(used for variant description)
(last modified December 21, 2025)
This file was created to facilitate the description of sequence variants on transcript NM_006186.3 in the NR4A2 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000002.11, covering NR4A2 transcript NM_006186.3.
(upstream sequence)
g.5002
gc c.-421
. . . . . . g.5062
tgacgcgcgctgacgcgcggagactttaggtgcatgttggcagcggcagcgcaagccaca c.-361
. . . . . . g.5122
taaacaaaggcacattggcggccagggccagtccgcccggcggctcgcgcacggctccgc c.-301
. . . . . . g.5182
ggtcccttttgcctgtccagccggccgcctgtccctgctccctccctccgtgaggtgtcc c.-241
. . . . . . g.5242
gggttcccttcgcccagctctcccacccctacccgaccccggcgcccgggctcccagagg c.-181
. . . . . . | 02 g.6990
gaactgcacttcggcagagttgaatgaatgaagacagacgcggagaactcctaa | ggagga c.-121
. . . . . . g.7050
gattggacaggctggactccccattgcttttctaaaaatcttggaaactttgtccttcat c.-61
. . . . . . | 03 g.7589
tgaattacgacactgtccacctttaatttcctcgaaaacgcctgtaactcggctgaag | cc c.-1
. . . . . . g.7649
ATGCCTTGTGTTCAGGCGCAGTATGGGTCCTCGCCTCAAGGAGCCAGCCCCGCTTCTCAG c.60
M P C V Q A Q Y G S S P Q G A S P A S Q p.20
. . . . . . g.7709
AGCTACAGTTACCACTCTTCGGGAGAATACAGCTCCGATTTCTTAACTCCAGAGTTTGTC c.120
S Y S Y H S S G E Y S S D F L T P E F V p.40
. . . . . . g.7769
AAGTTTAGCATGGACCTCACCAACACTGAAATCACTGCCACCACTTCTCTCCCCAGCTTC c.180
K F S M D L T N T E I T A T T S L P S F p.60
. . . . . . g.7829
AGTACCTTTATGGACAACTACAGCACAGGCTACGACGTCAAGCCACCTTGCTTGTACCAA c.240
S T F M D N Y S T G Y D V K P P C L Y Q p.80
. . . . . . g.7889
ATGCCCCTGTCCGGACAGCAGTCCTCCATTAAGGTAGAAGACATTCAGATGCACAACTAC c.300
M P L S G Q Q S S I K V E D I Q M H N Y p.100
. . . . . . g.7949
CAGCAACACAGCCACCTGCCCCCCCAGTCTGAGGAGATGATGCCGCACTCCGGGTCGGTT c.360
Q Q H S H L P P Q S E E M M P H S G S V p.120
. . . . . . g.8009
TACTACAAGCCCTCCTCGCCCCCGACGCCCACCACCCCGGGCTTCCAGGTGCAGCACAGC c.420
Y Y K P S S P P T P T T P G F Q V Q H S p.140
. . . . . . g.8069
CCCATGTGGGACGACCCGGGATCTCTCCACAACTTCCACCAGAACTACGTGGCCACTACG c.480
P M W D D P G S L H N F H Q N Y V A T T p.160
. . . . . . g.8129
CACATGATCGAGCAGAGGAAAACGCCAGTCTCCCGCCTCTCCCTCTTCTCCTTTAAGCAA c.540
H M I E Q R K T P V S R L S L F S F K Q p.180
. . . . . . g.8189
TCGCCCCCTGGCACCCCGGTGTCTAGTTGCCAGATGCGCTTCGACGGGCCCCTGCACGTC c.600
S P P G T P V S S C Q M R F D G P L H V p.200
. . . . . . g.8249
CCCATGAACCCGGAGCCCGCCGGCAGCCACCACGTGGTGGACGGGCAGACCTTCGCTGTG c.660
P M N P E P A G S H H V V D G Q T F A V p.220
. . . . . . g.8309
CCCAACCCCATTCGCAAGCCCGCGTCCATGGGCTTCCCGGGCCTGCAGATCGGCCACGCG c.720
P N P I R K P A S M G F P G L Q I G H A p.240
. . . . . . g.8369
TCTCAGCTGCTCGACACGCAGGTGCCCTCACCGCCGTCGCGGGGCTCCCCCTCCAACGAG c.780
S Q L L D T Q V P S P P S R G S P S N E p.260
. . . . . . g.8429
GGGCTGTGCGCTGTGTGTGGGGACAACGCGGCCTGCCAACACTACGGCGTGCGCACCTGT c.840
G L C A V C G D N A A C Q H Y G V R T C p.280
. . | 04 . . . . g.9278
GAGGGCTGCAAAGGCTTCTTTAAG | CGCACAGTGCAAAAAAATGCAAAATACGTGTGTTTA c.900
E G C K G F F K | R T V Q K N A K Y V C L p.300
. . . . . . g.9338
GCAAATAAAAACTGCCCAGTGGACAAGCGTCGCCGGAATCGCTGTCAGTACTGCCGATTT c.960
A N K N C P V D K R R R N R C Q Y C R F p.320
. . . | 05 . . . g.9787
CAGAAGTGCCTGGCTGTTGGGATGGTCAAAGAAG | TGGTTCGCACAGACAGTTTAAAAGGC c.1020
Q K C L A V G M V K E V | V R T D S L K G p.340
. . . . . . g.9847
CGGAGAGGTCGTTTGCCCTCGAAACCGAAGAGCCCACAGGAGCCCTCTCCCCCTTCGCCC c.1080
R R G R L P S K P K S P Q E P S P P S P p.360
. . . . . . g.9907
CCGGTGAGTCTGATCAGTGCCCTCGTCAGGGCCCATGTCGACTCCAACCCGGCTATGACC c.1140
P V S L I S A L V R A H V D S N P A M T p.380
. | 06 . . . . g.10897
AGCCTGGACTATTCCAGG | TTCCAGGCGAACCCTGACTATCAAATGAGTGGAGATGACACC c.1200
S L D Y S R | F Q A N P D Y Q M S G D D T p.400
. . . . . . g.10957
CAGCATATCCAGCAATTCTATGATCTCCTGACTGGCTCCATGGAGATCATCCGGGGCTGG c.1260
Q H I Q Q F Y D L L T G S M E I I R G W p.420
. . . . . . g.11017
GCAGAGAAGATCCCTGGCTTCGCAGACCTGCCCAAAGCCGACCAAGACCTGCTTTTTGAA c.1320
A E K I P G F A D L P K A D Q D L L F E p.440
. . . . | 07 . . g.11466
TCAGCTTTCTTAGAACTGTTTGTCCTTCGATTAGCATACAG | GTCCAACCCAGTGGAGGGT c.1380
S A F L E L F V L R L A Y R | S N P V E G p.460
. . . . . . g.11526
AAACTCATCTTTTGCAATGGGGTGGTCTTGCACAGGTTGCAATGCGTTCGTGGCTTTGGG c.1440
K L I F C N G V V L H R L Q C V R G F G p.480
. . . . . . g.11586
GAATGGATTGATTCCATTGTTGAATTCTCCTCCAACTTGCAGAATATGAACATCGACATT c.1500
E W I D S I V E F S S N L Q N M N I D I p.500
. . . . | 08 . . g.11795
TCTGCCTTCTCCTGCATTGCTGCCCTGGCTATGGTCACAG | AGAGACACGGGCTCAAGGAA c.1560
S A F S C I A A L A M V T E | R H G L K E p.520
. . . . . . g.11855
CCCAAGAGAGTGGAAGAACTGCAAAACAAGATTGTAAATTGTCTCAAAGACCACGTGACT c.1620
P K R V E E L Q N K I V N C L K D H V T p.540
. . . . . . g.11915
TTCAACAATGGGGGGTTGAACCGCCCCAATTATTTGTCCAAACTGTTGGGGAAGCTCCCA c.1680
F N N G G L N R P N Y L S K L L G K L P p.560
. . . . . . g.11975
GAACTTCGTACCCTTTGCACACAGGGGCTACAGCGCATTTTCTACCTGAAATTGGAAGAC c.1740
E L R T L C T Q G L Q R I F Y L K L E D p.580
. . . . . g.12032
TTGGTGCCACCGCCAGCAATAATTGACAAACTTTTCCTGGACACTTTACCTTTCTAA c.1797
L V P P P A I I D K L F L D T L P F X p.598
. . . . . . g.12092
gacctcctcccaagcacttcaaaggaactggaatgataatggaaactgtcaagagggggc c.*60
. . . . . . g.12152
aagtcacatgggcagagatagccgtgtgagcagtctcagctcaagctgccccccatttct c.*120
. . . . . . g.12212
gtaaccctcctagcccccttgatccctaaagaaaacaaacaaacaaacaaaaactgttgc c.*180
. . . . . . g.12272
tatttcctaacctgcaggcagaacctgaaagggcattttggctccggggcatcctggatt c.*240
. . . . . . g.12332
tagaacatggactacacacaatacagtggtataaactttttattctcagtttaaaaatca c.*300
. . . . . . g.12392
gtttgttgttcagaagaaagattgctataatgtataatgggaaatgtttggccatgcttg c.*360
. . . . . . g.12452
gttgttgcagttcagacaaatgtaacacacacacacatacacacacacacacacacacag c.*420
. . . . . . g.12512
agacacatcttaaggggacccacaagtattgccctttaacaagacttcaaagttttctgc c.*480
. . . . . . g.12572
tgtaaagaaagctgtaatatatagtaaaactaaatgttgcgtgggtggcatgagttgaag c.*540
. . . . . . g.12632
aaggcaaaggcttgtaaatttacccaatgcagtttggctttttaaattattttgtgccta c.*600
. . . . . . g.12692
tttatgaataaatattacaaattctaaaagataagtgtgtttgcaaaaaaaaagaaaata c.*660
. . . . . . g.12752
aatacataaaaaagggacaagcatgttgattctaggttgaaaatgttataggcacttgct c.*720
. . . . . . g.12812
acttcagtaatgtctatattatataaatagtatttcagacactatgtagtctgttagatt c.*780
. . . . . . g.12872
ttataaagattggtagttatctgagcttaaacattttctcaattgtaaaataggtgggca c.*840
. . . . . . g.12932
caagtattacacatcagaaaatcctgacaaaagggacacatagtgtttgtaacaccgtcc c.*900
. . . . . . g.12992
aacattccttgtttgtaagtgttgtatgtaccgttgatgttgataaaaagaaagtttata c.*960
. . . . . . g.13052
tcttgattattttgttgtctaaagctaaacaaaacttgcatgcagcagcttttgactgtt c.*1020
. . . . . . g.13112
tccagagtgcttataatatacataactccctggaaataactgagcactttgaattttttt c.*1080
. . . . . . g.13172
tatgtctaaaattgtcagttaatttattattttgtttgagtaagaattttaatattgcca c.*1140
. . . . . . g.13232
tattctgtagtatttttctttgtatatttctagtatggcacatgatatgagtcactgcct c.*1200
. . . . . . g.13292
ttttttctatggtgtatgacagttagagatgctgattttttttctgataaattctttctt c.*1260
. . . . . g.13344
tgagaaagacaattttaatgtttacaacaataaaccatgtaaatgaacagaa c.*1312
(downstream sequence)
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