(used for variant description)
(last modified April 17, 2024)
This file was created to facilitate the description of sequence variants on transcript NM_001011548.1 in the MAGEA4 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000023.10, covering MAGEA4 transcript NM_001011548.1.
(upstream sequence)
. . . g.5038
agagacaagcgagcttctgcgtctgactcgcagcttga c.-181
. . . . . | 02 . g.15581
gactggcggagggaagcccgcccaggctctataaggagacaag | gttctgagcagacaggc c.-121
. . . . . . | 03 g.15716
caaccggaggacaggattccctggaggccacagaggagcaccaaggagaagatct | gcctg c.-61
. . . . . . g.15776
tgggtccccattgcccagcttttgcctgcactcttgcctgctgccctgaccagagtcatc c.-1
. . . . . . g.15836
ATGTCTTCTGAGCAGAAGAGTCAGCACTGCAAGCCTGAGGAAGGCGTTGAGGCCCAAGAA c.60
M S S E Q K S Q H C K P E E G V E A Q E p.20
. . . . . . g.15896
GAGGCCCTGGGCCTGGTGGGTGCACAGGCTCCTACTACTGAGGAGCAGGAGGCTGCTGTC c.120
E A L G L V G A Q A P T T E E Q E A A V p.40
. . . . . . g.15956
TCCTCCTCCTCTCCTCTGGTCCCTGGCACCCTGGAGGAAGTGCCTGCTGCTGAGTCAGCA c.180
S S S S P L V P G T L E E V P A A E S A p.60
. . . . . . g.16016
GGTCCTCCCCAGAGTCCTCAGGGAGCCTCTGCCTTACCCACTACCATCAGCTTCACTTGC c.240
G P P Q S P Q G A S A L P T T I S F T C p.80
. . . . . . g.16076
TGGAGGCAACCCAATGAGGGTTCCAGCAGCCAAGAAGAGGAGGGGCCAAGCACCTCGCCT c.300
W R Q P N E G S S S Q E E E G P S T S P p.100
. . . . . . g.16136
GACGCAGAGTCCTTGTTCCGAGAAGCACTCAGTAACAAGGTGGATGAGTTGGCTCATTTT c.360
D A E S L F R E A L S N K V D E L A H F p.120
. . . . . . g.16196
CTGCTCCGCAAGTATCGAGCCAAGGAGCTGGTCACAAAGGCAGAAATGCTGGAGAGAGTC c.420
L L R K Y R A K E L V T K A E M L E R V p.140
. . . . . . g.16256
ATCAAAAATTACAAGCGCTGCTTTCCTGTGATCTTCGGCAAAGCCTCCGAGTCCCTGAAG c.480
I K N Y K R C F P V I F G K A S E S L K p.160
. . . . . . g.16316
ATGATCTTTGGCATTGACGTGAAGGAAGTGGACCCCGCCAGCAACACCTACACCCTTGTC c.540
M I F G I D V K E V D P A S N T Y T L V p.180
. . . . . . g.16376
ACCTGCCTGGGCCTTTCCTATGATGGCCTGCTGGGTAATAATCAGATCTTTCCCAAGACA c.600
T C L G L S Y D G L L G N N Q I F P K T p.200
. . . . . . g.16436
GGCCTTCTGATAATCGTCCTGGGCACAATTGCAATGGAGGGCGACAGCGCCTCTGAGGAG c.660
G L L I I V L G T I A M E G D S A S E E p.220
. . . . . . g.16496
GAAATCTGGGAGGAGCTGGGTGTGATGGGGGTGTATGATGGGAGGGAGCACACTGTCTAT c.720
E I W E E L G V M G V Y D G R E H T V Y p.240
. . . . . . g.16556
GGGGAGCCCAGGAAACTGCTCACCCAAGATTGGGTGCAGGAAAACTACCTGGAGTACCGG c.780
G E P R K L L T Q D W V Q E N Y L E Y R p.260
. . . . . . g.16616
CAGGTACCCGGCAGTAATCCTGCGCGCTATGAGTTCCTGTGGGGTCCAAGGGCTCTGGCT c.840
Q V P G S N P A R Y E F L W G P R A L A p.280
. . . . . . g.16676
GAAACCAGCTATGTGAAAGTCCTGGAGCATGTGGTCAGGGTCAATGCAAGAGTTCGCATT c.900
E T S Y V K V L E H V V R V N A R V R I p.300
. . . . . g.16730
GCCTACCCATCCCTGCGTGAAGCAGCTTTGTTAGAGGAGGAAGAGGGAGTCTGA c.954
A Y P S L R E A A L L E E E E G V X p.317
. . . . . . g.16790
gcatgagttgcagccagggctgtggggaaggggcagggctgggccagtgcatctaacagc c.*60
. . . . . . g.16850
cctgtgcagcagcttcccttgcctcgtgtaacatgaggcccattcttcactctgtttgaa c.*120
. . . . . . g.16910
gaaaatagtcagtgttcttagtagtgggtttctattttgttggatgacttggagatttat c.*180
. . . . . . g.16970
ctctgtttccttttacaattgttgaaatgttccttttaatggatggttgaattaacttca c.*240
. . . . . . g.17030
gcatccaagtttatgaatcgtagttaacgtatattgctgttaatatagtttaggagtaag c.*300
. . . . . . g.17090
agtcttgttttttattcagattgggaaatccgttctattttgtgaatttgggacataata c.*360
. . . . . . g.17150
acagcagtggagtaagtatttagaagtgtgaattcaccgtgaaataggtgagataaatta c.*420
. . . . . . g.17210
aaagatacttaattcccgccttatgcctcagtctattctgtaaaatttaaaaaatatata c.*480
. . . . . . g.17270
tgcatacctggatttccttggcttcgtgaatgtaagagaaattaaatctgaataaataat c.*540
. g.17282
tctttctgttaa c.*552
(downstream sequence)
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