(used for variant description)
(last modified May 12, 2017)
This file was created to facilitate the description of sequence variants on transcript NM_173484.3 in the KLF17 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000001.10 GI:224589800, covering KLF17 transcript NM_173484.3.
(upstream sequence)
. . . . . g.5058
gccgtggtggctggttccctgtctcttcagtagagagtctagaccccacccagtcttc c.-1
. . . . . . g.5118
ATGTACGGCCGACCGCAGGCTGAGATGGAACAGGAGGCTGGGGAGCTGAGCCGGTGGCAG c.60
M Y G R P Q A E M E Q E A G E L S R W Q p.20
. . | 02 . . . . g.15542
GCGGCGCACCAGGCTGCCCAG | GATAACGAGAACTCAGCGCCCATCTTGAACATGTCTTCA c.120
A A H Q A A Q | D N E N S A P I L N M S S p.40
. . . . . . g.15602
TCTTCTGGAAGCTCTGGAGTGCACACCTCTTGGAACCAAGGCCTACCAAGCATTCAGCAC c.180
S S G S S G V H T S W N Q G L P S I Q H p.60
. . . . . . g.15662
TTTCCTCACAGCGCAGAGATGCTGGGGTCCCCTTTGGTGTCTGTTGAGGCGCCGGGGCAG c.240
F P H S A E M L G S P L V S V E A P G Q p.80
. . . . . . g.15722
AATGTGAATGAAGGGGGGCCACAGTTCAGTATGCCACTGCCTGAGCGTGGTATGAGCTAC c.300
N V N E G G P Q F S M P L P E R G M S Y p.100
. . . . . . g.15782
TGCCCCCAAGCGACTCTCACTCCTTCCCGGATGATTTACTGTCAGAGAATGTCTCCCCCT c.360
C P Q A T L T P S R M I Y C Q R M S P P p.120
. . . . . . g.15842
CAGCAAGAGATGACGATTTTCAGTGGGCCCCAACTAATGCCCGTAGGAGAGCCCAATATT c.420
Q Q E M T I F S G P Q L M P V G E P N I p.140
. . . . . . g.15902
CCAAGGGTAGCCAGGCCCTTCGGTGGGAATCTAAGGATGCCCCCCAATGGGCTGCCAGTC c.480
P R V A R P F G G N L R M P P N G L P V p.160
. . . . . . g.15962
TCGGCTTCCACTGGAATCCCAATAATGTCCCACACTGGGAACCCTCCAGTGCCTTACCCT c.540
S A S T G I P I M S H T G N P P V P Y P p.180
. . . . . . g.16022
GGCCTCTCGACAGTACCTTCTGACGAAACATTGTTGGGCCCGACTGTGCCTTCCACTGAG c.600
G L S T V P S D E T L L G P T V P S T E p.200
. . . . . . g.16082
GCCCAGGCAGTGCTCCCCTCCATGGCTCAGATGTTGCCCCCGCAAGATGCCCATGACCTT c.660
A Q A V L P S M A Q M L P P Q D A H D L p.220
. . . . . . g.16142
GGGATGCCCCCAGCTGAGTCCCAGTCATTGCTGGTTTTAGGATCTCAGGACTCTCTTGTC c.720
G M P P A E S Q S L L V L G S Q D S L V p.240
. . . . . . g.16202
AGTCAGCCAGACTCTCAAGAAGGCCCATTTCTACCAGAGCAGCCCGGACCTGCTCCACAG c.780
S Q P D S Q E G P F L P E Q P G P A P Q p.260
. . . . . . g.16262
ACAGTAGAGAAGAACTCCAGGCCTCAGGAAGGGACTGGTAGAAGGGGCTCCTCAGAGGCA c.840
T V E K N S R P Q E G T G R R G S S E A p.280
. . . . . . g.16322
AGGCCTTACTGCTGCAACTACGAGAACTGCGGAAAAGCTTATACCAAACGCTCCCACCTC c.900
R P Y C C N Y E N C G K A Y T K R S H L p.300
. . | 03 . . . . g.16697
GTGAGCCACCAGCGCAAGCACACAG | GTGAGAGGCCATATTCTTGCAACTGGGAAAGTTGT c.960
V S H Q R K H T G | E R P Y S C N W E S C p.320
. . . . . . g.16757
TCATGGTCTTTCTTCCGTTCTGATGAGCTTAGACGACATATGCGGGTACACACCAGATAT c.1020
S W S F F R S D E L R R H M R V H T R Y p.340
. . . . . . g.16817
CGACCATATAAATGTGATCAGTGCAGCCGGGAGTTCATGAGGTCTGACCATCTCAAGCAA c.1080
R P Y K C D Q C S R E F M R S D H L K Q p.360
. . . . . . g.16877
CACCAGAAGACTCATCGGCCGGGACCCTCAGACCCACAGGCCAACAACAACAATGGAGAG c.1140
H Q K T H R P G P S D P Q A N N N N G E p.380
. . . g.16907
CAGGACAGTCCTCCTGCTGCTGGTCCTTAG | c.1171
Q D S P P A A G P X p.389
| 04 . . . . . . g.19448
| gtgaatgaagaaggaagaggattccaggctgagagcactggacgtggcaactgttcagag c.*60
. . . . . . g.19508
gagaggcagtcttcaagttctacattcattcagaaaaatgttttttgagcctacaatact c.*120
. . . . . . g.19568
gagcgcaacaaggctgtggagacccatggtgaggagcatggagttaactaaaggatgtgt c.*180
. . . . . . g.19628
cagggaagaaagacttctcaaggaggtgcctccatcagacccaaaggactcatgggggct c.*240
. . . . . . g.19688
agctgcacctcacatttcttggacatataccgttggacatgtctatcttctggaaactat c.*300
. . . . . . g.19748
ggcatggacagtaaggattcagaagtgcatgaaggcaccctgcctctgcagagcagaaag c.*360
. . . . . . g.19808
atcatagacaacatttatgaatgtgcccagtgctgccaagaagagaagccggtcctctgc c.*420
. . . . . . g.19868
aggctcaagcctatctgggcctctggggaagccccacagccttggctgtgcctgcccctg c.*480
. . . . . . g.19928
ccctctcacccctaccctgaccttgtcctacttcactgcctttgtctgtgttactagtgg c.*540
. . . . . . g.19988
ccccagtatacctgggatggacatccaggtgcccttcatccaagctcctatgtgagggga c.*600
. . . . . . g.20048
atggacattattaaaagaacaggggcagaagtggctcatttatgacccattcactagccc c.*660
. . . . . . g.20108
cagggattgaagtcttgggtactcaaagtgtctttctaccagggcaccagatcccttcca c.*720
. . . . . . g.20168
tggagcaggtcatctcgggttcactgggccagggatggtctctgttccccagcccacctg c.*780
. . . . . . g.20228
gctcacacacagcctcatgggtagggtcagcaaaccagatggcttgttgttggaatgtag c.*840
. . . . . . g.20288
gatgagaggcctgcttggtgacctagcattttcaccaagaagtggacgtggagaggacca c.*900
. . . . . . g.20348
gagtgatcaagggtgtatgatgtgcactacaatggtgggcaaaacaggctcctgctcttg c.*960
. . . . . . g.20408
tggaggtcacaatctagcggagaaaggatgttactagaagtacacaaattgggcccggcg c.*1020
. . . . . . g.20468
cgatggctcacgcctgtaatcccagcacttttggaggccgaggcaggcggatcatttgag c.*1080
. . . . . . g.20528
gttagagattcgagaccagccgggccaacatggtgaaaccccatctctacaaaaaataca c.*1140
. . . . . . g.20588
aaaattagcctggcatatggcgggtaccgtaatcctagctactcgggagactgacgggag c.*1200
. . . . . . g.20648
aatcgcttgaacccaggaggcggaggttgcagtgagctcagatctcaccattgcactcca c.*1260
. . . . . . g.20708
gcctgggcgactgagcgagactctatctcaaaacaatcaaaacaaaaaagacctgtggac c.*1320
. . . . . . g.20768
tctagtagattttgaatcctgcctctgccatttcctggctatgaggtgtcttgagaaatt c.*1380
. . . . . . g.20828
tacttgtcactcttgcttctgatagtaaaggggatggtgcgatagattcaagatggagag c.*1440
. . . . . . g.20888
ataaggttaagtgttttctttggctgcaacatggagattagattagagcaaggatgtaag c.*1500
. . . . . . g.20948
ggagaggaagggacatagcagtatttcaggtgagagtcaaggtggctttggctagggtgt c.*1560
. . . . . . g.21008
gagagtggaggtagggagaagtaggaaagtgatagttaactggatttgttaggtgagggt c.*1620
. . . . . . g.21068
gaggccaagggtgacttccaggttcctgacttgtgttataagtaacacagaagaagaatg c.*1680
. . . . . . g.21128
gatgaacttgattcgttttccattgattgtgatatctatcatacctgcaaaaaatatttt c.*1740
. . . . . . g.21188
gtatatatccaatttaataataaatgcactcatgttaggaaggtcaaaaaaaaggaaaaa c.*1800
. . . . . . g.21248
agaaaaataataaaaaataataaaaatccttaggataacttgaggccaggagtttgagac c.*1860
. . . . g.21291
cagtgtgaccttgtctctgtaaaaaataaaattaaaagaaaaa c.*1903
(downstream sequence)
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