used for variant description)
(last modified July 4, 2017)
This file was created to facilitate the description of sequence variants on transcript NM_000524.3 in the HTR1A gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_032816.1, covering HTR1A transcript NM_000524.3.
(upstream sequence)
. . . g.5033
agagggataaataaagggaagtgaggaggaaga c.-541
. . . . . . g.5093
gggagactgaaagggaaggcaggtggggagaagggggacgaaagaggcagaagagagaga c.-481
. . . . . . g.5153
agagaggaggagagagggggagagagggaaggaaggaaatagggagaggagggtcacaga c.-421
. . . . . . g.5213
gtgaccgtggaggatggggcttctcggttctagatatttctgggattggagactgtttgc c.-361
. . . . . . g.5273
tagtggggagactccagctccggcagccagttcgggagcggcaaagtaaaatggacagcg c.-301
. . . . . . g.5333
acagacagacgttccagccacctctccgccgccgggagatcctggagctgctttcaggcc c.-241
. . . . . . g.5393
aactccagtttcccagctggagcttctgaacgcgctggactgcgagagcccagggagcgc c.-181
. . . . . . g.5453
ctgaaagctgctcctcggagatacccttcgccgaagcagtaagaacttcctgcttgggtc c.-121
. . . . . . g.5513
tctgcattcccttcctccgaaacttcccaggagaagggcggaagaccccaggggaagggg c.-61
. . . . . . g.5573
cgaggcgaatcttcgcgctgctttttcttccctcccccttcccgcgccgggcgcgcaggc c.-1
. . . . . . g.5633
ATGGATGTGCTCAGCCCTGGTCAGGGCAACAACACCACATCACCACCGGCTCCCTTTGAG c.60
M D V L S P G Q G N N T T S P P A P F E p.20
. . . . . . g.5693
ACCGGCGGCAACACTACTGGTATCTCCGACGTGACCGTCAGCTACCAAGTGATCACCTCT c.120
T G G N T T G I S D V T V S Y Q V I T S p.40
. . . . . . g.5753
CTGCTGCTGGGCACGCTCATCTTCTGCGCGGTGCTGGGCAATGCGTGCGTGGTGGCTGCC c.180
L L L G T L I F C A V L G N A C V V A A p.60
. . . . . . g.5813
ATCGCCTTGGAGCGCTCCCTGCAGAACGTGGCCAATTATCTTATTGGCTCTTTGGCGGTC c.240
I A L E R S L Q N V A N Y L I G S L A V p.80
. . . . . . g.5873
ACCGACCTCATGGTGTCGGTGTTGGTGCTGCCCATGGCCGCGCTGTATCAGGTGCTCAAC c.300
T D L M V S V L V L P M A A L Y Q V L N p.100
. . . . . . g.5933
AAGTGGACACTGGGCCAGGTAACCTGCGACCTGTTCATCGCCCTCGACGTGCTGTGCTGC c.360
K W T L G Q V T C D L F I A L D V L C C p.120
. . . . . . g.5993
ACCTCATCCATCTTGCACCTGTGCGCCATCGCGCTGGACAGGTACTGGGCCATCACGGAC c.420
T S S I L H L C A I A L D R Y W A I T D p.140
. . . . . . g.6053
CCCATCGACTACGTGAACAAGAGGACGCCCCGGCGCGCCGCTGCGCTCATCTCGCTCACT c.480
P I D Y V N K R T P R R A A A L I S L T p.160
. . . . . . g.6113
TGGCTTATTGGCTTCCTCATCTCTATCCCGCCCATGCTGGGCTGGCGCACCCCGGAAGAC c.540
W L I G F L I S I P P M L G W R T P E D p.180
. . . . . . g.6173
CGCTCGGACCCCGACGCATGCACCATTAGCAAGGATCATGGCTACACTATCTATTCCACC c.600
R S D P D A C T I S K D H G Y T I Y S T p.200
. . . . . . g.6233
TTTGGAGCTTTCTACATCCCGCTGCTGCTCATGCTGGTTCTCTATGGGCGCATATTCCGA c.660
F G A F Y I P L L L M L V L Y G R I F R p.220
. . . . . . g.6293
GCTGCGCGCTTCCGCATCCGCAAGACGGTCAAAAAGGTGGAGAAGACCGGAGCGGACACC c.720
A A R F R I R K T V K K V E K T G A D T p.240
. . . . . . g.6353
CGCCATGGAGCATCTCCCGCCCCGCAGCCCAAGAAGAGTGTGAATGGAGAGTCGGGGAGC c.780
R H G A S P A P Q P K K S V N G E S G S p.260
. . . . . . g.6413
AGGAACTGGAGGCTGGGCGTGGAGAGCAAGGCTGGGGGTGCTCTGTGCGCCAATGGCGCG c.840
R N W R L G V E S K A G G A L C A N G A p.280
. . . . . . g.6473
GTGAGGCAAGGTGACGATGGCGCCGCCCTGGAGGTGATCGAGGTGCACCGAGTGGGCAAC c.900
V R Q G D D G A A L E V I E V H R V G N p.300
. . . . . . g.6533
TCCAAAGAGCACTTGCCTCTGCCCAGCGAGGCTGGTCCTACCCCTTGTGCCCCCGCCTCT c.960
S K E H L P L P S E A G P T P C A P A S p.320
. . . . . . g.6593
TTCGAGAGGAAAAATGAGCGCAACGCCGAGGCGAAGCGCAAGATGGCCCTGGCCCGAGAG c.1020
F E R K N E R N A E A K R K M A L A R E p.340
. . . . . . g.6653
AGGAAGACAGTGAAGACGCTGGGCATCATCATGGGCACCTTCATCCTCTGCTGGCTGCCC c.1080
R K T V K T L G I I M G T F I L C W L P p.360
. . . . . . g.6713
TTCTTCATCGTGGCTCTTGTTCTGCCCTTCTGCGAGAGCAGCTGCCACATGCCCACCCTG c.1140
F F I V A L V L P F C E S S C H M P T L p.380
. . . . . . g.6773
TTGGGCGCCATAATCAATTGGCTGGGCTACTCCAACTCTCTGCTTAACCCCGTCATTTAC c.1200
L G A I I N W L G Y S N S L L N P V I Y p.400
. . . . . . g.6833
GCATACTTCAACAAGGACTTTCAAAACGCGTTTAAGAAGATCATTAAGTGTAAGTTCTGC c.1260
A Y F N K D F Q N A F K K I I K C K F C p.420
g.6842
CGCCAGTGA c.1269
R Q X p.422
. . . . . . g.6902
tgacggaggagtagccggccagtcgaggctacaggatccgtcccattcactatgcttccc c.*60
. . . . . . g.6962
ccaaccctagggaatcaacacttaagataattcgccacttctcctctttctctctgctcc c.*120
. . . . . . g.7022
gctcacggcttgcagacctggtcccctccccacttcctgctccacggcagggccctttgt c.*180
. . . . . . g.7082
gcaaaggagacccagcggaggagcgttgagagcccaggaaattcagagagtttgtgagaa c.*240
. . . . . . g.7142
gcgacattggctcagacttcgcctgtatcatcagttttgatcccagtaattgcctcttct c.*300
. . . . . . g.7202
ctcttctatctcctaaatctttgcggtggatgtttaatgcttagttcaaggcagaaaatc c.*360
. . . . g.7245
caaaaaataaataaactgtacacacagccgccgcgcccactaa c.*403
(downstream sequence)
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