(used for variant description)
(last modified December 19, 2022)
This file was created to facilitate the description of sequence variants on transcript NM_001040167.1 in the LFNG gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000007.13, covering LFNG transcript NM_001040167.1.
(upstream sequence)
. g.12333
gcggccgccaccccacc c.-1
. . . . . . g.12393
ATGCTCAAGCGCTGCGGCCGGCGCCTGCTGCTGGCGCTGGCGGGCGCGCTGCTCGCCTGC c.60
M L K R C G R R L L L A L A G A L L A C p.20
. . . . . . g.12453
CTGCTGGTGCTCACCGCCGACCCGCCGCCGCCTCCACTGCCCGCCGAGCGCGGCCGGCGC c.120
L L V L T A D P P P P P L P A E R G R R p.40
. . . . . . g.12513
GCGCTGCGCAGCCTGGCGGGCCCCGCGGGGGCTGCCCCGGCGCCCGGGCTGGGGGCGGCG c.180
A L R S L A G P A G A A P A P G L G A A p.60
. . . . . . g.12573
GCGGCGGCGCCCGGGGCGCTGGTCCGCGACGTGCACAGTCTGTCCGAGTACTTCAGCCTG c.240
A A A P G A L V R D V H S L S E Y F S L p.80
. . . . . . g.12633
CTCACCCGCGCGCGCAGAGATGCGGGCCCGCCGCCCGGGGCTGCCCCCCGCCCCGCCGAC c.300
L T R A R R D A G P P P G A A P R P A D p.100
. . . . . . g.12693
GGCCACCCGCGCCCCCTGGCCGAGCCGCTCGCGCCCCGAGACGTCTTCATCGCTGTCAAG c.360
G H P R P L A E P L A P R D V F I A V K p.120
. . . . . . g.12753
ACCACCAAAAAGTTCCACCGCGCGCGCCTCGACCTGCTGCTGGAGACCTGGATCTCGCGC c.420
T T K K F H R A R L D L L L E T W I S R p.140
. | 02 . . . . . g.17214
CACAAGGAGATG | ACGTTCATCTTCACTGACGGGGAAGATGAGGCCCTGGCCAGGCACACG c.480
H K E M | T F I F T D G E D E A L A R H T p.160
| 03 . . . . . . g.17749
G | GCAACGTGGTCATCACAAACTGCTCGGCCGCCCACAGCCGCCAGGCGCTGTCCTGCAAG c.540
G | N V V I T N C S A A H S R Q A L S C K p.180
. . . . | 04 . . g.17904
ATGGCCGTGGAGTATGACCGCTTCATCGAGTCCGGCAGGAA | GTGGTTCTGCCACGTGGAC c.600
M A V E Y D R F I E S G R K | W F C H V D p.200
. . . . . . g.17964
GATGACAACTACGTCAACCTGCGGGCCCTGCTGCGGCTGCTGGCCAGCTACCCGCACACG c.660
D D N Y V N L R A L L R L L A S Y P H T p.220
. . . . . . g.18024
CGGGACGTCTACGTCGGCAAGCCCAGCCTGGACAGGCCCATCCAGGCCATGGAGCGGGTC c.720
R D V Y V G K P S L D R P I Q A M E R V p.240
. | 05 . . . . . g.18201
AGCGAGAACAAGGTG | CGTCCTGTCCACTTCTGGTTTGCCACGGGCGGCGCTGGCTTCTGC c.780
S E N K V | R P V H F W F A T G G A G F C p.260
. . . . | 06 . . g.18734
ATCAGCCGTGGGCTGGCTCTGAAGATGAGCCCGTGGGCCAG | CGGGGGTCACTTCATGAAT c.840
I S R G L A L K M S P W A S | G G H F M N p.280
. . . . . . g.18794
ACGGCTGAGCGGATCCGGCTGCCTGATGACTGCACCATCGGCTACATCGTGGAGGCCCTG c.900
T A E R I R L P D D C T I G Y I V E A L p.300
. . . . . . g.18854
CTGGGTGTGCCCCTCATCCGCAGCGGCCTCTTCCACTCCCACCTGGAGAACCTGCAGCAG c.960
L G V P L I R S G L F H S H L E N L Q Q p.320
. . | 07. . . . g.19340
GTGCCCACCTCGGAGCTCCACGAGCAG | GTGACGCTGAGCTACGGTATGTTTGAAAACAAG c.1020
V P T S E L H E Q | V T L S Y G M F E N K p.340
. . . . . | 08 . g.19624
CGGAACGCCGTCCACGTGAAGGGGCCCTTCTCGGTGGAGGCCGACCCATCCAG | GTTCCGC c.1080
R N A V H V K G P F S V E A D P S R | F R p.360
. . . . . . g.19684
TCCATCCACTGCCACCTGTACCCGGACACACCCTGGTGTCCCCGCACTGCCATCTTCTAG c.1140
S I H C H L Y P D T P W C P R T A I F X p.379
. . . . . . g.19744
tggccatggctgagacccaatccctgggcgcccctggtatccaaagggcccagggaccct c.*60
. . . . . . g.19804
gttgcgctgccctggcctcggcattcgaggctcccctagggccgtgcctgtgcgtgtgcg c.*120
. . . . . . g.19864
tgtgcgtgtgtgtgtgtgtgtactgcatgcccacccgggtagcaggctgctgggcagttc c.*180
. . . . . . g.19924
tgctctgtggaggggcgggcaccagcgccacttatgtgcctctgctccgagggccagtgg c.*240
. . . . . . g.19984
gctgcagggcctgcttggaggaaggatttgtgtgtcggaggccactccgagggcaattct c.*300
. . . . . . g.20044
gttaggatttttggatctttctacagctacggggctccgggctactttgcagggatgcga c.*360
. . . . . . g.20104
tgcgtaggtgcctttctcttcctgctgaccacaagctctgtgctgggggtacctgtgccc c.*420
. . . . . . g.20164
tgaagtcctggcccctgtgtcatagccccaagtacgactcactgagccatgctcattgca c.*480
. . . . . . g.20224
ggggaggctgggtctgggggtgcgtgacccaatccccttcctcctggcctggacgctgtg c.*540
. . . . . . g.20284
gcttaagagtaacagcagccaccgcccagttccagtggccccacgaagcccccagtggct c.*600
. . . . . . g.20344
ggctgtccagctgggcaaacagtggcacccctcccagctcttctgagtggggagtcttcc c.*660
. . . . . . g.20404
aggcctcctcagaggtcttccctttgcctccccaggacagggtgagtcagagctcagcat c.*720
. . . . . . g.20464
ttaatctcctctccaaagtagagagcaagtcgcccacagtgggcgtgtctgtaaatattg c.*780
. . . . . . g.20524
tgacagtatttttttactgtgctgttttttttgaaaggggatgggtaaaaagtagggtgt c.*840
. . . . . . g.20584
tcttgttttttgcttgggagggtgggggtgggggagggtcttattttatcttatcttttc c.*900
. . . . . . g.20644
tgtggatcagaaaaaacagaagccaaactcggggtcatctttgtttttaaagctgaagtg c.*960
. . . . . . g.20704
ggactgtctggcactctgtgtatttatgcgttccagcatctggaacctcccatccctgcc c.*1020
. . . . . . g.20764
ctcctcctgtgtagctgccacctccccgctgggcccagcatggctcacctgtcccgtggg c.*1080
. . . . . . g.20824
ctgtgtttcttgttgtttttctctttgcaaagacatagctaggaaagcgaatgataaggg c.*1140
. . . . . . g.20884
aaaagttctcagggaattgaagtgttgttgctatggtgacgtccttttgctgtgaataaa c.*1200
. g.20901
ggtgctctttgcagcaa c.*1217
(downstream sequence)
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