(used for variant description)
(last modified August 8, 2019)
This file was created to facilitate the description of sequence variants on transcript NM_032808.5 in the LINGO1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000015.9, covering LINGO1 transcript NM_032808.5.
(upstream sequence)
. . . . . g.5052
ggagagacatgcgattggtgaccgagccgagcggaccgaaggcgcgcccgag c.-1
| 02 . . . . . . g.21521
ATGCAG | GTGAGCAAGAGGATGCTGGCGGGGGGCGTGAGGAGCATGCCCAGCCCCCTCCTG c.60
M Q | V S K R M L A G G V R S M P S P L L p.20
. . . . . . g.21581
GCCTGCTGGCAGCCCATCCTCCTGCTGGTGCTGGGCTCAGTGCTGTCAGGCTCGGCCACG c.120
A C W Q P I L L L V L G S V L S G S A T p.40
. . . . . . g.21641
GGCTGCCCGCCCCGCTGCGAGTGCTCCGCCCAGGACCGCGCTGTGCTGTGCCACCGCAAG c.180
G C P P R C E C S A Q D R A V L C H R K p.60
. . . . . . g.21701
CGCTTTGTGGCAGTCCCCGAGGGCATCCCCACCGAGACGCGCCTGCTGGACCTAGGCAAG c.240
R F V A V P E G I P T E T R L L D L G K p.80
. . . . . . g.21761
AACCGCATCAAAACGCTCAACCAGGACGAGTTCGCCAGCTTCCCGCACCTGGAGGAGCTG c.300
N R I K T L N Q D E F A S F P H L E E L p.100
. . . . . . g.21821
GAGCTCAACGAGAACATCGTGAGCGCCGTGGAGCCCGGCGCCTTCAACAACCTCTTCAAC c.360
E L N E N I V S A V E P G A F N N L F N p.120
. . . . . . g.21881
CTCCGGACGCTGGGTCTCCGCAGCAACCGCCTGAAGCTCATCCCGCTAGGCGTCTTCACT c.420
L R T L G L R S N R L K L I P L G V F T p.140
. . . . . . g.21941
GGCCTCAGCAACCTGACCAAGCTGGACATCAGCGAGAACAAGATCGTTATCCTACTGGAC c.480
G L S N L T K L D I S E N K I V I L L D p.160
. . . . . . g.22001
TACATGTTTCAGGACCTGTACAACCTCAAGTCACTGGAGGTTGGCGACAATGACCTCGTC c.540
Y M F Q D L Y N L K S L E V G D N D L V p.180
. . . . . . g.22061
TACATCTCTCACCGCGCCTTCAGCGGCCTCAACAGCCTGGAGCAGCTGACGCTGGAGAAA c.600
Y I S H R A F S G L N S L E Q L T L E K p.200
. . . . . . g.22121
TGCAACCTGACCTCCATCCCCACCGAGGCGCTGTCCCACCTGCACGGCCTCATCGTCCTG c.660
C N L T S I P T E A L S H L H G L I V L p.220
. . . . . . g.22181
AGGCTCCGGCACCTCAACATCAATGCCATCCGGGACTACTCCTTCAAGAGGCTGTACCGA c.720
R L R H L N I N A I R D Y S F K R L Y R p.240
. . . . . . g.22241
CTCAAGGTCTTGGAGATCTCCCACTGGCCCTACTTGGACACCATGACACCCAACTGCCTC c.780
L K V L E I S H W P Y L D T M T P N C L p.260
. . . . . . g.22301
TACGGCCTCAACCTGACGTCCCTGTCCATCACACACTGCAATCTGACCGCTGTGCCCTAC c.840
Y G L N L T S L S I T H C N L T A V P Y p.280
. . . . . . g.22361
CTGGCCGTCCGCCACCTAGTCTATCTCCGCTTCCTCAACCTCTCCTACAACCCCATCAGC c.900
L A V R H L V Y L R F L N L S Y N P I S p.300
. . . . . . g.22421
ACCATTGAGGGCTCCATGTTGCATGAGCTGCTCCGGCTGCAGGAGATCCAGCTGGTGGGC c.960
T I E G S M L H E L L R L Q E I Q L V G p.320
. . . . . . g.22481
GGGCAGCTGGCCGTGGTGGAGCCCTATGCCTTCCGCGGCCTCAACTACCTGCGCGTGCTC c.1020
G Q L A V V E P Y A F R G L N Y L R V L p.340
. . . . . . g.22541
AATGTCTCTGGCAACCAGCTGACCACACTGGAGGAATCAGTCTTCCACTCGGTGGGCAAC c.1080
N V S G N Q L T T L E E S V F H S V G N p.360
. . . . . . g.22601
CTGGAGACACTCATCCTGGACTCCAACCCGCTGGCCTGCGACTGTCGGCTCCTGTGGGTG c.1140
L E T L I L D S N P L A C D C R L L W V p.380
. . . . . . g.22661
TTCCGGCGCCGCTGGCGGCTCAACTTCAACCGGCAGCAGCCCACGTGCGCCACGCCCGAG c.1200
F R R R W R L N F N R Q Q P T C A T P E p.400
. . . . . . g.22721
TTTGTCCAGGGCAAGGAGTTCAAGGACTTCCCTGATGTGCTACTGCCCAACTACTTCACC c.1260
F V Q G K E F K D F P D V L L P N Y F T p.420
. . . . . . g.22781
TGCCGCCGCGCCCGCATCCGGGACCGCAAGGCCCAGCAGGTGTTTGTGGACGAGGGCCAC c.1320
C R R A R I R D R K A Q Q V F V D E G H p.440
. . . . . . g.22841
ACGGTGCAGTTTGTGTGCCGGGCCGATGGCGACCCGCCGCCCGCCATCCTCTGGCTCTCA c.1380
T V Q F V C R A D G D P P P A I L W L S p.460
. . . . . . g.22901
CCCCGAAAGCACCTGGTCTCAGCCAAGAGCAATGGGCGGCTCACAGTCTTCCCTGATGGC c.1440
P R K H L V S A K S N G R L T V F P D G p.480
. . . . . . g.22961
ACGCTGGAGGTGCGCTACGCCCAGGTACAGGACAACGGCACGTACCTGTGCATCGCGGCC c.1500
T L E V R Y A Q V Q D N G T Y L C I A A p.500
. . . . . . g.23021
AACGCGGGCGGCAACGACTCCATGCCCGCCCACCTGCATGTGCGCAGCTACTCGCCCGAC c.1560
N A G G N D S M P A H L H V R S Y S P D p.520
. . . . . . g.23081
TGGCCCCATCAGCCCAACAAGACCTTCGCTTTCATCTCCAACCAGCCGGGCGAGGGAGAG c.1620
W P H Q P N K T F A F I S N Q P G E G E p.540
. . . . . . g.23141
GCCAACAGCACCCGCGCCACTGTGCCTTTCCCCTTCGACATCAAGACCCTCATCATCGCC c.1680
A N S T R A T V P F P F D I K T L I I A p.560
. . . . . . g.23201
ACCACCATGGGCTTCATCTCTTTCCTGGGCGTCGTCCTCTTCTGCCTGGTGCTGCTGTTT c.1740
T T M G F I S F L G V V L F C L V L L F p.580
. . . . . . g.23261
CTCTGGAGCCGGGGCAAGGGCAACACAAAGCACAACATCGAGATCGAGTATGTGCCCCGA c.1800
L W S R G K G N T K H N I E I E Y V P R p.600
. . . . . . g.23321
AAGTCGGACGCAGGCATCAGCTCCGCCGACGCGCCCCGCAAGTTCAACATGAAGATGATA c.1860
K S D A G I S S A D A P R K F N M K M I p.620
g.23324
TGA c.1863
X p.620
. . . . . . g.23384
ggccggggcggggggcagggacccccgggcggccgggcaggggaaggggcctggccgcca c.*60
. . . . . . g.23444
cctgctcactctccagtccttcccacctcctccctacccttctacacacgttctctttct c.*120
. . . . . . g.23504
ccctcccgcctccgtcccctgctgccccccgccagccctcaccacctgccctccttctac c.*180
. . . . . . g.23564
caggacctcagaagcccagacctggggaccccacctacacaggggcattgacagactgga c.*240
. . . . . . g.23624
gttgaaagccgacgaaccgacacgcggcagagtcaataattcaataaaaaagttacgaac c.*300
. . . . . . g.23684
tttctctgtaacttgggtttcaataattatggatttttatgaaaacttgaaataataaaa c.*360
. . . . . . g.23744
agagaaaaaaactatttcctatagctagtcggaatgcaaacttttgacgtcctgattgct c.*420
. . . . . . g.23804
ccagggccctcttccaactcagtttcttgtttttctcttcctcctcctcctcttcttcct c.*480
. . . . . . g.23864
cctttctcttctcttccccagtggggagggatcactcaggaaaacaggaaaggaggttcc c.*540
. . . . . . g.23924
agccccacccacctgcccaccccgccccaggcaccatcaggagcaggctagggggcaggc c.*600
. . . . . . g.23984
ctgggcccagctccgggctggctttttgcagggcgcaggtggaggggacaggtctgccga c.*660
. . . . . . g.24044
tgggggtgggagcctgtctgctgggctgccaggcggcaccactgcaaggggtgggagcct c.*720
. . . . . . g.24104
ggcttgggtgtggctgagactctggacagaggctggggtcctcctgggggacagcacagt c.*780
. . . . . . g.24164
cagtggagagagccaggggctggaggtggggcccaccccagcctctggtcccagctctgc c.*840
. . . . . . g.24224
tgctcacttgctgtgtggcctcaagcaggtcactggcctctctgggcctcagtctccaca c.*900
. . . . . . g.24284
tctgtacaaatgggaacattaccccctgccctgcctacctcacagggctgttgtgaggaa c.*960
. . . . . g.24341
ttgatgagatgatgtatgtgaaacactttgtaacctgtaaagcgctgtgcacacgtg c.*1017
(downstream sequence)
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