(used for variant description)
(last modified January 18, 2022)
This file was created to facilitate the description of sequence variants on transcript NM_001571.5 in the IRF3 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000019.9, covering IRF3 transcript NM_001571.5.
(upstream sequence)
. g.5013
ggaaacccaaaaa c.-241
. . . . . . g.5073
agggcataggggcgggaacagcccagcgggccgtcccatcggcttttgggtctgttaccc c.-181
. . . . . . g.5133
aaagaatgataaagttggttttatttcaagaagtcgatcaaaaagaaagccccagcgctc c.-121
. . . . . . g.5193
tagagctcagctgacgggaaagggggtgcgcagcctcgagtttgagagctacccggagct c.-61
. . . . . . | 02 g.6037
ccaagacaggggtgggttccagctgcccgcacgccccgaccttccatcgtag | gccggacc c.-1
. . . . . . g.6097
ATGGGAACCCCAAAGCCACGGATCCTGCCCTGGCTGGTGTCGCAGCTGGACCTGGGGCAA c.60
M G T P K P R I L P W L V S Q L D L G Q p.20
. . . . . . g.6157
CTGGAGGGCGTGGCCTGGGTGAACAAGAGCCGCACGCGCTTCCGCATCCCTTGGAAGCAC c.120
L E G V A W V N K S R T R F R I P W K H p.40
. . . . | 03 . . g.7376
GGCCTACGGCAGGATGCACAGCAGGAGGATTTCGGAATCTTCCAG | GCCTGGGCCGAGGCC c.180
G L R Q D A Q Q E D F G I F Q | A W A E A p.60
. . . . . . g.7436
ACTGGTGCATATGTTCCCGGGAGGGATAAGCCAGACCTGCCAACCTGGAAGAGGAATTTC c.240
T G A Y V P G R D K P D L P T W K R N F p.80
. . . . . . g.7496
CGCTCTGCCCTCAACCGCAAAGAAGGGTTGCGTTTAGCAGAGGACCGGAGCAAGGACCCT c.300
R S A L N R K E G L R L A E D R S K D P p.100
. . . | 04. . . g.7640
CACGACCCACATAAAATCTACGAGTTTGTGAACTCAG | GAGTTGGGGACTTTTCCCAGCCA c.360
H D P H K I Y E F V N S G | V G D F S Q P p.120
. . . . | 05 . g.8270
GACACCTCTCCGGACACCAATGGTGGAGGCAGTACTTCTGATACCCAG | GAAGACATTCTG c.420
D T S P D T N G G G S T S D T Q | E D I L p.140
. . . . . . g.8330
GATGAGTTACTGGGTAACATGGTGTTGGCCCCACTCCCAGATCCGGGACCCCCAAGCCTG c.480
D E L L G N M V L A P L P D P G P P S L p.160
. . . . . . g.8390
GCTGTAGCCCCTGAGCCCTGCCCTCAGCCCCTGCGGAGCCCCAGCTTGGACAATCCCACT c.540
A V A P E P C P Q P L R S P S L D N P T p.180
. . . . . . g.8450
CCCTTCCCAAACCTGGGGCCCTCTGAGAACCCACTGAAGCGGCTGTTGGTGCCGGGGGAA c.600
P F P N L G P S E N P L K R L L V P G E p.200
| 06 . . . . . . g.8606
G | AGTGGGAGTTCGAGGTGACAGCCTTCTACCGGGGCCGCCAAGTCTTCCAGCAGACCATC c.660
E | W E F E V T A F Y R G R Q V F Q Q T I p.220
. . . . . . g.8666
TCCTGCCCGGAGGGCCTGCGGCTGGTGGGGTCCGAAGTGGGAGACAGGACGCTGCCTGGA c.720
S C P E G L R L V G S E V G D R T L P G p.240
. . . . . . g.8726
TGGCCAGTCACACTGCCAGACCCTGGCATGTCCCTGACAGACAGGGGAGTGATGAGCTAC c.780
W P V T L P D P G M S L T D R G V M S Y p.260
. . . . . . g.8786
GTGAGGCATGTGCTGAGCTGCCTGGGTGGGGGACTGGCTCTCTGGCGGGCCGGGCAGTGG c.840
V R H V L S C L G G G L A L W R A G Q W p.280
. . . . . . g.8846
CTCTGGGCCCAGCGGCTGGGGCACTGCCACACATACTGGGCAGTGAGCGAGGAGCTGCTC c.900
L W A Q R L G H C H T Y W A V S E E L L p.300
. . . . . . g.8906
CCCAACAGCGGGCATGGGCCTGATGGCGAGGTCCCCAAGGACAAGGAAGGAGGCGTGTTT c.960
P N S G H G P D G E V P K D K E G G V F p.320
. . | 07 . . . . g.10085
GACCTGGGGCCCTTCATTGTAG | ATCTGATTACCTTCACGGAAGGAAGCGGACGCTCACCA c.1020
D L G P F I V D | L I T F T E G S G R S P p.340
. . . . . . g.10145
CGCTATGCCCTCTGGTTCTGTGTGGGGGAGTCATGGCCCCAGGACCAGCCGTGGACCAAG c.1080
R Y A L W F C V G E S W P Q D Q P W T K p.360
. | 08 . . . . g.11084
AGGCTCGTGATGGTCAAG | GTTGTGCCCACGTGCCTCAGGGCCTTGGTAGAAATGGCCCGG c.1140
R L V M V K | V V P T C L R A L V E M A R p.380
. . . . . . g.11144
GTAGGGGGTGCCTCCTCCCTGGAGAATACTGTGGACCTGCACATTTCCAACAGCCACCCA c.1200
V G G A S S L E N T V D L H I S N S H P p.400
. . . . . . g.11204
CTCTCCCTCACCTCCGACCAGTACAAGGCCTACCTGCAGGACTTGGTGGAGGGCATGGAT c.1260
L S L T S D Q Y K A Y L Q D L V E G M D p.420
. . g.11228
TTCCAGGGCCCTGGGGAGAGCTGA c.1284
F Q G P G E S X p.427
. . . . . . g.11288
gccctcgctcctcatggtgtgcctccaacccccctgttccccaccacctcaaccaataaa c.*60
. g.11307
ctggttcctgctatgatca c.*79
(downstream sequence)
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