(used for variant description)
(last modified December 2, 2015)
This file was created to facilitate the description of sequence variants on transcript NM_000421.3 in the KRT10 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_008405.1, covering KRT10 transcript NM_000421.3.
(upstream sequence)
. . g.5026
cactccctgggctaaacagcatcacc c.-1
. . . . . . g.5086
ATGTCTGTTCGATACAGCTCAAGCAAGCACTACTCTTCCTCCCGCAGTGGAGGAGGAGGA c.60
M S V R Y S S S K H Y S S S R S G G G G p.20
. . . . . . g.5146
GGAGGAGGAGGATGTGGAGGAGGAGGAGGAGTGTCATCCCTAAGAATTTCTAGCAGCAAA c.120
G G G G C G G G G G V S S L R I S S S K p.40
. . . . . . g.5206
GGCTCCCTTGGTGGAGGATTTAGCTCAGGGGGGTTCAGTGGTGGCTCTTTTAGCCGTGGG c.180
G S L G G G F S S G G F S G G S F S R G p.60
. . . . . . g.5266
AGCTCTGGTGGGGGCTGCTTTGGGGGCTCATCAGGTGGCTATGGAGGATTAGGAGGTTTT c.240
S S G G G C F G G S S G G Y G G L G G F p.80
. . . . . . g.5326
GGTGGAGGTAGCTTTCGTGGAAGCTATGGAAGTAGCAGCTTTGGTGGGAGTTATGGAGGC c.300
G G G S F R G S Y G S S S F G G S Y G G p.100
. . . . . . g.5386
AGCTTTGGAGGGGGCAGTTTCGGAGGTGGCAGCTTTGGTGGGGGCAGCTTTGGTGGAGGC c.360
S F G G G S F G G G S F G G G S F G G G p.120
. . . . . . g.5446
GGCTTTGGTGGAGGCGGCTTTGGAGGAGGCTTTGGTGGTGGATTTGGAGGAGATGGTGGC c.420
G F G G G G F G G G F G G G F G G D G G p.140
. . . . . . g.5506
CTTCTCTCTGGAAATGAAAAAGTAACCATGCAGAATCTGAATGACCGCCTGGCTTCCTAC c.480
L L S G N E K V T M Q N L N D R L A S Y p.160
. . . . . . g.5566
TTGGACAAAGTTCGGGCTCTGGAAGAATCAAACTATGAGCTGGAAGGCAAAATCAAGGAG c.540
L D K V R A L E E S N Y E L E G K I K E p.180
. . . . . . g.5626
TGGTATGAAAAGCATGGCAACTCACATCAGGGGGAGCCTCGTGACTACAGCAAATACTAC c.600
W Y E K H G N S H Q G E P R D Y S K Y Y p.200
. . | 02. . . . g.6527
AAAACCATCGATGACCTTAAAAATCAG | ATTCTCAACCTAACAACTGATAATGCCAACATC c.660
K T I D D L K N Q | I L N L T T D N A N I p.220
. . . . . | 03 . g.6954
CTGCTTCAGATCGACAATGCCAGGCTGGCAGCTGATGACTTCAGGCTGAA | GTATGAGAAT c.720
L L Q I D N A R L A A D D F R L K | Y E N p.240
. . . . . . g.7014
GAGGTAGCTCTGCGCCAGAGCGTGGAGGCTGACATCAACGGCCTGCGTAGGGTGCTGGAT c.780
E V A L R Q S V E A D I N G L R R V L D p.260
. . . . . . g.7074
GAGCTGACCCTGACCAAGGCTGACCTGGAGATGCAAATTGAGAGCCTGACTGAAGAGCTG c.840
E L T L T K A D L E M Q I E S L T E E L p.280
. . | 04. . . . g.7221
GCCTATCTGAAGAAGAACCACGAGGAG | GAAATGAAAGACCTTCGAAATGTGTCCACTGGT c.900
A Y L K K N H E E | E M K D L R N V S T G p.300
. . . . . . g.7281
GATGTGAATGTGGAAATGAATGCTGCCCCGGGTGTTGATCTGACTCAACTTCTGAATAAC c.960
D V N V E M N A A P G V D L T Q L L N N p.320
. . . . . . g.7341
ATGAGAAGCCAATATGAACAACTTGCTGAACAAAACCGCAAAGATGCTGAAGCCTGGTTC c.1020
M R S Q Y E Q L A E Q N R K D A E A W F p.340
| 05 . . . . . g.7488
AATGAAAAG | AGCAAGGAACTGACTACAGAAATTGATAATAACATTGAACAGATATCCAGC c.1080
N E K | S K E L T T E I D N N I E Q I S S p.360
. . . . . . g.7548
TATAAATCTGAGATTACTGAATTGAGACGTAATGTACAAGCTCTGGAGATAGAACTACAG c.1140
Y K S E I T E L R R N V Q A L E I E L Q p.380
. | 06 . . . . . g.7922
TCCCAACTGGCCTTG | AAACAATCCCTGGAAGCCTCCTTGGCAGAAACAGAAGGTCGCTAC c.1200
S Q L A L | K Q S L E A S L A E T E G R Y p.400
. . . . . . g.7982
TGTGTGCAGCTCTCACAGATTCAGGCCCAGATATCCGCTCTGGAAGAACAGTTGCAACAG c.1260
C V Q L S Q I Q A Q I S A L E E Q L Q Q p.420
. . . . . . g.8042
ATTCGAGCTGAAACCGAGTGCCAGAATACTGAATACCAACAACTCCTGGATATTAAGATC c.1320
I R A E T E C Q N T E Y Q Q L L D I K I p.440
. . . . . | 07 . g.8457
CGACTGGAGAATGAAATTCAAACCTACCGCAGCCTGCTAGAAGGAGAGGGAAG | TTCCGGA c.1380
R L E N E I Q T Y R S L L E G E G S | S G p.460
. . . . . . g.8517
GGCGGCGGACGCGGCGGCGGAAGTTTCGGCGGCGGCTACGGCGGCGGAAGCTCCGGCGGC c.1440
G G G R G G G S F G G G Y G G G S S G G p.480
. . . . . . g.8577
GGAAGCTCCGGCGGCGGCCACGGCGGCGGCCACGGCGGCAGTTCCGGCGGCGGCTACGGA c.1500
G S S G G G H G G G H G G S S G G G Y G p.500
. . . . . . g.8637
GGCGGAAGCTCCGGCGGCGGAAGCTCCGGCGGCGGCTACGGGGGCGGAAGCTCCAGCGGC c.1560
G G S S G G G S S G G G Y G G G S S S G p.520
. . . . . . g.8697
GGCCACGGCGGCAGTTCCAGCGGCGGCTACGGTGGTGGCAGTTCCGGCGGCGGCGGCGGC c.1620
G H G G S S S G G Y G G G S S G G G G G p.540
. . . . . . g.8757
GGCTACGGGGGCGGCAGCTCCGGCGGCGGCAGCAGCTCCGGCGGCGGATACGGCGGCGGC c.1680
G Y G G G S S G G G S S S G G G Y G G G p.560
. . . . . . g.8817
AGCTCCAGCGGAGGCCACAAGTCCTCCTCTTCCGGGTCCGTGGGCGAGTCTTCATCTAAG c.1740
S S S G G H K S S S S G S V G E S S S K p.580
| 08 g.9181
GGACCAAG | ATACTAA c.1755
G P R | Y X p.584
. . . . . . g.9241
caaaaccagagtaatcaagacaattattgaagaggtggcgcccgacggtagagttctttc c.*60
. . . . . . g.9301
atctatggttgaatcagaaaccaagaaacactactattaaactgcatcaagaggaaagag c.*120
. . . . . . g.9361
tctcccttcacacagaccattatttacagatgcatggaaaacaaagtctccaagaaaaca c.*180
. . . . . . g.9421
cttctgtcttgatggtctatggaaatagaccttgaaaataaggtgtctacaaggtgtttt c.*240
. . . . . . g.9481
gtggtttctgtatttcttcttttcactttaccagaaagtgttctttaatggaaagaaaaa c.*300
. . . . . g.9540
caactttctgttctcatttactaatgaatttcaataaactttcttactgatgcaaacta c.*359
(downstream sequence)
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