(used for variant description)
(last modified May 27, 2019)
This file was created to facilitate the description of sequence variants on transcript NM_006499.4 in the LGALS8 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000001.10, covering LGALS8 transcript NM_006499.4.
(upstream sequence)
. . g.10246
tggacttggatccgaggcaga c.-361
. . . . . . g.10306
cgaggaagctgagaaaaccctggcgttgaccccgtggacctgggcgccccgggaaggcca c.-301
. . . . . . g.10366
gcgcttggtccaggcaggcggggcctgtgcggtgaccaccctggtcctgaaaagtcccag c.-241
. . . . . | 02 . g.10771
ccccgagcgccctccctcctagacctggaggcctggaacagccag | ccgcccacggacgcc c.-181
. . . . . . g.10831
agagccgggaaccctgacggcacttagctgctgacaaacaacctgctccgtggagcgcct c.-121
. . | 03 . . . . g.12797
gaaacaccagtctttgg | ggccagtgcctcagtttcaatccaggtaacctttaaatgaaac c.-61
. . . . . . g.12857
ttgcctaaaatcttaggtcatacacagaagagactccaatcgacaagaagctggaaaaga c.-1
. . . . | 04 . . g.24298
ATGATGTTGTCCTTAAACAACCTACAGAATATCATCTATAACCCG | GTAATCCCGTTTGTT c.60
M M L S L N N L Q N I I Y N P | V I P F V p.20
. . . . . . g.24358
GGCACCATTCCTGATCAGCTGGATCCTGGAACTTTGATTGTGATACGTGGGCATGTTCCT c.120
G T I P D Q L D P G T L I V I R G H V P p.40
. | 05 . . . . . g.25711
AGTGACGCAGACAG | ATTCCAGGTGGATCTGCAGAATGGCAGCAGCATGAAACCTCGAGCC c.180
S D A D R | F Q V D L Q N G S S M K P R A p.60
. . . . . . g.25771
GATGTGGCCTTTCATTTCAATCCTCGTTTCAAAAGGGCCGGCTGCATTGTTTGCAATACT c.240
D V A F H F N P R F K R A G C I V C N T p.80
. . . . . . g.25831
TTGATAAATGAAAAATGGGGACGGGAAGAGATCACCTATGACACGCCTTTCAAAAGAGAA c.300
L I N E K W G R E E I T Y D T P F K R E p.100
. . . . | 06 . . g.27365
AAGTCTTTTGAGATCGTGATTATGGTGCTGAAGGACAAATTCCAG | GTGGCTGTAAATGGA c.360
K S F E I V I M V L K D K F Q | V A V N G p.120
. . . . . . g.27425
AAACATACTCTGCTCTATGGCCACAGGATCGGCCCAGAGAAAATAGACACTCTGGGCATT c.420
K H T L L Y G H R I G P E K I D T L G I p.140
. . . . | 07 . . g.28455
TATGGCAAAGTGAATATTCACTCAATTGGTTTTAGCTTCAGCTCG | GACTTACAAAGTACC c.480
Y G K V N I H S I G F S F S S | D L Q S T p.160
. . . . | 08 . . g.29565
CAAGCATCTAGTCTGGAACTGACAGAGATAAGTAGAGAAAAT | GTTCCAAAGTCTGGCACG c.540
Q A S S L E L T E I S R E N | V P K S G T p.180
| 09 . . . . . g.29752
CCCCAGCTT | CCTAGTAATAGAGGAGGAGACATTTCTAAAATCGCACCCAGAACTGTCTAC c.600
P Q L | P S N R G G D I S K I A P R T V Y p.200
. . . . . . g.29812
ACCAAGAGCAAAGATTCGACTGTCAATCACACTTTGACTTGCACCAAAATACCACCTATG c.660
T K S K D S T V N H T L T C T K I P P M p.220
. | 10 . . . . . g.30391
AACTATGTGTCAAAG | AGGCTGCCATTCGCTGCAAGGTTGAACACCCCCATGGGCCCTGGA c.720
N Y V S K | R L P F A A R L N T P M G P G p.240
. . . . | 11 . . g.31552
CGAACTGTCGTCGTTAAAGGAGAAGTGAATGCAAATGCCAAAAG | CTTTAATGTTGACCTA c.780
R T V V V K G E V N A N A K S | F N V D L p.260
. . . . . . g.31612
CTAGCAGGAAAATCAAAGGATATTGCTCTACACTTGAACCCACGCCTGAATATTAAAGCA c.840
L A G K S K D I A L H L N P R L N I K A p.280
. . . . . . g.31672
TTTGTAAGAAATTCTTTTCTTCAGGAGTCCTGGGGAGAAGAAGAGAGAAATATTACCTCT c.900
F V R N S F L Q E S W G E E E R N I T S p.300
. . . | 12 . . . g.34828
TTCCCATTTAGTCCTGGGATGTACTTTGAG | ATGATAATTTATTGTGATGTTAGAGAATTC c.960
F P F S P G M Y F E | M I I Y C D V R E F p.320
. . . . . . g.34888
AAGGTTGCAGTAAATGGCGTACACAGCCTGGAGTACAAACACAGATTTAAAGAGCTCAGC c.1020
K V A V N G V H S L E Y K H R F K E L S p.340
. . . . . . g.34948
AGTATTGACACGCTGGAAATTAATGGAGACATCCACTTACTGGAAGTAAGGAGCTGGTAG c.1080
S I D T L E I N G D I H L L E V R S W X p.359
. . . . . . g.35008
cctacctacacagctgctacaaaaaccaaaatacagaatggcttctgtgatactggcctt c.*60
. . . . . . g.35068
gctgaaacgcatctcactgtcattctattgtttatattgttaaaatgagcttgtgcacca c.*120
. . . . . . g.35128
ttaggtcctgctgggtgttctcagtccttgccatgaagtatggtggtgtctagcactgaa c.*180
. . . . . . g.35188
tggggaaactgggggcagcaacacttatagccagttaaagccactctgccctctctccta c.*240
. . . . . . g.35248
ctttggctgactcttcaagaatgccattcaacaagtatttatggagtacctactataata c.*300
. . . . . . g.35308
cagtagctaacatgtattgagcacagattttttttggtaaaactgtgaagagctaggata c.*360
. . . . . . g.35368
tatacttggtgaaacaaaccagtatgttccctgttctcttgagcttcgactcttctgtgc c.*420
. . . . . . g.35428
gctactgctgcgcactgctttttctacaggcattacatcaactcctaaggggtcctctgg c.*480
. . . . . . g.35488
gattagttatgcagatattaaatcacccgaagacactaacttacagaagacacaactcct c.*540
. . . . . . g.35548
tccccagtgatcactgtcataaccagtgctctaccgtatcccatcactgaggactgatgt c.*600
. . . . . . g.35608
tgactgacatcattttctttatcgtaataaacatgtggctctattagctgcaagctttac c.*660
. . . . . . g.35668
caagtaattggcatgacatctgagcacagaaattaaggcaaaaaaccaaagcaaaacaaa c.*720
. . . . . . g.35728
tacatggtgctgaaattaacttgatgccaagcccaaggcagctgatttctgtgtatttga c.*780
. . . . . . g.35788
acttagggcaaatcagagtctacacagacgcctacagaaagtttcaggaagaggcaagat c.*840
. . . . . . g.35848
gcattcaatttgaaagatatttatgggcaacaaagtaaggtcaggattagacttcaggca c.*900
. . . . . . g.35908
ttcataaggcaggcactatcagaaagtgtacgccaactaagggacccacaaagcaggcag c.*960
. . . . . . g.35968
aggtaatgcagaaatctgttttgttcccatgaaatcaccaatcaaggcctccgttcttct c.*1020
. . . . . . g.36028
aaagattagtccatcatcattagcaactgagatcaaagcactcttccactttacgtgatt c.*1080
. . . . . . g.36088
aaaatcaaacctgtatcagcaagttaaatggttccatttctgtgatttttctattatttg c.*1140
. . . . . . g.36148
aggggagttggcagaagttccatgtatatgggatctttacaggtcagatcttgttacagg c.*1200
. . . . . . g.36208
aaatttcaaaggtttgggagtggggagggaaaaaagctcagtcagtgaggatcattttat c.*1260
. . . . . . g.36268
cacattagactggggcagaactctgccaggatttaggaatattttcagaacagattttag c.*1320
. . . . . . g.36328
atattatttctatccatatattgaaaagaataccattgtcaatcttatttttttaaaagt c.*1380
. . . . . . g.36388
actcagtgtagaaatcgctagcccttaattcttttccagcttttcatattaatgtatgca c.*1440
. . . . . . g.36448
gagtctcaccaagctcaaagacactggttgggggtggagggtgccacagggaaagctgta c.*1500
. . . . . . g.36508
gaaggcaagaagactcgagaatcccccagagttatttttctccataaagaccatcagagt c.*1560
. . . . . . g.36568
gcttaactgagctgttggagactgtgaggcatttaggaaaaaaatagcccactcacatca c.*1620
. . . . . . g.36628
ttccttgtaagtcttaagttcattttcattttacgtggaggaaaaaaatttaaaaagcta c.*1680
. . . . . . g.36688
ttagtatttattaatgaattttactgagacatttcttagaaatatgcacttctatactag c.*1740
. . . . . . g.36748
caagctctgtctctaaaatgcaagttggccttttgcttgccacatttctgcattaaactt c.*1800
. . . . . . g.36808
ctatattagcttcaaaggcttttaaactcaatgcgaacattctacgggatgttcttagat c.*1860
. . . . . . g.36868
gcctttaaaaagggggcagatctaattttatttgaaccctcactttccaacttcaccatg c.*1920
. . . . . . g.36928
acccagtactagagattagggcacttcaaagcattgaaaaaaatctactgatacttactt c.*1980
. . . . . . g.36988
tcttagacaagtagttcttagttaaccaccaatggaactgggttcattctgaatcctgga c.*2040
. . . . . . g.37048
ggagcttcctcgtgccacccagtgtttctgggccctctgtgtgagcagccaggtgtgagc c.*2100
. . . . . . g.37108
tgttttagaagcagcgtgttgccttcatctctcccgtttcccaaaagaacaaaggataaa c.*2160
. . . . . . g.37168
ggtgacagtcacactcctgggttaaaaaaagcattccagaaccacttctctttatgggca c.*2220
. . . . . . g.37228
caacaaagaaacgaaggctgaagttcgcctacccaaaatgaaaagtaggctttacagtca c.*2280
. . . . . . g.37288
aaagtacttctgttgattgctaaataacttcattttcttgaaatagagcaactttgagtg c.*2340
. . . . . . g.37348
aaatctgcaacatggataccatgtatgtaagatactgctgtacagaagagttaaggctta c.*2400
. . . . . . g.37408
cagtgcaaatgaggcgtcagctttgggtgctaaaattaacaagtctaatattattaccat c.*2460
. . . . . . g.37468
caatcaggaagagaataataaatgtttaaacaaacacagcagtctgtataaaaataccgt c.*2520
. . . . . . g.37528
gtatcatttactctttctgcagctctatacgataggcaggagaggcttatgtggcagcac c.*2580
. . . . . . g.37588
aagccaggtggggattttgtaaagaagtgataaaacatttgtaagtaatccaagtaggtg c.*2640
. . . . . . g.37648
tattaaggcaccaaaagtaacatggcacccaacacccaaaaataaaaatatgaaatatga c.*2700
. . . . . . g.37708
gtgtgaactctgagtagagtatgaaacaccacagaaagtcttagaaatagctctggagtg c.*2760
. . . . . . g.37768
gctctcccaggacagtttccagttgctgaatagtcttttggcactgatgttctacttctt c.*2820
. . . . . . g.37828
cacattcatctaaaaaaaaaaaaaaaaaatcaaaattaaaatctgagtcagtccgcctgc c.*2880
. . . . . . g.37888
ctcggttctcattagtttaattcttaatgccttgcactttccggcaatcattcaatcaaa c.*2940
. . . . . . g.37948
agagtgaaatgaagcacattaacaaagcaggaggcgccacggaccgcctccctccacacc c.*3000
. . . . . . g.38008
gctccttccgccttcattccttgcccacaggcttgcactggaagctgaataagaatcccc c.*3060
. . . . . . g.38068
aaaactcaaacttcctagggatgccacccctttagtagctcacacctcccccctccaaga c.*3120
. . . . . . g.38128
gctaagaaacaaaggagaatgtacttttgtagcttagataagcaatgaatcagtaaagga c.*3180
. . . . . . g.38188
ctgatctacttgctccaccacccctcccttaataataacatttactgttatttcctgggc c.*3240
. . . . . . g.38248
ctaagactctatgttccagaactgtcacagctccccatgtcacactcactagcttgtgat c.*3300
. . . . . . g.38308
ctttgtcaaataactgaaatcttttaagcctctagtttcttcctttgtaaaacagagata c.*3360
. . . . . . g.38368
aaatgttgtggtttttaagtgagataatccaagtaaagcacctaacatggagtagtgaat c.*3420
. . . . . . g.38428
gaacatcggttgctactaaaagtggacatcctactgcatccttaatgccactaggcattt c.*3480
. . . . . . g.38488
ccatacaatctggggaccaaaacttcaatcatataaatgtatgaggttaattaaaaacac c.*3540
. . . . . . g.38548
tactgtaatctgcttgtatgatcacaaaccaccacaaaagaaaagatcgtgaagattaca c.*3600
. . . . . . g.38608
ctgtaaacggactctcaaatgatcaggaggtggtcacttcgcaacttgctccctccaccc c.*3660
. . . . . . g.38668
aactcaaaacaggagctcgagcctgcctgtatttgagactggagctgcctgtatgaggac c.*3720
. . . . . . g.38728
tggatcaactgctagtcacgttatatccaaatctgcattatcattgggcacattttcaca c.*3780
. . . . . . g.38788
gaattttactgaattattccttaattgtttaatggttgggaatagtttgggaattacctt c.*3840
. . . . . . g.38848
ccatcaactctgctaagaaaggaatggattctggtagcaagacaatataattctccttta c.*3900
. . . . . . g.38908
gtttttcagccagtgctaacacagtaatcaaagcagcaaatcgaacctgaaagggataaa c.*3960
. . . . . . g.38968
agagcaaagaaataaaaagtagtgttactgtatttattatcttaagagctgtactgactt c.*4020
. . . . . . g.39028
gagacaagctctaactttttaaacattagttcacatgcgtttattcacttcattatgttc c.*4080
. . . . . . g.39088
attaagctttcatcttagaataccagtttcaccatttgggagctgtttgtaatatgtgca c.*4140
. . . . . . g.39148
accttataaatagtgttttccaaactgtgtcccaggactgcaaatctttaatgtgaaatg c.*4200
. . . . . . g.39208
tctttttataatctcttcctttaaaaaaaaccaataaaataaaatgccgcatgcaaactc c.*4260
. . . . . . g.39268
aagtgtgtcaccagattttacttcattggcgctcgccagcccgccaggctggcaataaag c.*4320
. . . . . . g.39328
tgcctccagccacctctggcaggtctcctcacccacagcccctgactggtcaccactata c.*4380
. . . . . . g.39388
attgtatgaggggccaggacagtcgcttgggataaactcccatctcagcactgaataaaa c.*4440
. . . . . . g.39448
aacattctgtgtcacaatatcctagttttggggctttaaaaacgtctaggtgttcctcac c.*4500
. . . . . . g.39508
atgccttgtctataataaggaaagcaagcagtagttgggtattgttagcttttgaaacaa c.*4560
. . . . . . g.39568
aagccctactggtcttctaattttggatattttaattaaagaatatctggacagtacaaa c.*4620
. . . . . . g.39628
gtgaattattaaaaaaccatttgtaactacctagattcaatcaggatttccttgatttgt c.*4680
. . . . . . g.39688
gcaaagtaaaatattacaataaatttgatactgctacttgtataaaaacctatggtttaa c.*4740
. . . . . . g.39748
aatgtgggggttcatcataatagtctcattgttagcatatcctaataaagaatttgaact c.*4800
. . g.39768
aataaatcctattaataaaa c.*4820
(downstream sequence)
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