(used for variant description)
(last modified December 2, 2015)
This file was created to facilitate the description of sequence variants on transcript NM_000226.3 in the KRT9 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_008300.1, covering KRT9 transcript NM_000226.3.
(upstream sequence)
g.5006
ccctgc c.-61
. . . . . . g.5066
acttgggagccggtagcactcctatcactgcttctcaacccgtgagctaccagctgtgtc c.-1
. . . . . . g.5126
ATGAGCTGCAGACAGTTCTCCTCGTCCTACTTGAGCCGCAGCGGCGGGGGTGGCGGGGGC c.60
M S C R Q F S S S Y L S R S G G G G G G p.20
. . . . . . g.5186
GGCCTGGGCAGCGGGGGCAGCATAAGGTCTTCCTACAGCCGCTTCAGCTCCTCAGGGGGC c.120
G L G S G G S I R S S Y S R F S S S G G p.40
. . . . . . g.5246
GGTGGAGGAGGGGGCCGATTCAGCTCTTCTAGTGGCTATGGTGGGGGAAGCTCTCGTGTC c.180
G G G G G R F S S S S G Y G G G S S R V p.60
. . . . . . g.5306
TGTGGGAGGGGAGGCGGTGGCAGTTTTGGCTACAGCTACGGCGGAGGATCTGGGGGTGGT c.240
C G R G G G G S F G Y S Y G G G S G G G p.80
. . . . . . g.5366
TTTAGTGCCAGTAGTTTAGGCGGTGGCTTTGGGGGTGGTTCCAGAGGTTTTGGTGGTGCT c.300
F S A S S L G G G F G G G S R G F G G A p.100
. . . . . . g.5426
TCTGGAGGAGGCTATAGTAGTTCTGGGGGTTTTGGAGGTGGCTTTGGTGGTGGTTCTGGA c.360
S G G G Y S S S G G F G G G F G G G S G p.120
. . . . . . g.5486
GGTGGCTTTGGTGGTGGCTATGGGAGTGGGTTTGGGGGGTTTGGGGGCTTTGGAGGTGGT c.420
G G F G G G Y G S G F G G F G G F G G G p.140
. . . . . . g.5546
GCTGGAGGAGGTGATGGTGGTATTCTGACTGCTAATGAGAAGAGCACCATGCAGGAACTC c.480
A G G G D G G I L T A N E K S T M Q E L p.160
. . . . . . g.5606
AATTCTCGGCTGGCCTCTTACTTGGATAAGGTGCAGGCTCTAGAGGAGGCCAACAACGAC c.540
N S R L A S Y L D K V Q A L E E A N N D p.180
. . . . . . g.5666
CTGGAGAATAAGATCCAGGATTGGTACGACAAGAAGGGACCTGCTGCTATCCAGAAGAAC c.600
L E N K I Q D W Y D K K G P A A I Q K N p.200
. . . . | 02 . . g.6856
TACTCCCCTTATTATAACACTATTGATGATCTCAAGGACCAG | ATTGTGGACCTGACAGTG c.660
Y S P Y Y N T I D D L K D Q | I V D L T V p.220
. . . . . . g.6916
GGCAACAACAAAACTCTCCTGGACATTGACAACACTCGCATGACACTGGATGACTTCAGG c.720
G N N K T L L D I D N T R M T L D D F R p.240
| 03 . . . . . . g.7098
ATAAA | GTTTGAGATGGAGCAAAACCTGCGGCAAGGAGTGGATGCTGACATCAATGGCCTG c.780
I K | F E M E Q N L R Q G V D A D I N G L p.260
. . . . . . g.7158
CGGCAGGTGCTGGACAATCTGACCATGGAGAAGTCTGACCTGGAGATGCAGTATGAGACT c.840
R Q V L D N L T M E K S D L E M Q Y E T p.280
. . . . | 04 . . g.7489
CTGCAGGAGGAGCTGATGGCCCTCAAGAAGAATCATAAGGAG | GAGATGAGTCAGCTGACT c.900
L Q E E L M A L K K N H K E | E M S Q L T p.300
. . . . . . g.7549
GGGCAGAACAGTGGAGATGTCAATGTGGAGATAAACGTTGCTCCTGGCAAAGATCTCACC c.960
G Q N S G D V N V E I N V A P G K D L T p.320
. . . . . . g.7609
AAGACCCTCAATGACATGCGTCAGGAGTATGAGCAGCTCATTGCTAAGAACAGAAAGGAC c.1020
K T L N D M R Q E Y E Q L I A K N R K D p.340
. . | 05 . . . . g.8461
ATCGAGAATCAATATGAGACTCAG | ATAACCCAGATCGAGCATGAGGTATCCAGTAGTGGT c.1080
I E N Q Y E T Q | I T Q I E H E V S S S G p.360
. . . . . . g.8521
CAGGAGGTGCAGTCCAGTGCCAAGGAGGTGACCCAGCTCCGGCACGGTGTCCAGGAGTTG c.1140
Q E V Q S S A K E V T Q L R H G V Q E L p.380
. . . | 06 . . . g.8703
GAGATTGAGCTGCAGTCTCAGCTCAGCAAG | AAAGCAGCTCTGGAGAAGAGCTTGGAAGAC c.1200
E I E L Q S Q L S K | K A A L E K S L E D p.400
. . . . . . g.8763
ACGAAGAACCGCTACTGTGGCCAGCTGCAGATGATCCAGGAGCAGATCAGTAACTTGGAG c.1260
T K N R Y C G Q L Q M I Q E Q I S N L E p.420
. . . . . . g.8823
GCCCAGATCACTGACGTCCGGCAAGAGATCGAGTGCCAGAATCAGGAATACAGCCTTCTG c.1320
A Q I T D V R Q E I E C Q N Q E Y S L L p.440
. . . . . . g.8883
CTCAGCATTAAGATGCGGCTGGAGAAGGAAATCGAGACCTACCACAACCTCCTTGAGGGA c.1380
L S I K M R L E K E I E T Y H N L L E G p.460
. | 07 . . . . . g.9354
GGCCAGGAAGACTT | TGAATCCTCCGGAGCTGGAAAAATTGGCCTTGGAGGTCGAGGAGGA c.1440
G Q E D F | E S S G A G K I G L G G R G G p.480
. . . . . . g.9414
AGTGGAGGCAGTTATGGAAGAGGATCCAGGGGAGGAAGTGGAGGCAGCTATGGTGGAGGA c.1500
S G G S Y G R G S R G G S G G S Y G G G p.500
. . . . . . g.9474
GGAAGTGGAGGTGGCTATGGTGGAGGAAGTGGGTCCAGGGGAGGAAGTGGAGGCAGCTAC c.1560
G S G G G Y G G G S G S R G G S G G S Y p.520
. . . . . . g.9534
GGTGGAGGAAGTGGTTCTGGAGGAGGTAGTGGAGGTGGCTATGGTGGAGGAAGTGGAGGT c.1620
G G G S G S G G G S G G G Y G G G S G G p.540
. . . . . . g.9594
GGCCATAGCGGAGGAAGTGGAGGTGGTCATAGTGGAGGAAGTGGGGGCAACTATGGAGGA c.1680
G H S G G S G G G H S G G S G G N Y G G p.560
. . . . . . g.9654
GGAAGTGGCTCTGGAGGAGGAAGTGGGGGTGGCTATGGTGGAGGAAGTGGGTCCAGGGGA c.1740
G S G S G G G S G G G Y G G G S G S R G p.580
. . . . . . g.9714
GGAAGTGGAGGCAGCCATGGTGGAGGAAGTGGTTTTGGAGGTGAAAGTGGAGGCAGCTAC c.1800
G S G G S H G G G S G F G G E S G G S Y p.600
. . . . . . g.9774
GGAGGCGGTGAAGAAGCGAGTGGAAGTGGTGGCGGCTACGGAGGAGGAAGCGGAAAATCA c.1860
G G G E E A S G S G G G Y G G G S G K S p.620
. g.9786
TCCCATTCCTAG | c.1873
S H S X p.623
. . . . | 08 . . g.10926
tcttcttcctcaaaatctggtgaccaagatgagacaaaag | gcttcctttcgcgatactag c.*60
. . . . . . g.10986
agcctctgtaaacttctcctgcccagccccagctgagcatccccagatgggcagactccc c.*120
. . . . . . g.11046
gatgaagcctgcttattggatcctgacatcaggaatagctggcaacaagcccctgtgccc c.*180
. . . . . . g.11106
gtttgggactgaactgacttggcatatgtgcctctggctttccattggcttccaaccctg c.*240
. . . . . . g.11166
cttggctttgatgccttcagggttggggagacagacctctttcctctctctggcctgggg c.*300
. . . . . g.11218
tgctctcacaccctgcacgatcttgactataataaagcttccctactgcaaa c.*352
(downstream sequence)
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