(used for variant description)
(last modified April 11, 2017)
This file was created to facilitate the description of sequence variants on transcript NM_018372.3 in the LRIF1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000001.10, covering LRIF1 transcript NM_018372.3.
(upstream sequence)
. g.5275
ctcagcgtagggctgt c.-241
. . . . . . g.5335
gagggcgcagtccaccgccaggagccttccggtttctgcgcggtgcgcgacctcgtcccg c.-181
. . . . . . g.5395
aagcctggggatacaccctctcgagagcccgctgtcgccctccgttaaggtcgaacccct c.-121
. . . . . . g.5455
cacagttgctgtgggcaactccagcccaacattccctcgctctggttctcgccccattgg c.-61
. . . . . . g.5515
gaaactcggccccacgcttcccacttttctggatgaggtgtcccctttctccccactaaa c.-1
. . . . . . g.5575
ATGTCAAATAACCTACGGAGGGTCTTCCTGAAACCCGCAGAGGAAAATTCAGGCAACGCC c.60
M S N N L R R V F L K P A E E N S G N A p.20
| 02 . . . . . g.16440
TCGCGTTG | TGTTTCAGGCTGCATGTACCAAGTAGTTCAGACGATTGGCTCGGATGGAAAA c.120
S R C | V S G C M Y Q V V Q T I G S D G K p.40
. . . . . . g.16500
AATCTTCTGCAATTACTTCCAATTCCTAAGTCTTCTGGAAATCTTATACCACTAGTTCAA c.180
N L L Q L L P I P K S S G N L I P L V Q p.60
. . . . . . g.16560
TCTTCAGTCATGTCTGATGCTTTGAAAGGGAATACAGGAAAACCAGTTCAAGTTACTTTT c.240
S S V M S D A L K G N T G K P V Q V T F p.80
. . . . . . g.16620
CAGACTCAGATTTCCAGCTCTTCCACAAGTGCATCAGTTCAATTGCCCATTTTTCAGCCA c.300
Q T Q I S S S S T S A S V Q L P I F Q P p.100
. . . . . . g.16680
GCCAGTTCTTCAAACTATTTTCTTACAAGAACAGTAGATACATCAGAAAAAGGTAGAGTT c.360
A S S S N Y F L T R T V D T S E K G R V p.120
. . . . . . g.16740
ACTTCTGTGGGAACTGGAAATTTTTCTTCATCAGTTTCTAAAGTTCAGAGTCATGGTGTG c.420
T S V G T G N F S S S V S K V Q S H G V p.140
. . . . . . g.16800
AAAATTGATGGACTCACCATGCAAACATTTGCTGTTCCTCCCTCAACACAAAAAGACTCA c.480
K I D G L T M Q T F A V P P S T Q K D S p.160
. . . . . . g.16860
TCTTTTATTGTAGTTAATACCCAGAGTCTTCCAGTGACTGTGAAGTCTCCAGTTTTGCCT c.540
S F I V V N T Q S L P V T V K S P V L P p.180
. . . . . . g.16920
TCTGGGCATCATTTACAGATTCCAGCCCATGCTGAAGTGAAATCTGTACCAGCGTCATCA c.600
S G H H L Q I P A H A E V K S V P A S S p.200
. . . . . . g.16980
TTGCCTCCTTCAGTGCAGCAAAAGATACTTGCAACTGCCACCACCAGTACCTCAGGAATG c.660
L P P S V Q Q K I L A T A T T S T S G M p.220
. . . . . . g.17040
GTTGAGGCCTCCCAAATGCCAACCGTTATTTATGTATCTCCTGTAAATACAGTGAAAAAT c.720
V E A S Q M P T V I Y V S P V N T V K N p.240
. . . . . . g.17100
GTAGTTACCAAGAACTTTCAAAACATTTACCCAAAACCTGTTACAGAAATAGCAAAGCCA c.780
V V T K N F Q N I Y P K P V T E I A K P p.260
. . . . . . g.17160
GTAATACTAAATACCACACAAATTCCAAAGAATGTTGCTACAGAGACACAATTGAAAGGT c.840
V I L N T T Q I P K N V A T E T Q L K G p.280
. . . . . . g.17220
GGTCAGCATTCTCAAGCTGCTCCAGTGAAATGGATTTTCCAAGATAATCTACAGCCTTTT c.900
G Q H S Q A A P V K W I F Q D N L Q P F p.300
. . . . . . g.17280
ACGCCATCTCTTGTTCCTGTTAAGTCTTCAAATAATGTGGCTTCAAAGATTTTAAAAACT c.960
T P S L V P V K S S N N V A S K I L K T p.320
. . . . . . g.17340
TTTGTAGATAGGAAAAATTTGGGAGATAATACTATAAATATGCCACCATTGAGTACCATC c.1020
F V D R K N L G D N T I N M P P L S T I p.340
. . . . . . g.17400
GATCCTAGTGGGACGCGATCCAAAAATATGCCTATTAAAGATAATGCTTTGGTTATGTTT c.1080
D P S G T R S K N M P I K D N A L V M F p.360
. . . . . . g.17460
AATGGGAAAGTCTATCTGTTGGCTAAAAAGGGGACAGATGTTCTGCCATCACAAATTGAC c.1140
N G K V Y L L A K K G T D V L P S Q I D p.380
. . . . . . g.17520
CAACAGAATTCTGTTTCTCCTGATACTCCAGTAAGAAAAGACACGTTACAGACAGTGAGT c.1200
Q Q N S V S P D T P V R K D T L Q T V S p.400
. . . . . . g.17580
TCAAGTCCAGTCACAGAAATATCCAGAGAGGTTGTAAATATTGTTTTGGCTAAAAGTAAA c.1260
S S P V T E I S R E V V N I V L A K S K p.420
. . . . . . g.17640
TCTTCCCAGATGGAGACAAAATCACTTTCCAATACCCAGCTTGCTTCCATGGCCAATCTA c.1320
S S Q M E T K S L S N T Q L A S M A N L p.440
. . . . . . g.17700
AGGGCAGAGAAGAATAAAGTGGAGAAACCATCTCCTTCTACCACAAATCCACATATGAAC c.1380
R A E K N K V E K P S P S T T N P H M N p.460
. . . . . . g.17760
CAATCCAGTAACTACTTAAAACAGAGTAAGACTTTATTCACAAATCCAATCTTTCCAGTT c.1440
Q S S N Y L K Q S K T L F T N P I F P V p.480
. . . . . . g.17820
GGATTTAGTACAGGACACAATGCCCCCAGAAAAGTAACAGCCGTCATTTATGCTAGAAAA c.1500
G F S T G H N A P R K V T A V I Y A R K p.500
. . . . . . g.17880
GGAAGTGTCCTCCAGAGCATAGAGAAAATAAGTTCCTCTGTTGATGCAACAACTGTTACT c.1560
G S V L Q S I E K I S S S V D A T T V T p.520
. . . | 03 . . . g.19104
TCACAACAGTGTGTTTTCAGAGACCAAGAACCAAAG | ATCCATAATGAGATGGCATCAACA c.1620
S Q Q C V F R D Q E P K | I H N E M A S T p.540
. . . . . . g.19164
TCAGATAAAGGTGCCCAAGGAAGAAATGACAAGAAAGATTCTCAAGGAAGAAGTAATAAG c.1680
S D K G A Q G R N D K K D S Q G R S N K p.560
. . . . . . g.19224
GCATTACATCTGAAGAGTGATGCTGAATTTAAAAAGATATTTGGCCTTACTAAGGATTTG c.1740
A L H L K S D A E F K K I F G L T K D L p.580
. . . . . . g.19284
AGAGTGTGCCTTACTCGAATTCCTGACCATTTGACCTCTGGAGAAGGTTTCGATTCCTTT c.1800
R V C L T R I P D H L T S G E G F D S F p.600
. . . . . . g.19344
AGCAGTTTGGTAAAGAGTGGTACTTACAAAGAGACAGAGTTTATGGTGAAGGAAGGAGAG c.1860
S S L V K S G T Y K E T E F M V K E G E p.620
| 04 . . . . . g.20855
AGAAAACAG | CAGAATTTTGATAAGAAAAGAAAAGCAAAAACTAATAAGAAGATGGATCAC c.1920
R K Q | Q N F D K K R K A K T N K K M D H p.640
. . . . . . g.20915
ATAAAGAAGAGAAAAACAGAGAATGCTTATAACGCAATCATAAATGGGGAAGCTAATGTC c.1980
I K K R K T E N A Y N A I I N G E A N V p.660
. . . . . . g.20975
ACCGGTTCCCAACTCCTAAGCAGTATTTTACCAACTTCAGATGTGTCACAACATAACATT c.2040
T G S Q L L S S I L P T S D V S Q H N I p.680
. . . . . . g.21035
CTCACGAGTCACAGCAAAACCAGACAAGAAAAGAGAACTGAGATGGAATACTATACCCAT c.2100
L T S H S K T R Q E K R T E M E Y Y T H p.700
. . . . . . g.21095
GAGAAGCAAGAGAAAGGCACTTTGAATTCAAATGCAGCTTATGAACAAAGTCATTTCTTC c.2160
E K Q E K G T L N S N A A Y E Q S H F F p.720
. . . . . . g.21155
AATAAAAATTATACCGAAGATATTTTCCCAGTGACACCACCGGAGTTAGAAGAAACCATT c.2220
N K N Y T E D I F P V T P P E L E E T I p.740
. . . . . . g.21215
CGAGATGAAAAAATAAGAAGACTTAAGCAGGTGCTGAGAGAGAAAGAAGCAGCTCTTGAA c.2280
R D E K I R R L K Q V L R E K E A A L E p.760
. . . g.21245
GAAATGCGTAAGAAGATGCACCAAAAATAA c.2310
E M R K K M H Q K X p.769
. . . . . . g.21305
aatctcctgtaaagacttcagtgaaatagctgttttttaaaatatacttcagcattaata c.*60
. . . . . . g.21365
agttaattgtaggtgtgttctgaaagtgtctttgaatatgaagcttgttttttcatcagt c.*120
. . . . . . g.21425
cgattgtacaactttaaggaatacagaaaaggttgattcacatatgacttgtgaataatt c.*180
. . . . . . g.21485
tacatggggtatctatacctttgtcttagatacctttttttggaaggataaattttatat c.*240
. . . . . . g.21545
ttttctattattttaactagaattctccaagtttgaatatttgggcagggtttttgttat c.*300
. . . . . . g.21605
tgtttgtatctttacctaaattgctcaggcattattccagcagtagatagtgactgtgta c.*360
. . . . . . g.21665
ttactgaaattttacaattcaagagaggaaatcagctccaaacttagcttttccagtgga c.*420
. . . . . . g.21725
tttgtatatgtacttgctttatctctttacccttaaaatgatgataccttgtattcacca c.*480
. . . . . . g.21785
ttgttttttttaatgtcgtgaaataatatgtattatggcaacattatttaaacattcaaa c.*540
. . . . . . g.21845
catttctcaagaatgagcaacatttgtaactttacaatgtaattttatataatccaaagg c.*600
. . . . . . g.21905
tattttagaattcaggccatttgatgttttgtttgcttatagtgatgtgttcccaggcaa c.*660
. . . . . . g.21965
atgctgctttttttttttttgggactatgtacatacgttactgagattgtgtaaaaagta c.*720
. . . . g.22014
gatcctgaacagttatcacatttaatatttcttaaactgtaaaagtgta c.*769
(downstream sequence)
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