lysosomal trafficking regulator (LYST) - coding DNA reference sequence

(used for variant description)

(last modified July 18, 2019)


This file was created to facilitate the description of sequence variants on transcript NM_000081.3 in the LYST gene based on a coding DNA reference sequence following the HGVS recommendations.

The sequence was taken from NG_007397.1, covering LYST transcript NM_000081.3.


Please note that introns are available by clicking on the exon numbers above the sequence.
 (upstream sequence)
                                                                    g.21715
                                                           gt       c.-181

 .         .         .         .         .         .                g.21775
 gcgcggcggcggcggcagcggcgtcggctcggggttctccgggagagggggagtgcgcgg       c.-121

 .         .         .   | 02     .         .         .             g.55010
 cggccgcagctgccacaaaccag | gtgaagctttgttctaagaatatttgtttcatctagt    c.-61

 .         .         .         .         .         .   | 03         g.58223
 ttatgagtccaaatgatatagactgtaaatgtcacagcagtggtgaaagactg | ctcggtc    c.-1

          .         .         .         .         .         .       g.58283
 ATGAGCACCGACAGTAACTCACTGGCACGTGAATTTCTGACCGATGTCAACCGGCTTTGC       c.60
 M  S  T  D  S  N  S  L  A  R  E  F  L  T  D  V  N  R  L  C         p.20

          .         .         .         .         .         .       g.58343
 AATGCAGTGGTCCAGAGGGTGGAGGCCAGGGAGGAAGAAGAGGAGGAGACGCACATGGCA       c.120
 N  A  V  V  Q  R  V  E  A  R  E  E  E  E  E  E  T  H  M  A         p.40

          .         .         .         .         .         .       g.58403
 ACCCTTGGACAGTACCTTGTCCATGGTCGAGGATTTCTATTACTTACCAAGCTAAATTCT       c.180
 T  L  G  Q  Y  L  V  H  G  R  G  F  L  L  L  T  K  L  N  S         p.60

          .   | 04     .         .         .         .         .    g.75627
 ATAATTGATCAG | GCATTGACATGTAGAGAAGAACTCCTGACTCTTCTTCTGTCTCTCCTT    c.240
 I  I  D  Q   | A  L  T  C  R  E  E  L  L  T  L  L  L  S  L  L      p.80

          .         .         .         .    | 05    .         .    g.78123
 CCACTGGTATGGAAGATACCTGTCCAAGAAGAAAAGGCAACAG | ATTTTAACCTACCGCTC    c.300
 P  L  V  W  K  I  P  V  Q  E  E  K  A  T  D |   F  N  L  P  L      p.100

          .         .         .         .         .         .       g.78183
 TCAGCAGATATAATCCTGACCAAAGAAAAGAACTCAAGTTCACAAAGATCCACTCAGGAA       c.360
 S  A  D  I  I  L  T  K  E  K  N  S  S  S  Q  R  S  T  Q  E         p.120

          .         .         .         .         .         .       g.78243
 AAATTACATTTAGAAGGAAGTGCCCTGTCTAGTCAGGTTTCTGCAAAAGTAAATGTTTTT       c.420
 K  L  H  L  E  G  S  A  L  S  S  Q  V  S  A  K  V  N  V  F         p.140

          .         .         .         .         .         .       g.78303
 CGAAAAAGCAGACGACAGCGTAAAATTACCCATCGCTATTCTGTAAGAGATGCAAGAAAG       c.480
 R  K  S  R  R  Q  R  K  I  T  H  R  Y  S  V  R  D  A  R  K         p.160

          .         .         .         .         .         .       g.78363
 ACACAGCTCTCCACCTCAGATTCAGAAGCCAATTCAGATGAAAAAGGCATAGCAATGAAT       c.540
 T  Q  L  S  T  S  D  S  E  A  N  S  D  E  K  G  I  A  M  N         p.180

          .         .         .         .         .         .       g.78423
 AAGCATAGAAGGCCCCATCTGCTGCATCATTTTTTAACATCGTTTCCTAAACAAGACCAC       c.600
 K  H  R  R  P  H  L  L  H  H  F  L  T  S  F  P  K  Q  D  H         p.200

          .         .         .         .         .         .       g.78483
 CCCAAAGCTAAACTTGACCGCTTAGCAACCAAAGAACAGACTCCTCCAGATGCTATGGCT       c.660
 P  K  A  K  L  D  R  L  A  T  K  E  Q  T  P  P  D  A  M  A         p.220

          .         .         .         .         .         .       g.78543
 TTGGAAAATTCCAGAGAGATTATTCCAAGACAGGGGTCAAACACTGACATTTTAAGTGAG       c.720
 L  E  N  S  R  E  I  I  P  R  Q  G  S  N  T  D  I  L  S  E         p.240

          .         .         .         .         .         .       g.78603
 CCAGCTGCCTTGTCTGTTATCAGTAACATGAACAATTCTCCATTTGACTTATGTCATGTT       c.780
 P  A  A  L  S  V  I  S  N  M  N  N  S  P  F  D  L  C  H  V         p.260

          .         .         .         .         .         .       g.78663
 TTGTTATCTTTATTAGAAAAAGTTTGTAAGTTTGACGTTACCTTGAATCATAATTCTCCT       c.840
 L  L  S  L  L  E  K  V  C  K  F  D  V  T  L  N  H  N  S  P         p.280

          .         .         .         .         .         .       g.78723
 TTAGCAGCCAGTGTAGTGCCCACACTAACTGAATTCCTAGCAGGCTTTGGGGACTGCTGC       c.900
 L  A  A  S  V  V  P  T  L  T  E  F  L  A  G  F  G  D  C  C         p.300

          .         .         .         .         .         .       g.78783
 AGTCTGAGCGACAACTTGGAGAGTCGAGTAGTTTCTGCAGGTTGGACCGAAGAACCGGTG       c.960
 S  L  S  D  N  L  E  S  R  V  V  S  A  G  W  T  E  E  P  V         p.320

          .         .         .         .         .         .       g.78843
 GCTTTGATTCAAAGGATGCTCTTTCGAACAGTGTTGCATCTTCTGTCAGTAGATGTTAGT       c.1020
 A  L  I  Q  R  M  L  F  R  T  V  L  H  L  L  S  V  D  V  S         p.340

          .         .         .         .         .         .       g.78903
 ACTGCAGAGATGATGCCAGAAAATCTTAGGAAAAATTTAACTGAATTGCTTAGAGCAGCT       c.1080
 T  A  E  M  M  P  E  N  L  R  K  N  L  T  E  L  L  R  A  A         p.360

          .         .         .         .         .         .       g.78963
 TTAAAAATTAGAATATGCCTAGAAAAGCAGCCTGACCCTTTTGCACCAAGACAAAAGAAA       c.1140
 L  K  I  R  I  C  L  E  K  Q  P  D  P  F  A  P  R  Q  K  K         p.380

          .         .         .         .         .         .       g.79023
 ACACTGCAGGAGGTTCAGGAAGATTTTGTGTTTTCAAAGTATCGTCATAGAGCCCTTCTT       c.1200
 T  L  Q  E  V  Q  E  D  F  V  F  S  K  Y  R  H  R  A  L  L         p.400

          .         .         .         .         .         .       g.79083
 TTACCTGAGCTTTTGGAAGGAGTTCTTCAGATTCTGATCTGTTGTCTTCAAAGTGCAGCT       c.1260
 L  P  E  L  L  E  G  V  L  Q  I  L  I  C  C  L  Q  S  A  A         p.420

          .         .         .         .         .         .       g.79143
 TCAAATCCCTTCTACTTCAGTCAAGCCATGGATTTGGTTCAAGAATTCATTCAGCATCAT       c.1320
 S  N  P  F  Y  F  S  Q  A  M  D  L  V  Q  E  F  I  Q  H  H         p.440

          .         .         .         .         .         .       g.79203
 GGATTTAATTTATTTGAAACAGCAGTTCTTCAAATGGAATGGCTGGTTTTAAGAGATGGA       c.1380
 G  F  N  L  F  E  T  A  V  L  Q  M  E  W  L  V  L  R  D  G         p.460

          .         .         .         .         .         .       g.79263
 GTTCCTCCCGAGGCCTCAGAGCATTTGAAAGCCCTAATAAATAGTGTGATGAAAATAATG       c.1440
 V  P  P  E  A  S  E  H  L  K  A  L  I  N  S  V  M  K  I  M         p.480

          .         .         .         .         .         .       g.79323
 AGCACTGTCAAAAAAGTGAAATCAGAGCAACTTCATCATTCGATGTGTACAAGAAAAAGG       c.1500
 S  T  V  K  K  V  K  S  E  Q  L  H  H  S  M  C  T  R  K  R         p.500

          .         .         .         .         .         .       g.79383
 CACAGACGATGTGAATATTCTCATTTTATGCATCATCACCGAGATCTCTCAGGTCTTCTG       c.1560
 H  R  R  C  E  Y  S  H  F  M  H  H  H  R  D  L  S  G  L  L         p.520

          .         .         .         .         .         .       g.79443
 GTTTCGGCTTTTAAAAACCAGGTTTCCAAAAACCCATTTGAAGAGACTGCAGATGGAGAT       c.1620
 V  S  A  F  K  N  Q  V  S  K  N  P  F  E  E  T  A  D  G  D         p.540

          .         .         .         .         .         .       g.79503
 GTTTATTATCCTGAGCGGTGCTGTTGCATTGCAGTGTGTGCCCATCAGTGCTTGCGCTTA       c.1680
 V  Y  Y  P  E  R  C  C  C  I  A  V  C  A  H  Q  C  L  R  L         p.560

          .         .         .         .         .         .       g.79563
 CTACAGCAGGCTTCCTTGAGCAGCACTTGTGTCCAGATCCTATCGGGTGTTCATAACATT       c.1740
 L  Q  Q  A  S  L  S  S  T  C  V  Q  I  L  S  G  V  H  N  I         p.580

          .         .         .         .         .         .       g.79623
 GGAATATGCTGTTGTATGGATCCCAAATCTGTAATCATTCCTTTGCTCCATGCTTTTAAA       c.1800
 G  I  C  C  C  M  D  P  K  S  V  I  I  P  L  L  H  A  F  K         p.600

          .         .         .         .         .         .       g.79683
 TTGCCAGCACTGAAAAATTTTCAGCAGCATATATTGAATATCCTTAACAAACTTATTTTG       c.1860
 L  P  A  L  K  N  F  Q  Q  H  I  L  N  I  L  N  K  L  I  L         p.620

          .         .         .         .         .         .       g.79743
 GATCAGTTAGGAGGAGCAGAGATATCACCAAAAATTAAAAAAGCAGCTTGTAATATTTGT       c.1920
 D  Q  L  G  G  A  E  I  S  P  K  I  K  K  A  A  C  N  I  C         p.640

          .         .         .         .         .         .       g.79803
 ACTGTTGACTCTGACCAACTAGCCCAATTAGAAGAGACACTGCAGGGAAACTTATGTGAT       c.1980
 T  V  D  S  D  Q  L  A  Q  L  E  E  T  L  Q  G  N  L  C  D         p.660

          .         .         .         .         .         .       g.79863
 GCTGAACTCTCCTCAAGTTTATCCAGTCCTTCTTACAGATTTCAAGGGATCCTGCCCAGC       c.2040
 A  E  L  S  S  S  L  S  S  P  S  Y  R  F  Q  G  I  L  P  S         p.680

          .         .         .         .         .         .       g.79923
 AGTGGATCTGAAGATTTGTTGTGGAAATGGGATGCTTTAAAGGCTTATCAGAACTTTGTT       c.2100
 S  G  S  E  D  L  L  W  K  W  D  A  L  K  A  Y  Q  N  F  V         p.700

          .         .         .         .         .         .       g.79983
 TTTGAAGAAGACAGATTACATAGTATACAGATTGCAAATCACATTTGCAATTTAATCCAG       c.2160
 F  E  E  D  R  L  H  S  I  Q  I  A  N  H  I  C  N  L  I  Q         p.720

          .         .         .         .         .         .       g.80043
 AAAGGCAATATAGTTGTTCAGTGGAAATTATATAATTACATATTTAATCCTGTGCTCCAA       c.2220
 K  G  N  I  V  V  Q  W  K  L  Y  N  Y  I  F  N  P  V  L  Q         p.740

          .         .         .         .         .         .       g.80103
 AGAGGAGTTGAATTAGCACATCATTGTCAACACCTAAGCGTTACTTCAGCTCAAAGTCAT       c.2280
 R  G  V  E  L  A  H  H  C  Q  H  L  S  V  T  S  A  Q  S  H         p.760

          .         .         .         .         .         .       g.80163
 GTATGTAGCCATCATAACCAGTGCTTGCCTCAGGACGTGCTTCAGATTTATGTAAAAACT       c.2340
 V  C  S  H  H  N  Q  C  L  P  Q  D  V  L  Q  I  Y  V  K  T         p.780

          .         .    | 06    .         .         .         .    g.81905
 CTGCCTATCCTGCTTAAATCCAG | GGTAATAAGAGATTTGTTTTTGAGTTGTAATGGAGTA    c.2400
 L  P  I  L  L  K  S  R  |  V  I  R  D  L  F  L  S  C  N  G  V      p.800

          .         .         .         .         .         .       g.81965
 AGTCAAATAATCGAATTAAATTGCTTAAATGGTATTCGAAGTCATTCTCTAAAAGCATTT       c.2460
 S  Q  I  I  E  L  N  C  L  N  G  I  R  S  H  S  L  K  A  F         p.820

          .         .         .         .         .         .       g.82025
 GAAACTCTGATAATCAGCCTAGGGGAGCAACAGAAAGATGCCTCAGTTCCAGATATTGAT       c.2520
 E  T  L  I  I  S  L  G  E  Q  Q  K  D  A  S  V  P  D  I  D         p.840

          .         .         .         .         .         .       g.82085
 GGGATAGACATTGAACAGAAGGAGTTGTCCTCTGTACATGTGGGTACTTCTTTTCATCAT       c.2580
 G  I  D  I  E  Q  K  E  L  S  S  V  H  V  G  T  S  F  H  H         p.860

          .         .         .         .         .         .       g.82145
 CAGCAAGCTTATTCAGATTCTCCTCAGAGTCTCAGCAAATTTTATGCTGGCCTCAAAGAA       c.2640
 Q  Q  A  Y  S  D  S  P  Q  S  L  S  K  F  Y  A  G  L  K  E         p.880

          .         .         .         .         .         .       g.82205
 GCTTATCCAAAGAGACGGAAGACTGTTAACCAAGATGTTCATATCAACACAATAAACCTA       c.2700
 A  Y  P  K  R  R  K  T  V  N  Q  D  V  H  I  N  T  I  N  L         p.900

          .         .         .         .         .         .       g.82265
 TTCCTCTGTGTGGCTTTTTTATGCGTAAGTAAAGAAGCAGAGTCTGACAGGGAGTCGGCC       c.2760
 F  L  C  V  A  F  L  C  V  S  K  E  A  E  S  D  R  E  S  A         p.920

          .         .         .         .         .         .       g.82325
 AATGACTCAGAAGATACTTCTGGCTATGACAGCACAGCCAGCGAGCCTTTAAGTCATATG       c.2820
 N  D  S  E  D  T  S  G  Y  D  S  T  A  S  E  P  L  S  H  M         p.940

          .         .         .         .         .         .       g.82385
 CTGCCATGTATATCTCTCGAGAGCCTTGTCTTGCCTTCTCCTGAACATATGCACCAAGCA       c.2880
 L  P  C  I  S  L  E  S  L  V  L  P  S  P  E  H  M  H  Q  A         p.960

          .         .         .         .         .         .       g.82445
 GCAGACATTTGGTCTATGTGTCGTTGGATCTACATGTTGAGTTCAGTGTTCCAGAAACAG       c.2940
 A  D  I  W  S  M  C  R  W  I  Y  M  L  S  S  V  F  Q  K  Q         p.980

          .         .         .         .         .         .       g.82505
 TTTTATAGGCTTGGTGGTTTCCGAGTATGCCATAAGTTAATATTTATGATAATACAGAAA       c.3000
 F  Y  R  L  G  G  F  R  V  C  H  K  L  I  F  M  I  I  Q  K         p.1000

          .         .         .         .         .         .       g.82565
 CTGTTCAGAAGTCACAAAGAGGAGCAAGGAAAAAAGGAGGGAGATACAAGTGTAAATGAA       c.3060
 L  F  R  S  H  K  E  E  Q  G  K  K  E  G  D  T  S  V  N  E         p.1020

          .         .         .         .         .         .       g.82625
 AACCAGGATTTAAACAGAATTTCTCAACCTAAGAGAACTATGAAGGAAGATTTATTATCT       c.3120
 N  Q  D  L  N  R  I  S  Q  P  K  R  T  M  K  E  D  L  L  S         p.1040

          .         .         .         .         .         .       g.82685
 TTGGCTATAAAAAGTGACCCCATACCATCAGAACTAGGTAGTCTAAAAAAGAGTGCTGAC       c.3180
 L  A  I  K  S  D  P  I  P  S  E  L  G  S  L  K  K  S  A  D         p.1060

          .         .         .         .         .         .       g.82745
 AGTTTAGGTAAATTAGAGTTACAGCATATTTCTTCCATAAATGTGGAAGAAGTTTCAGCT       c.3240
 S  L  G  K  L  E  L  Q  H  I  S  S  I  N  V  E  E  V  S  A         p.1080

          .         .         .         .         .         .       g.82805
 ACTGAAGCCGCTCCCGAGGAAGCAAAGCTATTTACAAGTCAAGAAAGTGAGACCTCACTT       c.3300
 T  E  A  A  P  E  E  A  K  L  F  T  S  Q  E  S  E  T  S  L         p.1100

          .         .         .         .         .         .       g.82865
 CAAAGTATACGACTTTTGGAAGCCCTTCTGGCCATTTGTCTTCATGGTGCCAGAACTAGT       c.3360
 Q  S  I  R  L  L  E  A  L  L  A  I  C  L  H  G  A  R  T  S         p.1120

          .         .         .    | 07    .         .         .    g.84002
 CAACAGAAGATGGAATTGGAGTTACCTAATCAG | AACTTGTCTGTGGAAAGTATATTATTT    c.3420
 Q  Q  K  M  E  L  E  L  P  N  Q   | N  L  S  V  E  S  I  L  F      p.1140

          .         .         .         .         .         .       g.84062
 GAAATGAGGGACCATCTTTCCCAGTCAAAGGTGATTGAAACACAACTAGCAAAGCCTTTA       c.3480
 E  M  R  D  H  L  S  Q  S  K  V  I  E  T  Q  L  A  K  P  L         p.1160

          .         .         .         .         .         .       g.84122
 TTTGATGCCCTGCTTCGAGTTGCCCTCGGGAATTATTCAGCAGATTTTGAACATAATGAT       c.3540
 F  D  A  L  L  R  V  A  L  G  N  Y  S  A  D  F  E  H  N  D         p.1180

          .      | 08  .         .         .         .         .    g.85621
 GCTATGACTGAGAAG | AGTCATCAATCTGCAGAAGAATTGTCATCCCAGCCTGGTGATTTT    c.3600
 A  M  T  E  K   | S  H  Q  S  A  E  E  L  S  S  Q  P  G  D  F      p.1200

          .         .         .         .         .         .       g.85681
 TCAGAAGAAGCTGAGGATTCTCAGTGTTGTAGTTTTAAACTTTTAGTTGAAGAAGAAGGT       c.3660
 S  E  E  A  E  D  S  Q  C  C  S  F  K  L  L  V  E  E  E  G         p.1220

          .         .         .         .         .   | 09     .    g.87551
 TACGAAGCAGATAGTGAAAGCAATCCTGAAGATGGCGAAACCCAGGATGATG | GGGTAGAC    c.3720
 Y  E  A  D  S  E  S  N  P  E  D  G  E  T  Q  D  D  G |   V  D      p.1240

          .         .         .         .         .         .       g.87611
 TTAAAGTCTGAAACAGAAGGTTTCAGTGCATCAAGCAGTCCAAATGACTTACTCGAAAAC       c.3780
 L  K  S  E  T  E  G  F  S  A  S  S  S  P  N  D  L  L  E  N         p.1260

          .         .         .         .         .         .       g.87671
 CTCACTCAAGGGGAAATAATTTATCCTGAGATTTGTATGCTGGAATTAAATTTGCTTTCT       c.3840
 L  T  Q  G  E  I  I  Y  P  E  I  C  M  L  E  L  N  L  L  S         p.1280

          .         .         .         .         .         .       g.87731
 GCTAGTAAAGCCAAACTTGATGTGCTTGCCCATGTATTTGAGAGTTTTTTGAAAATTATT       c.3900
 A  S  K  A  K  L  D  V  L  A  H  V  F  E  S  F  L  K  I  I         p.1300

          .         .         .          | 10        .         .    g.88275
 AGGCAGAAAGAAAAGAATGTTTTTCTGCTCATGCAACAG | GGAACTGTGAAAAATCTTTTA    c.3960
 R  Q  K  E  K  N  V  F  L  L  M  Q  Q   | G  T  V  K  N  L  L      p.1320

          .         .         .         .       | 11 .         .    g.95042
 GGAGGGTTCTTGAGTATTTTAACACAGGATGATTCTGATTTTCAAG | CATGCCAGAGAGTA    c.4020
 G  G  F  L  S  I  L  T  Q  D  D  S  D  F  Q  A |   C  Q  R  V      p.1340

          .         .         .         .         .         .       g.95102
 TTGGTGGATCTTTTGGTATCTTTGATGAGTTCAAGAACATGTTCAGAAGAGCTAACCCTT       c.4080
 L  V  D  L  L  V  S  L  M  S  S  R  T  C  S  E  E  L  T  L         p.1360

          .         .         .       | 12 .         .         .    g.96539
 CTTTTGAGAATATTTCTGGAGAAATCTCCTTGTACA | AAAATTCTTCTTCTGGGTATTCTG    c.4140
 L  L  R  I  F  L  E  K  S  P  C  T   | K  I  L  L  L  G  I  L      p.1380

          .         .         .         .         .         .       g.96599
 AAAATTATTGAAAGTGATACTACTATGAGCCCTTCACAGTATCTAACCTTCCCTTTACTG       c.4200
 K  I  I  E  S  D  T  T  M  S  P  S  Q  Y  L  T  F  P  L  L         p.1400

          .         .         .         .         .         .       g.96659
 CACGCTCCAAATTTAAGCAACGGTGTTTCATCACAAAAGTATCCTGGGATTTTAAACAGT       c.4260
 H  A  P  N  L  S  N  G  V  S  S  Q  K  Y  P  G  I  L  N  S         p.1420

          .         .         .         .         .         .       g.96719
 AAGGCCATGGGTTTATTGAGAAGAGCACGAGTTTCACGGAGCAAGAAAGAGGCTGATAGA       c.4320
 K  A  M  G  L  L  R  R  A  R  V  S  R  S  K  K  E  A  D  R         p.1440

          .         .         .         .         .         .       g.96779
 GAGAGTTTTCCCCATCGGCTGCTTTCATCTTGGCACATAGCCCCAGTCCACCTGCCGTTG       c.4380
 E  S  F  P  H  R  L  L  S  S  W  H  I  A  P  V  H  L  P  L         p.1460

          .         .         .         .         .         .       g.96839
 CTGGGGCAAAACTGCTGGCCACACCTATCAGAAGGTTTCAGTGTTTCCCTGTGGTTTAAT       c.4440
 L  G  Q  N  C  W  P  H  L  S  E  G  F  S  V  S  L  W  F  N         p.1480

          .         .         .         .         .         .       g.96899
 GTGGAGTGTATCCATGAAGCTGAGAGTACTACAGAAAAAGGAAAGAAGATAAAGAAAAGA       c.4500
 V  E  C  I  H  E  A  E  S  T  T  E  K  G  K  K  I  K  K  R         p.1500

          .         .         .         .    | 13    .         .    g.99812
 AACAAATCATTAATTTTACCAGATAGCAGTTTTGATGGTACAG | AGAGCGACAGACCAGAA    c.4560
 N  K  S  L  I  L  P  D  S  S  F  D  G  T  E |   S  D  R  P  E      p.1520

          .         .         .         .         .         .       g.99872
 GGTGCAGAGTACATAAATCCTGGTGAAAGACTCATAGAAGAAGGATGTATTCATATAATT       c.4620
 G  A  E  Y  I  N  P  G  E  R  L  I  E  E  G  C  I  H  I  I         p.1540

          .         .         .         .         .         .       g.99932
 TCACTGGGATCCAAAGCGTTGATGATCCAAGTGTGGGCTGATCCCCACAATGCCACTCTT       c.4680
 S  L  G  S  K  A  L  M  I  Q  V  W  A  D  P  H  N  A  T  L         p.1560

          | 14         .         .         .         .         .    g.101319
 ATCTTTCG | TGTGTGCATGGATTCAAATGATGACATGAAAGCTGTTTTACTAGCACAGGTT    c.4740
 I  F  R  |  V  C  M  D  S  N  D  D  M  K  A  V  L  L  A  Q  V      p.1580

          .         .         .         .         .         .       g.101379
 GAATCACAGGAGAATATTTTCCTCCCAAGCAAATGGCAACATTTAGTACTCACCTACTTA       c.4800
 E  S  Q  E  N  I  F  L  P  S  K  W  Q  H  L  V  L  T  Y  L         p.1600

          .         .         .         .         .         .       g.101439
 CAGCAGCCCCAAGGGAAAAGGAGGATTCATGGGAAAATCTCCATATGGGTCTCTGGACAG       c.4860
 Q  Q  P  Q  G  K  R  R  I  H  G  K  I  S  I  W  V  S  G  Q         p.1620

    | 15     .         .         .         .         .         .    g.106611
 AG | GAAGCCTGATGTTACTTTGGATTTTATGCTTCCAAGAAAAACAAGTTTGTCATCTGAT    c.4920
 R  |  K  P  D  V  T  L  D  F  M  L  P  R  K  T  S  L  S  S  D      p.1640

          .         .         .         .         .         .       g.106671
 AGCAATAAAACATTTTGCATGATTGGCCATTGTTTATCATCCCAAGAAGAGTTTTTGCAG       c.4980
 S  N  K  T  F  C  M  I  G  H  C  L  S  S  Q  E  E  F  L  Q         p.1660

          .         .         .         .    | 16    .         .    g.107602
 TTGGCTGGAAAATGGGACCTGGGAAATTTGCTTCTCTTCAACG | GAGCTAAGGTTGGTTCA    c.5040
 L  A  G  K  W  D  L  G  N  L  L  L  F  N  G |   A  K  V  G  S      p.1680

          .         .         .         .         .         .       g.107662
 CAAGAGGCCTTTTATCTGTATGCTTGTGGACCCAACCATACATCTGTAATGCCATGTAAG       c.5100
 Q  E  A  F  Y  L  Y  A  C  G  P  N  H  T  S  V  M  P  C  K         p.1700

          .         .         .         .         .         .       g.107722
 TATGGCAAGCCAGTCAATGACTACTCCAAATATATTAATAAAGAAATTTTGCGATGTGAA       c.5160
 Y  G  K  P  V  N  D  Y  S  K  Y  I  N  K  E  I  L  R  C  E         p.1720

          .         .         .         .         .     | 17   .    g.111338
 CAAATCAGAGAACTTTTTATGACCAAGAAAGATGTGGATATTGGTCTCTTAATT | GAAAGT    c.5220
 Q  I  R  E  L  F  M  T  K  K  D  V  D  I  G  L  L  I   | E  S      p.1740

          .         .         .         .         .         .       g.111398
 CTTTCAGTTGTTTATACAACTTACTGTCCTGCTCAGTATACCATCTATGAACCAGTGATT       c.5280
 L  S  V  V  Y  T  T  Y  C  P  A  Q  Y  T  I  Y  E  P  V  I         p.1760

          .         .         .         .         .         .       g.111458
 AGACTTAAAGGTCAAATGAAAACCCAACTCTCTCAAAGACCCTTCAGCTCAAAAGAAGTT       c.5340
 R  L  K  G  Q  M  K  T  Q  L  S  Q  R  P  F  S  S  K  E  V         p.1780

          .         .         .         .         .         .       g.111518
 CAGAGCATCTTATTAGAACCTCATCATCTAAAGAATCTCCAACCTACTGAATATAAAACT       c.5400
 Q  S  I  L  L  E  P  H  H  L  K  N  L  Q  P  T  E  Y  K  T         p.1800

          .         .         .         .         .         .       g.111578
 ATTCAAGGCATTCTGCACGAAATTGGTGGAACTGGCATATTTGTTTTTCTCTTTGCCAGG       c.5460
 I  Q  G  I  L  H  E  I  G  G  T  G  I  F  V  F  L  F  A  R         p.1820

  | 18       .         .         .         .         .         .    g.113614
  | GTTGTTGAACTCAGTAGCTGTGAAGAAACTCAAGCATTAGCACTGCGAGTTATACTCTCA    c.5520
  | V  V  E  L  S  S  C  E  E  T  Q  A  L  A  L  R  V  I  L  S      p.1840

          .         .         .         .         .         .       g.113674
 TTAATTAAATACAACCAACAAAGAGTACATGAATTAGAAAATTGTAATGGACTTTCTATG       c.5580
 L  I  K  Y  N  Q  Q  R  V  H  E  L  E  N  C  N  G  L  S  M         p.1860

          .         .         .         .         .     | 19   .    g.114655
 ATTCATCAGGTGTTGATCAAACAAAAATGCATTGTTGGGTTTTACATTTTGAAG | ACCCTT    c.5640
 I  H  Q  V  L  I  K  Q  K  C  I  V  G  F  Y  I  L  K   | T  L      p.1880

          .         .         .         .         .         .       g.114715
 CTTGAAGGATGCTGTGGTGAAGATATTATTTATATGAATGAGAATGGAGAGTTTAAGTTG       c.5700
 L  E  G  C  C  G  E  D  I  I  Y  M  N  E  N  G  E  F  K  L         p.1900

          .         .         .         .         .         .       g.114775
 GATGTAGACTCTAATGCTATAATCCAAGATGTTAAGCTGTTAGAGGAACTATTGCTTGAC       c.5760
 D  V  D  S  N  A  I  I  Q  D  V  K  L  L  E  E  L  L  L  D         p.1920

          .         .     | 20   .         .         .         .    g.118379
 TGGAAGATATGGAGTAAAGCAGAG | CAAGGTGTTTGGGAAACTTTGCTAGCAGCTCTAGAA    c.5820
 W  K  I  W  S  K  A  E   | Q  G  V  W  E  T  L  L  A  A  L  E      p.1940

          .         .         .         .         .         .       g.118439
 GTCCTCATCAGAGCAGATCACCACCAGCAGATGTTTAATATTAAGCAGTTATTGAAAGCT       c.5880
 V  L  I  R  A  D  H  H  Q  Q  M  F  N  I  K  Q  L  L  K  A         p.1960

          .         .         .         .   | 21     .         .    g.122381
 CAAGTGGTTCATCACTTTCTACTGACTTGTCAGGTTTTGCAG | GAATACAAAGAGGGGCAA    c.5940
 Q  V  V  H  H  F  L  L  T  C  Q  V  L  Q   | E  Y  K  E  G  Q      p.1980

          .         .         .         .         .         .       g.122441
 CTCACACCCATGCCCCGAGAGGTTTGTAGATCATTTGTGAAAATTATAGCAGAAGTCCTT       c.6000
 L  T  P  M  P  R  E  V  C  R  S  F  V  K  I  I  A  E  V  L         p.2000

          .         .         .         .         .         .       g.122501
 GGATCTCCTCCAGATTTGGAATTATTGACAATTATCTTCAATTTCCTTTTAGCAGTTCAC       c.6060
 G  S  P  P  D  L  E  L  L  T  I  I  F  N  F  L  L  A  V  H         p.2020

          .         .         .         .         .         .       g.122561
 CCTCCTACTAATACTTACGTTTGTCACAATCCCACGAACTTCTACTTTTCTTTGCACATA       c.6120
 P  P  T  N  T  Y  V  C  H  N  P  T  N  F  Y  F  S  L  H  I         p.2040

   | 22      .         .         .         .         .         .    g.125848
 G | ATGGCAAGATCTTTCAGGAGAAAGTGCGGTCAATCATGTACCTGAGGCATTCCAGCAGT    c.6180
 D |   G  K  I  F  Q  E  K  V  R  S  I  M  Y  L  R  H  S  S  S      p.2060

          .         .         .         .         .         .       g.125908
 GGAGGAAGGTCCCTTATGAGCCCTGGATTTATGGTAATAAGCCCATCTGGTTTTACTGCT       c.6240
 G  G  R  S  L  M  S  P  G  F  M  V  I  S  P  S  G  F  T  A         p.2080

          .    | 23    .         .         .         .         .    g.129088
 TCACCATATGAAG | GAGAGAATTCCTCTAATATTATTCCACAACAGATGGCCGCCCATATG    c.6300
 S  P  Y  E  G |   E  N  S  S  N  I  I  P  Q  Q  M  A  A  H  M      p.2100

          .         .         .         .         .         .       g.129148
 CTGCGTTCTAGAAGCCTACCAGCATTCCCTACTTCTTCACTACTAACGCAATCACAAAAA       c.6360
 L  R  S  R  S  L  P  A  F  P  T  S  S  L  L  T  Q  S  Q  K         p.2120

          .         .         .         .         .         .       g.129208
 CTGACTGGAAGTTTGGGTTGTAGTATCGACAGGTTACAAAATATTGCAGATACTTATGTT       c.6420
 L  T  G  S  L  G  C  S  I  D  R  L  Q  N  I  A  D  T  Y  V         p.2140

          .         .         .         .         .         .       g.129268
 GCCACCCAATCAAAGAAACAAAATTCTTTGGGGAGTTCCGACACACTGAAAAAAGGCAAA       c.6480
 A  T  Q  S  K  K  Q  N  S  L  G  S  S  D  T  L  K  K  G  K         p.2160

          .         .         .         .         .         .       g.129328
 GAGGACGCATTCATCAGTAGCTGTGAGTCTGCAAAAACTGTTTGTGAAATGGAAGCTGTC       c.6540
 E  D  A  F  I  S  S  C  E  S  A  K  T  V  C  E  M  E  A  V         p.2180

          .         .         .         .         .         .       g.129388
 CTCTCAGCCCAGGTCTCTGTCAGTGATGTCCCAAAGGGAGTGCTGGGATTTCCAGTGGTC       c.6600
 L  S  A  Q  V  S  V  S  D  V  P  K  G  V  L  G  F  P  V  V         p.2200

          .         .         .         .         .         .       g.129448
 AAAGCAGATCATAAACAGTTGGGAGCAGAACCCAGGTCAGAAGATGACAGTCCTGGGGAT       c.6660
 K  A  D  H  K  Q  L  G  A  E  P  R  S  E  D  D  S  P  G  D         p.2220

          .         .         .         .         .         .       g.129508
 GAGTCCTGCCCACGCCGACCTGATTACCTAAAGGGATTGGCCTCCTTCCAGCGAAGCCAC       c.6720
 E  S  C  P  R  R  P  D  Y  L  K  G  L  A  S  F  Q  R  S  H         p.2240

          .         .         .         .         .         .       g.129568
 AGCACTATTGCAAGCCTTGGGCTAGCTTTTCCTTCACAGAACGGATCTGCAGCTGTTGGC       c.6780
 S  T  I  A  S  L  G  L  A  F  P  S  Q  N  G  S  A  A  V  G         p.2260

          .         .         .         .         .         .       g.129628
 CGTTGGCCAAGTCTTGTTGATAGAAACACTGATGATTGGGAAAACTTTGCCTATTCTCTT       c.6840
 R  W  P  S  L  V  D  R  N  T  D  D  W  E  N  F  A  Y  S  L         p.2280

          .         .         .         .  | 24      .         .    g.131201
 GGTTATGAGCCAAATTACAACCGAACTGCAAGTGCTCACAG | TGTAACTGAAGACTGTTTG    c.6900
 G  Y  E  P  N  Y  N  R  T  A  S  A  H  S  |  V  T  E  D  C  L      p.2300

          .         .         .         .         .         .       g.131261
 GTACCTATATGCTGTGGATTATATGAACTCCTAAGTGGGGTTCTTCTTATCCTGCCTGAT       c.6960
 V  P  I  C  C  G  L  Y  E  L  L  S  G  V  L  L  I  L  P  D         p.2320

          .         .         .         .         .         .       g.131321
 GTTTTGCTTGAAGATGTGATGGACAAGCTTATTCAAGCAGATACACTTTTGGTCCTCGTT       c.7020
 V  L  L  E  D  V  M  D  K  L  I  Q  A  D  T  L  L  V  L  V         p.2340

          .         .         .          | 25        .         .    g.133014
 AACCACCCATCACCAGCTATACAACAAGGTGTTATTAAA | CTATTAGATGCATATTTTGCT    c.7080
 N  H  P  S  P  A  I  Q  Q  G  V  I  K   | L  L  D  A  Y  F  A      p.2360

          .         .         .         .         .         .       g.133074
 AGAGCATCTAAGGAACAAAAAGATAAATTTCTGAAGAATCGTGGATTTTCCTTGCTAGCC       c.7140
 R  A  S  K  E  Q  K  D  K  F  L  K  N  R  G  F  S  L  L  A         p.2380

          .         .         .         .         .         .       g.133134
 AACCAGTTGTATCTTCATCGAGGAACTCAAGAATTGTTAGAATGCTTCATCGAAATGTTC       c.7200
 N  Q  L  Y  L  H  R  G  T  Q  E  L  L  E  C  F  I  E  M  F         p.2400

          .         .          | 26        .         .         .    g.135397
 TTTGGTCGACATATTGGCCTTGATGAAGA | ATTTGATCTGGAAGATGTGAGAAACATGGGA    c.7260
 F  G  R  H  I  G  L  D  E  E  |  F  D  L  E  D  V  R  N  M  G      p.2420

          .         .         .         .         .         .       g.135457
 TTGTTTCAGAAGTGGTCTGTCATTCCTATTCTGGGACTAATAGAGACCTCTCTATATGAC       c.7320
 L  F  Q  K  W  S  V  I  P  I  L  G  L  I  E  T  S  L  Y  D         p.2440

          .         .         .         .         .         .       g.135517
 AACATACTCTTGCATAATGCTCTTTTACTTCTTCTCCAAATTTTAAATTCTTGTTCTAAG       c.7380
 N  I  L  L  H  N  A  L  L  L  L  L  Q  I  L  N  S  C  S  K         p.2460

          .         .         .         .         .         .       g.135577
 GTAGCAGATATGTTGCTGGATAATGGTCTACTCTATGTGTTATGTAATACAGTAGCAGCC       c.7440
 V  A  D  M  L  L  D  N  G  L  L  Y  V  L  C  N  T  V  A  A         p.2480

          .         . | 27       .         .         .         .    g.136509
 CTGAATGGATTAGAAAAGAA | CATTCCCATGAGTGAATATAAATTGCTTGCTTGTGATATA    c.7500
 L  N  G  L  E  K  N  |  I  P  M  S  E  Y  K  L  L  A  C  D  I      p.2500

          .         .         .         .         .         .       g.136569
 CAGCAACTTTTCATAGCAGTTACAATTCATGCTTGCAGTTCCTCAGGCTCACAATATTTT       c.7560
 Q  Q  L  F  I  A  V  T  I  H  A  C  S  S  S  G  S  Q  Y  F         p.2520

          .         .         .         .         .         .       g.136629
 AGGGTTATTGAAGACCTTATTGTAATGCTTGGATATCTTCAAAATAGCAAAAACAAGAGG       c.7620
 R  V  I  E  D  L  I  V  M  L  G  Y  L  Q  N  S  K  N  K  R         p.2540

         | 28.         .         .         .         .         .    g.137331
 ACACAAA | ATATGGCTGTTGCACTACAGCTTAGAGTTCTCCAGGCTGCTATGGAATTTATA    c.7680
 T  Q  N |   M  A  V  A  L  Q  L  R  V  L  Q  A  A  M  E  F  I      p.2560

          .         .         .         .         .         .       g.137391
 AGGACCACCGCAAATCATGACTCTGAAAACCTCACAGATTCACTCCAGTCACCTTCTGCT       c.7740
 R  T  T  A  N  H  D  S  E  N  L  T  D  S  L  Q  S  P  S  A         p.2580

          .         .         .         . | 29       .         .    g.142133
 CCCCATCATGCAGTAGTTCAAAAGCGGAAAAGCATTGCTG | GTCCTCGAAAATTTCCCCTT    c.7800
 P  H  H  A  V  V  Q  K  R  K  S  I  A  G |   P  R  K  F  P  L      p.2600

          .         .         .         .         .         .       g.142193
 GCTCAAACTGAATCGCTTCTGATGAAAATGCGTTCAGTGGCAAATGATGAGCTTCATGTG       c.7860
 A  Q  T  E  S  L  L  M  K  M  R  S  V  A  N  D  E  L  H  V         p.2620

          .         .         .         .         .         .       g.142253
 ATGATGCAACGGAGAATGAGCCAAGAGAACCCTAGCCAAGCAACTGAAACGGAACTTGCG       c.7920
 M  M  Q  R  R  M  S  Q  E  N  P  S  Q  A  T  E  T  E  L  A         p.2640

          .         .         .         .         .   | 30     .    g.144491
 CAGAGACTACAGAGGCTCACTGTTTTAGCAGTCAACAGGATTATTTATCAAG | AATTTAAT    c.7980
 Q  R  L  Q  R  L  T  V  L  A  V  N  R  I  I  Y  Q  E |   F  N      p.2660

          .         .         .         .         .         .       g.144551
 TCAGACATTATTGACATTTTGAGAACTCCAGAAAATGTAACTCAAAGCAAGACCTCAGTT       c.8040
 S  D  I  I  D  I  L  R  T  P  E  N  V  T  Q  S  K  T  S  V         p.2680

          .         .         .         .         .         .       g.144611
 TTCCAGACCGAAATTTCTGAGGAAAATATTCATCATGAACAGTCTTCTGTTTTCAATCCA       c.8100
 F  Q  T  E  I  S  E  E  N  I  H  H  E  Q  S  S  V  F  N  P         p.2700

          .         .         .         .         .  | 31      .    g.147021
 TTTCAGAAAGAAATTTTTACATATCTGGTAGAAGGATTCAAAGTATCTATT | GGTTCAAGT    c.8160
 F  Q  K  E  I  F  T  Y  L  V  E  G  F  K  V  S  I   | G  S  S      p.2720

          .         .         .         .         .         .       g.147081
 AAAGCCAGTGGTTCCAAGCAGCAATGGACTAAAATTCTGTGGTCTTGTAAGGAGACCTTC       c.8220
 K  A  S  G  S  K  Q  Q  W  T  K  I  L  W  S  C  K  E  T  F         p.2740

          .         .         .         .         .         .       g.147141
 CGAATGCAGCTTGGGAGACTACTAGTGCATATTTTGTCGCCAGCCCACGCTGCACAAGAG       c.8280
 R  M  Q  L  G  R  L  L  V  H  I  L  S  P  A  H  A  A  Q  E         p.2760

          .         .         .         .         .         .       g.147201
 AGAAAGCAAATTTTTGAAATAGTTCATGAACCAAATCATCAGGAAATACTACGAGACTGT       c.8340
 R  K  Q  I  F  E  I  V  H  E  P  N  H  Q  E  I  L  R  D  C         p.2780

          .         | 32         .         .         .         .    g.154023
 CTCAGCCCATCCCTACAA | CATGGAGCCAAGTTAGTTTTGTATTTGTCAGAGTTGATACAT    c.8400
 L  S  P  S  L  Q   | H  G  A  K  L  V  L  Y  L  S  E  L  I  H      p.2800

          .         .         .         .         .         .       g.154083
 AATCACCAAGGTGAATTGACTGAAGAAGAGCTAGGCACAGCAGAACTGCTTATGAATGCT       c.8460
 N  H  Q  G  E  L  T  E  E  E  L  G  T  A  E  L  L  M  N  A         p.2820

          .         .         .         .         .         .       g.154143
 TTGAAGTTATGTGGTCACAAGTGCATCCCTCCCAGTGCATCAACAAAAGCAGACCTTATT       c.8520
 L  K  L  C  G  H  K  C  I  P  P  S  A  S  T  K  A  D  L  I         p.2840

          .      | 33  .         .         .         .         .    g.154779
 AAAATGATCAAAGAG | GAACAAAAGAAATATGAAACTGAAGAAGGAGTGAATAAAGCTGCT    c.8580
 K  M  I  K  E   | E  Q  K  K  Y  E  T  E  E  G  V  N  K  A  A      p.2860

          .         .         .   | 34     .         .         .    g.154977
 TGGCAGAAAACAGTTAACAATAATCAACAAAG | TCTCTTTCAGCGTCTGGATTCAAAATCA    c.8640
 W  Q  K  T  V  N  N  N  Q  Q  S  |  L  F  Q  R  L  D  S  K  S      p.2880

          .         .         .         .         .         .       g.155037
 AAGGATATATCTAAAATAGCTGCAGATATCACCCAGGCAGTGTCTCTCTCCCAAGGAAAT       c.8700
 K  D  I  S  K  I  A  A  D  I  T  Q  A  V  S  L  S  Q  G  N         p.2900

          .         .         .         .         .         .       g.155097
 GAGAGAAAAAAGGTGATCCAGCATATTAGAGGAATGTATAAAGTAGATTTGAGTGCCAGC       c.8760
 E  R  K  K  V  I  Q  H  I  R  G  M  Y  K  V  D  L  S  A  S         p.2920

          .         .         .         .  | 35      .         .    g.157482
 AGACATTGGCAGGAACTTATTCAGCAGCTGACACATGATAG | AGCAGTATGGTATGACCCC    c.8820
 R  H  W  Q  E  L  I  Q  Q  L  T  H  D  R  |  A  V  W  Y  D  P      p.2940

          .         .         .         .         .         .       g.157542
 ATCTACTATCCAACCTCATGGCAGTTGGATCCAACAGAAGGGCCAAATCGAGAGAGGAGA       c.8880
 I  Y  Y  P  T  S  W  Q  L  D  P  T  E  G  P  N  R  E  R  R         p.2960

          .         .         .         .         .         .       g.157602
 CGTTTACAGAGATGTTATTTAACTATTCCAAATAAGTATCTCCTTAGGGATAGACAGAAA       c.8940
 R  L  Q  R  C  Y  L  T  I  P  N  K  Y  L  L  R  D  R  Q  K         p.2980

         | 36.         .         .         .         .         .    g.157750
 TCAGAAG | ATGTTGTCAAACCACCACTCTCTTACCTGTTTGAAGACAAAACTCATTCTTCT    c.9000
 S  E  D |   V  V  K  P  P  L  S  Y  L  F  E  D  K  T  H  S  S      p.3000

          .         .         .         .     | 37   .         .    g.158999
 TTCTCTTCTACTGTCAAAGACAAAGCTGCAAGTGAATCTATAAG | AGTGAATCGAAGATGC    c.9060
 F  S  S  T  V  K  D  K  A  A  S  E  S  I  R  |  V  N  R  R  C      p.3020

          .         .         .         .       | 38 .         .    g.160523
 ATCAGTGTTGCACCATCTAGAGAGACAGCTGGTGAATTGTTACTAG | GTAAATGTGGAATG    c.9120
 I  S  V  A  P  S  R  E  T  A  G  E  L  L  L  G |   K  C  G  M      p.3040

          .         .         .         .   | 39     .         .    g.164478
 TATTTTGTGGAAGATAATGCTTCTGATACAGTTGAAAGTTCG | AGCCTTCAGGGAGAGTTG    c.9180
 Y  F  V  E  D  N  A  S  D  T  V  E  S  S   | S  L  Q  G  E  L      p.3060

          .         .         .         .         .         .       g.164538
 GAACCAGCATCATTTTCCTGGACATATGAAGAAATTAAAGAAGTTCACAAGCGTTGGTGG       c.9240
 E  P  A  S  F  S  W  T  Y  E  E  I  K  E  V  H  K  R  W  W         p.3080

          .         .         .         .         .         .       g.164598
 CAATTGAGAGATAATGCTGTAGAAATCTTTCTAACAAATGGCAGAACACTCCTGTTGGCA       c.9300
 Q  L  R  D  N  A  V  E  I  F  L  T  N  G  R  T  L  L  L  A         p.3100

          .      | 40  .         .         .         .         .    g.167780
 TTTGATAACACCAAG | GTTCGTGATGATGTATACCACAATATACTCACAAATAACCTCCCT    c.9360
 F  D  N  T  K   | V  R  D  D  V  Y  H  N  I  L  T  N  N  L  P      p.3120

          .         .         .         .         .         .       g.167840
 AATCTTCTGGAATATGGTAACATCACCGCTCTGACAAATTTATGGTATACTGGGCAAATT       c.9420
 N  L  L  E  Y  G  N  I  T  A  L  T  N  L  W  Y  T  G  Q  I         p.3140

          .         .         .         .         .         .       g.167900
 ACTAATTTTGAATATTTGACTCACTTAAACAAACATGCTGGCCGATCCTTCAATGATCTC       c.9480
 T  N  F  E  Y  L  T  H  L  N  K  H  A  G  R  S  F  N  D  L         p.3160

          .         .         .         .         .         .       g.167960
 ATGCAGTATCCTGTGTTCCCATTTATACTTGCTGACTACGTTAGTGAGACACTTGACCTC       c.9540
 M  Q  Y  P  V  F  P  F  I  L  A  D  Y  V  S  E  T  L  D  L         p.3180

          .         . | 41       .         .         .         .    g.171902
 AATGATCTGTTGATATACAG | AAATCTCTCTAAACCTATAGCTGTTCAGTATAAAGAAAAA    c.9600
 N  D  L  L  I  Y  R  |  N  L  S  K  P  I  A  V  Q  Y  K  E  K      p.3200

          .         .        | 42.         .         .         .    g.173316
 GAAGATCGTTATGTGGACACATACAAG | TACTTGGAGGAAGAGTACCGCAAAGGAGCCAGA    c.9660
 E  D  R  Y  V  D  T  Y  K   | Y  L  E  E  E  Y  R  K  G  A  R      p.3220

          .         .         .         .         .         .       g.173376
 GAAGATGACCCCATGCCTCCCGTGCAGCCCTATCACTATGGCTCCCACTATTCCAATAGC       c.9720
 E  D  D  P  M  P  P  V  Q  P  Y  H  Y  G  S  H  Y  S  N  S         p.3240

          .         .         .         .         .         .       g.173436
 GGCACTGTGCTTCACTTCCTGGTCAGGATGCCTCCTTTCACTAAAATGTTTTTAGCCTAT       c.9780
 G  T  V  L  H  F  L  V  R  M  P  P  F  T  K  M  F  L  A  Y         p.3260

      | 43   .         .         .         .         .         .    g.176499
 CAAG | ATCAAAGTTTTGACATTCCAGACAGAACTTTTCATTCTACAAATACAACTTGGCGA    c.9840
 Q  D |   Q  S  F  D  I  P  D  R  T  F  H  S  T  N  T  T  W  R      p.3280

          .         .         .         .         .         .       g.176559
 CTCTCATCTTTTGAATCTATGACTGATGTGAAAGAACTTATCCCAGAGTTTTTCTATCTT       c.9900
 L  S  S  F  E  S  M  T  D  V  K  E  L  I  P  E  F  F  Y  L         p.3300

          .         .      | 44  .         .         .         .    g.179367
 CCAGAGTTCCTAGTTAACCGTGAAG | GTTTTGATTTTGGTGTGCGTCAGAATGGTGAACGG    c.9960
 P  E  F  L  V  N  R  E  G |   F  D  F  G  V  R  Q  N  G  E  R      p.3320

          .         .         .         .         .         .       g.179427
 GTTAATCACGTCAACCTTCCCCCTTGGGCGCGTAATGATCCTCGTCTTTTTATCCTCATC       c.10020
 V  N  H  V  N  L  P  P  W  A  R  N  D  P  R  L  F  I  L  I         p.3340

          .         .         .         .         .         .       g.179487
 CATCGGCAGGCTCTAGAGTCTGACTACGTGTCGCAGAACATCTGTCAGTGGATTGACTTG       c.10080
 H  R  Q  A  L  E  S  D  Y  V  S  Q  N  I  C  Q  W  I  D  L         p.3360

          .         .         .         .         .         .       g.179547
 GTGTTTGGGTATAAGCAAAAGGGGAAGGCTTCTGTTCAAGCGATCAATGTTTTTCATCCT       c.10140
 V  F  G  Y  K  Q  K  G  K  A  S  V  Q  A  I  N  V  F  H  P         p.3380

     | 45    .         .         .         .         .         .    g.185720
 GCT | ACATATTTTGGAATGGATGTCTCTGCAGTTGAAGATCCAGTTCAGAGACGAGCGCTA    c.10200
 A   | T  Y  F  G  M  D  V  S  A  V  E  D  P  V  Q  R  R  A  L      p.3400

          .         .         .         .         .         .       g.185780
 GAAACCATGATAAAAACCTACGGGCAGACTCCCCGTCAGCTGTTCCACATGGCCCATGTG       c.10260
 E  T  M  I  K  T  Y  G  Q  T  P  R  Q  L  F  H  M  A  H  V         p.3420

          .         .         .         .         .         .       g.185840
 AGCAGACCTGGAGCCAAGCTCAATATTGAAGGAGAGCTTCCAGCTGCTGTGGGGTTGCTA       c.10320
 S  R  P  G  A  K  L  N  I  E  G  E  L  P  A  A  V  G  L  L         p.3440

          .         .         .         .         .     | 46   .    g.191374
 GTGCAGTTTGCTTTCAGGGAGACCCGAGAACAGGTCAAAGAAATCACCTATCCG | AGTCCT    c.10380
 V  Q  F  A  F  R  E  T  R  E  Q  V  K  E  I  T  Y  P   | S  P      p.3460

          .         .         .         .         .         .       g.191434
 TTGTCATGGATAAAAGGCTTGAAATGGGGGGAATACGTGGGTTCCCCCAGTGCTCCAGTA       c.10440
 L  S  W  I  K  G  L  K  W  G  E  Y  V  G  S  P  S  A  P  V         p.3480

          .         .         .         .         .         .       g.191494
 CCTGTGGTCTGCTTCAGCCAGCCCCACGGAGAAAGATTTGGCTCTCTCCAGGCTCTGCCC       c.10500
 P  V  V  C  F  S  Q  P  H  G  E  R  F  G  S  L  Q  A  L  P         p.3500

          .         .         .         .         .         .       g.191554
 ACCAGAGCAATCTGTGGTTTGTCACGGAATTTCTGTCTTCTGATGACATATAGCAAGGAA       c.10560
 T  R  A  I  C  G  L  S  R  N  F  C  L  L  M  T  Y  S  K  E         p.3520

      | 47   .         .         .         .         .         .    g.195210
 CAAG | GTGTGAGAAGCATGAACAGTACGGACATTCAGTGGTCAGCCATCCTGAGCTGGGGA    c.10620
 Q  G |   V  R  S  M  N  S  T  D  I  Q  W  S  A  I  L  S  W  G      p.3540

          .         .         .         .         .         .       g.195270
 TATGCTGATAATATTTTAAGGTTGAAGAGTAAACAAAGTGAGCCTCCAGTAAACTTTATT       c.10680
 Y  A  D  N  I  L  R  L  K  S  K  Q  S  E  P  P  V  N  F  I         p.3560

          .         .  | 48      .         .         .         .    g.201632
 CAAAGTTCACAACAGTACCAG | GTGACTAGTTGTGCTTGGGTGCCTGACAGTTGCCAGCTG    c.10740
 Q  S  S  Q  Q  Y  Q   | V  T  S  C  A  W  V  P  D  S  C  Q  L      p.3580

          .         .         .         .         .         .       g.201692
 TTTACTGGAAGCAAATGCGGTGTCATCACAGCCTACACAAACAGATTTACAAGCAGCACG       c.10800
 F  T  G  S  K  C  G  V  I  T  A  Y  T  N  R  F  T  S  S  T         p.3600

  | 49       .         .         .         .         .         .    g.211081
  | CCATCAGAAATAGAAATGGAGACTCAAATACATCTCTATGGTCACACAGAAGAGATAACC    c.10860
  | P  S  E  I  E  M  E  T  Q  I  H  L  Y  G  H  T  E  E  I  T      p.3620

          .         .         .         .         .         .       g.211141
 AGCTTATTTGTTTGCAAACCATACAGTATACTGATAAGTGTGAGCAGAGACGGAACCTGC       c.10920
 S  L  F  V  C  K  P  Y  S  I  L  I  S  V  S  R  D  G  T  C         p.3640

          .         . | 50       .         .         .         .    g.211492
 ATCATATGGGATTTAAACAG | GTTATGCTATGTACAAAGTCTGGCGGGACACAAAAGCCCT    c.10980
 I  I  W  D  L  N  R  |  L  C  Y  V  Q  S  L  A  G  H  K  S  P      p.3660

          .         .         .         .         .         | 51    g.224021
 GTCACAGCTGTCTCTGCCAGTGAAACCTCAGGTGATATTGCTACTGTGTGTGATTCAG | CT    c.11040
 V  T  A  V  S  A  S  E  T  S  G  D  I  A  T  V  C  D  S  A |       p.3680

          .         .         .         .         .         .       g.224081
 GGCGGAGGCAGTGACCTCAGACTCTGGACGGTGAACGGGGATCTCGTTGGACATGTCCAC       c.11100
 G  G  G  S  D  L  R  L  W  T  V  N  G  D  L  V  G  H  V  H         p.3700

          .         .         .         .         .         .       g.224141
 TGCAGGGAGATCATCTGTTCCGTGGCTTTCTCCAACCAGCCTGAGGGAGTATCTATCAAT       c.11160
 C  R  E  I  I  C  S  V  A  F  S  N  Q  P  E  G  V  S  I  N         p.3720

          .         .         .      | 52  .         .         .    g.224610
 GTAATCGCTGGGGGATTAGAAAATGGAATTGTAAG | GTTATGGAGCACATGGGACTTAAAG    c.11220
 V  I  A  G  G  L  E  N  G  I  V  R  |  L  W  S  T  W  D  L  K      p.3740

          .         .         .         .        | 53.         .    g.225575
 CCTGTGAGAGAAATTACATTTCCCAAATCAAATAAGCCCATCATCAG | CCTTACATTTTCT    c.11280
 P  V  R  E  I  T  F  P  K  S  N  K  P  I  I  S  |  L  T  F  S      p.3760

          .         .         .         .         .         .       g.225635
 TGTGATGGCCACCATTTGTACACAGCAAACAGTGATGGGACCGTGATTGCCTGGTGTCGG       c.11340
 C  D  G  H  H  L  Y  T  A  N  S  D  G  T  V  I  A  W  C  R         p.3780

          .         .         .         .         .         .       g.225695
 AAGGACCAGCAGCGCTTGAAACAGCCAATGTTCTATTCCTTCCTTAGCAGCTATGCAGCC       c.11400
 K  D  Q  Q  R  L  K  Q  P  M  F  Y  S  F  L  S  S  Y  A  A         p.3800

                                                                    g.225701
 GGGTGA                                                             c.11406
 G  X                                                               p.3801

          .         .         .         .         .         .       g.225761
 atgcgaatgaacttcacgttctccaaagcactttaactccaaactagatttgttgacttc       c.*60

          .         .         .         .         .         .       g.225821
 accagttttaggaggttgaacctaaagaaatggatgactggacaaaccatccaaataatg       c.*120

          .         .         .         .         .         .       g.225881
 ataaagtctattcatctgcacaaaattctgaagagtcacatgatcctaagaggaaagttc       c.*180

          .         .         .         .         .         .       g.225941
 tgttctattttagtgataatctggaagattgtgtcaatatgcactagccaacaagtttta       c.*240

          .         .         .         .         .         .       g.226001
 agcctcgcatggtacattaaaatgatattcttaaaattttttcccaccaaggtattccaa       c.*300

          .         .         .         .         .         .       g.226061
 agaaaatattaaggtctcccctttttctatgattccaaaaggaccagtagaatttaaatt       c.*360

          .         .         .         .         .         .       g.226121
 ggttggttgattgtttatataaaacacactaaaattatattttaaaagtttactgccatg       c.*420

          .         .         .         .         .         .       g.226181
 aaatactcctcccaccacacacacatgctccaaaagaggaaagaaaaaaagataattttt       c.*480

          .         .         .         .         .         .       g.226241
 aggacttgataattgctttctttgagaagcaaattattcagtaggtgcctctgtaccaaa       c.*540

          .         .         .         .         .         .       g.226301
 tattttatggaatatctaaatactaaaataaactatgaatgaatctcaaaattaggcagt       c.*600

          .         .         .         .         .         .       g.226361
 ttttgccagttgctttcttagctcaaaggagaaccagaatttttttgacagccacaaaca       c.*660

          .         .         .         .         .         .       g.226421
 agaatacaggtatcttggatttcagacacattctgtttcttcataaaaattttacttaaa       c.*720

          .         .         .         .         .         .       g.226481
 atctgtaacgctagatattgactatccttagttgagtcactgaggtttaaacacaatggt       c.*780

          .         .         .         .         .         .       g.226541
 aagtcttaaagtctgctatttacagagcattgaatctgtaccaatttgcaatagaaagcc       c.*840

          .         .         .         .         .         .       g.226601
 ttcagtatgcaagaagtttgcatgggtattaagaacacagcctaaataaggcatttgatc       c.*900

          .         .         .         .         .         .       g.226661
 taatctgcaggaagaattttcttccccaaaacagaattataaaagcttactttaaacagg       c.*960

          .         .         .         .         .         .       g.226721
 aggcagaataattcttttaggaaaccatttcattctgtttctactaacctataccatctg       c.*1020

          .         .         .         .         .         .       g.226781
 agaattctaggaagaataataaaatctcgtgtattccacagcaaacttacataccataaa       c.*1080

          .         .         .         .         .         .       g.226841
 gacagaattcctaaacatcttggagccgtctgtctctcccatatgatggctgtctgtata       c.*1140

          .         .         .         .         .         .       g.226901
 tttttacttggggtgctgctttattggctttgaaaacactgtcagataagctcagtaata       c.*1200

          .         .         .         .         .         .       g.226961
 tgttaccatgggataaaaatatgtatccctgcctaagaataacttgtgcatttgttatgg       c.*1260

          .         .         .         .         .         .       g.227021
 aaatttaattcatatggtgtttacagtactacttttgtaacttccagactttctaaaaca       c.*1320

          .         .         .         .         .         .       g.227081
 ttctgcttaaaaaccatataaaatataattccaaagtctctgctgtcaagatagattcga       c.*1380

          .         .         .         .         .         .       g.227141
 gagaaagcacgtggccatgtatgctttaaccttaaactgcatacacatgtagtgatacct       c.*1440

          .         .         .         .         .         .       g.227201
 aggctgcatttagatcaccgtgtgctcaggccaggtgtgaatcctgaggtccatggaggt       c.*1500

          .         .         .         .         .         .       g.227261
 gcagagatgagattactcctattcacgttgaagtgatttgctttgttaacaaaaaattgc       c.*1560

          .         .         .         .         .         .       g.227321
 agctattgtctagctttcatttttttactgagaactttaaattagtcccctattagaata       c.*1620

          .         .         .         .         .         .       g.227381
 gggttgctactcatctttttttaaaaaccgaatttcatcatttatctaaagagaaaatat       c.*1680

          .         .         .         .         .         .       g.227441
 gcagaataactggtcttgttaagagtgcaatattatatttttatgtaaaaataaaaatta       c.*1740

          .         .         .         .         .         .       g.227501
 atttggggggattatttattcagcatgaaacctaatatgtatatgtttgaaatacttcat       c.*1800

          .         .         .         .         .         .       g.227561
 aatgtgcatgttgtagcaaacatttctgtaaattatcacaagctctgttacctttatata       c.*1860

          .         .         .         .                           g.227610
 cactgcctcttcaatttggaaataaatttcataaaaatagatgtaaaca                  c.*1909

 (downstream sequence)
Legend:
Nucleotide numbering (following the rules of the HGVS for a 'Coding DNA Reference Sequence') is indicated at the right of the sequence, counting the A of the ATG translation initiating Methionine as 1. Every 10th nucleotide is indicated by a "." above the sequence. The Lysosomal trafficking regulator protein sequence is shown below the coding DNA sequence, with numbering indicated at the right starting with 1 for the translation initiating Methionine. Every 10th amino acid is shown in bold. The position of introns is indicated by a vertical line, splitting the two exons. The start of the first exon (transcription initiation site) is indicated by a '\', the end of the last exon (poly-A addition site) by a '/'. The exon number is indicated above the first nucleotide(s) of the exon. To aid the description of frame shift variants, all stop codons in the +1 frame are shown in bold while all stop codons in the +2 frame are underlined.

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