(used for variant description)
(last modified June 16, 2015)
This file was created to facilitate the description of sequence variants on transcript NM_005654.4 in the NR2F1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000005.9, covering NR2F1 transcript NM_005654.4.
(upstream sequence)
g.5007
cctcttt c.-1681
. . . . . . g.5067
ctcccccctctctccctcctctcctctctctctcctctcttctctgaacctctcttctct c.-1621
. . . . . . g.5127
ttctcttttcttacatattctactagttgttttccccttcttcttctcctttctctcctt c.-1561
. . . . . . g.5187
tttctccctcctccttgtctcttttactccattcctgcagaagagagagggctaaactta c.-1501
. . . . . . g.5247
aagaaaaaaaaaaggaggaggaggaggaggaggcacccccttcgtattcttcttatcgtt c.-1441
. . . . . . g.5307
attttatacatatatgattttttttggagggagggtgttggttgccggctgaagagcact c.-1381
. . . . . . g.5367
tatttaaaatactaaaaaaagaacatttttgggcgatctccagggtttttttaactagct c.-1321
. . . . . . g.5427
ctgtgtgttatagcagaagaagcagaagaaggagcaagaaagaggaaaagaagaggatta c.-1261
. . . . . . g.5487
tttattcgacctactttggatgtctctctcgcttttcctttttcctttttttggcaatta c.-1201
. . . . . . g.5547
ttttcttctgatttttattttttctatttcgctgtgatttcgtcgccggcgtgaattatc c.-1141
. . . . . . g.5607
ccgtatttttctcccccttccgtcacctcccgaaagaagaaggcagcgagagcccggcgc c.-1081
. . . . . . g.5667
caccggcacaacaaaaagagcaaagtgtgtgatcttcctcgccggctgcctcccgctctc c.-1021
. . . . . . g.5727
cagcgctgccttcctgaatggctggctgcgtccggccctggacctggccccccgacaccc c.-961
. . . . . . g.5787
gcgcgccctgatcgccggcggcagcctcgcccagcgccctgctcggctcaccgcgctccc c.-901
. . . . . . g.5847
cgcactcccgagcccggcgagggctcccgccgggacagcggcggcgccgcgggcggcccc c.-841
. . . . . . g.5907
ggcctccgctcgcgctccggctgcggccccgactcctgctcggactccggcccgggtccc c.-781
. . . . . . g.5967
ggctcctccagcggcgctcgccgcagcagctccggcggcagctccagcggcgcctgcagc c.-721
. . . . . . g.6027
cgcgacctcctcctcctccgccgccgccgccgcctccgccctcgccggcttcctctatgt c.-661
. . . . . . g.6087
cggctcagcccgcgcgctgcgcgtagcccgagcggccggcgggcgggcgcccggcgcggg c.-601
. . . . . . g.6147
tgagcgactgtgtgtgcgagtgtgtgtgtgcgcgggggtgcgggcgaggcggagggcgag c.-541
. . . . . . g.6207
tgtgtgcgcgcgccgtggcccatgcccgccgcccccggcgctgcgccccgcgccgctccc c.-481
. . . . . . g.6267
ggctgccgcctgtgccatttctgattttgcaacttggggaagaagaaaaaagcgagagaa c.-421
. . . . . . g.6327
gggagcttgctcgccggggggtggggaggggggaaggagagcgcggcccccccaggaacg c.-361
. . . . . . g.6387
gagcgcggggggagcgggcgaggggagcaggggtgttggggggggagcctgagagcctgg c.-301
. . . . . . g.6447
gggggctgcaaaaagagagaaagaaaacagcaggaaccacaacaaaacgccagcagggcg c.-241
. . . . . . g.6507
ggcgggcgcgcagcagcagcggggcggccgaggcagtagcggcggcagcggcggcggcgg c.-181
. . . . . . g.6567
cggaggcagcggccggtgtccggctcgggctcggctcctgcgaccccggggcgcccggcg c.-121
. . . . . . g.6627
ggccccccgccccctccccctccccccttccccttccccttcccctcccagcgcgcccgc c.-61
. . . . . . g.6687
gcgccccgcggccctcggcgagcagctcggctccccccagcgctccccgggcccaaagat c.-1
. . . . . . g.6747
ATGGCAATGGTAGTTAGCAGCTGGCGAGATCCGCAGGACGACGTGGCCGGGGGCAACCCC c.60
M A M V V S S W R D P Q D D V A G G N P p.20
. . . . . . g.6807
GGCGGCCCCAACCCCGCAGCGCAGGCGGCCCGCGGCGGCGGCGGCGGCGCCGGCGAGCAG c.120
G G P N P A A Q A A R G G G G G A G E Q p.40
. . . . . . g.6867
CAGCAGCAGGCGGGCTCGGGCGCGCCGCACACGCCGCAGACCCCGGGCCAGCCCGGAGCG c.180
Q Q Q A G S G A P H T P Q T P G Q P G A p.60
. . . . . . g.6927
CCCGCCACCCCCGGCACGGCGGGGGACAAGGGCCAGGGCCCGCCCGGTTCGGGCCAGAGC c.240
P A T P G T A G D K G Q G P P G S G Q S p.80
. . . . . . g.6987
CAGCAGCACATCGAGTGCGTGGTGTGCGGGGACAAGTCGAGCGGCAAGCACTACGGCCAA c.300
Q Q H I E C V V C G D K S S G K H Y G Q p.100
. . . . . . g.7047
TTCACCTGCGAGGGCTGCAAAAGTTTCTTCAAGAGGAGCGTCCGCAGGAACTTAACTTAC c.360
F T C E G C K S F F K R S V R R N L T Y p.120
. . . . . . g.7107
ACATGCCGTGCCAACAGGAACTGTCCCATCGACCAGCACCACCGCAACCAGTGCCAATAC c.420
T C R A N R N C P I D Q H H R N Q C Q Y p.140
. . . . | 02 . . g.9597
TGCCGCCTCAAGAAGTGCCTCAAAGTGGGCATGAGGCGGGAAG | CGGTTCAGCGAGGAAGA c.480
C R L K K C L K V G M R R E A | V Q R G R p.160
. . . . . . g.9657
ATGCCTCCAACCCAGCCCAATCCAGGCCAGTACGCACTCACCAACGGGGACCCCCTCAAC c.540
M P P T Q P N P G Q Y A L T N G D P L N p.180
. . . . . . g.9717
GGCCACTGCTACCTGTCCGGCTACATCTCGCTGCTGCTGCGCGCCGAGCCCTACCCCACG c.600
G H C Y L S G Y I S L L L R A E P Y P T p.200
. . . . . . g.9777
TCGCGCTACGGCAGCCAGTGCATGCAGCCCAACAACATTATGGGCATCGAGAACATCTGC c.660
S R Y G S Q C M Q P N N I M G I E N I C p.220
. . . . . . g.9837
GAGCTGGCCGCGCGCCTGCTCTTCAGCGCCGTCGAGTGGGCCCGCAACATCCCCTTCTTC c.720
E L A A R L L F S A V E W A R N I P F F p.240
. . . . . . g.9897
CCGGATCTGCAGATCACCGACCAGGTGTCCCTGCTACGCCTCACCTGGAGCGAGCTGTTC c.780
P D L Q I T D Q V S L L R L T W S E L F p.260
. . . . . . g.9957
GTGCTCAACGCGGCCCAGTGCTCTATGCCGCTGCACGTGGCGCCGTTGCTGGCCGCCGCC c.840
V L N A A Q C S M P L H V A P L L A A A p.280
. . . . . . g.10017
GGCCTGCATGCCTCGCCCATGTCTGCCGACCGCGTCGTGGCCTTCATGGACCACATCCGC c.900
G L H A S P M S A D R V V A F M D H I R p.300
. . . . . . g.10077
ATCTTCCAGGAGCAGGTGGAGAAGCTCAAGGCGCTACACGTCGACTCAGCCGAGTACAGC c.960
I F Q E Q V E K L K A L H V D S A E Y S p.320
. . . | 03 . . . g.15254
TGCCTCAAAGCCATCGTGCTGTTCACGTCAG | ACGCCTGTGGCCTGTCGGATGCGGCCCAC c.1020
C L K A I V L F T S D | A C G L S D A A H p.340
. . . . . . g.15314
ATCGAGAGCCTGCAGGAGAAGTCGCAGTGCGCACTGGAGGAGTACGTGAGGAGCCAGTAC c.1080
I E S L Q E K S Q C A L E E Y V R S Q Y p.360
. . . . . . g.15374
CCCAACCAGCCCAGCCGTTTTGGCAAACTGCTGCTGCGACTGCCCTCGCTGCGCACCGTG c.1140
P N Q P S R F G K L L L R L P S L R T V p.380
. . . . . . g.15434
TCCTCCTCCGTCATCGAGCAGCTCTTCTTCGTCCGTTTGGTAGGTAAAACCCCCATCGAA c.1200
S S S V I E Q L F F V R L V G K T P I E p.400
. . . . . . g.15494
ACTCTCATCCGCGATATGTTACTGTCTGGGAGCAGCTTCAACTGGCCTTACATGTCCATC c.1260
T L I R D M L L S G S S F N W P Y M S I p.420
. g.15506
CAGTGCTCCTAG c.1272
Q C S X p.423
. . . . . . g.15566
accttgggcgcttcccacctgccccgtccccctagagactcagaggacccacctgggcca c.*60
. . . . . . g.15626
aggactccaaagccgcggggacaccgggaagtgcagcgggccaggcaggctgggtgggag c.*120
. . . . . . g.15686
ggaggagggccgagacaggagcagcccacccagcagaaatacaatccgagctacaaagca c.*180
. . . . . . g.15746
tgggaaaaagagactcttttaggatcagatctgtgagcacgttggcgaggaaaaacaaaa c.*240
(downstream sequence)
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