(used for variant description)
(last modified February 4, 2023)
This file was created to facilitate the description of sequence variants on transcript NM_022072.3 in the NSUN3 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000003.11, covering NSUN3 transcript NM_022072.3.
(upstream sequence)
. . . . . g.5056
gagaatgaaagtggatgcccgcgaatcccggaagtcagactgtttttttcagttcc c.-61
. . . . . . g.5116
ctggaggctttttgatactgattcgcgtacacctgttgtttgaaagctctcagcgggaca c.-1
. | 02 . . . . . g.6474
ATGCTGACCCAG | CTGAAAGCAAAATCAGAGGGGAAGCTTGCAAAACAGATTTGCAAAGTT c.60
M L T Q | L K A K S E G K L A K Q I C K V p.20
. . . . . . g.6534
GTGTTGGATCATTTTGAAAAACAGTATTCCAAAGAACTCGGAGATGCCTGGAATACAGTA c.120
V L D H F E K Q Y S K E L G D A W N T V p.40
| 03 . . . . . . g.26154
AG | GGAGATACTAACATCTCCATCATGCTGGCAATATGCTGTCCTGCTTAACCGATTCAAT c.180
R | E I L T S P S C W Q Y A V L L N R F N p.60
. . . . . . g.26214
TATCCTTTTGAACTGGAAAAGGATTTACATTTGAAGGGCTATCACACACTCTCTCAGGGA c.240
Y P F E L E K D L H L K G Y H T L S Q G p.80
. . . . . . g.26274
TCTTTACCCAACTATCCTAAATCAGTGAAGTGTTACCTTAGCAGAACTCCGGGCCGAATC c.300
S L P N Y P K S V K C Y L S R T P G R I p.100
. . . . . . g.26334
CCTTCAGAAAGACACCAAATTGGAAACCTGAAAAAATATTATCTCCTAAATGCTGCTTCT c.360
P S E R H Q I G N L K K Y Y L L N A A S p.120
. . . . . . g.26394
CTTCTCCCAGTGTTGGCTCTGGAATTAAGGGATGGGGAGAAGGTTCTGGATCTCTGTGCT c.420
L L P V L A L E L R D G E K V L D L C A p.140
. . . . | 04 . . g.36143
GCTCCTGGAGGGAAATCAATAGCTCTGCTGCAGTGTGCTTGTCCAG | GTTATCTTCATTGT c.480
A P G G K S I A L L Q C A C P G | Y L H C p.160
. . . . . . g.36203
AATGAATATGATAGTCTGAGATTGAGGTGGCTAAGGCAGACGTTGGAATCTTTCATCCCA c.540
N E Y D S L R L R W L R Q T L E S F I P p.180
. . . . . . g.36263
CAGCCTTTGATAAATGTAATTAAAGTGTCTGAATTGGATGGCAGAAAAATGGGAGATGCC c.600
Q P L I N V I K V S E L D G R K M G D A p.200
. . | 05 . . . . g.37061
CAGCCTGAAATGTTTGACAAG | GTGTTAGTGGATGCTCCGTGTTCAAATGATCGAAGCTGG c.660
Q P E M F D K | V L V D A P C S N D R S W p.220
. . . . . . g.37121
TTGTTTTCTTCTGACTCTCAGAAGGCATCCTGTAGGATAAGTCAAAGGAGGAATTTGCCT c.720
L F S S D S Q K A S C R I S Q R R N L P p.240
. . | 06 . . . . g.68237
CTTCTACAGATAGAGCTGTTAAG | GTCTGCAATTAAGGCCTTACGTCCTGGAGGGATACTT c.780
L L Q I E L L R | S A I K A L R P G G I L p.260
. . . . . . g.68297
GTATACTCTACATGCACGCTTTCCAAGGCAGAAAATCAAGATGTGATCAGTGAAATTTTA c.840
V Y S T C T L S K A E N Q D V I S E I L p.280
. . . . . . g.68357
AACTCCCACGGTAACATCATGCCTATGGACATTAAAGGAATAGCAAGGACTTGCTCCCAC c.900
N S H G N I M P M D I K G I A R T C S H p.300
. . . . . . g.68417
GACTTCACATTTGCTCCCACTGGCCAGGAATGTGGGCTCTTAGTGATTCCAGATAAGGGC c.960
D F T F A P T G Q E C G L L V I P D K G p.320
. . . . . . g.68477
AAAGCCTGGGGCCCAATGTATGTAGCCAAATTGAAGAAATCATGGAGCACAGGAAAATGG c.1020
K A W G P M Y V A K L K K S W S T G K W p.340
g.68480
TGA c.1023
X p.340
. . . . . . g.68540
catgaatttgtaaactgtgtttatgtgttattatatttatatttctgaactcagtacatg c.*60
. . . . . . g.68600
ttaatatttaaataattatgcagtaactttctctgggtctgtttggaatcctatttagtt c.*120
. . . . . . g.68660
aatactttagcatcttagaatctaggcttgagaattgttcaggtgtatttttttcctaga c.*180
. . . . . . g.68720
aatatatctgtaacaatgatttaaggtggtgcagatggtgtttgttctatattataaatc c.*240
. . . . . g.68776
tgctgtctttgcttggcattttatagttaaattaattagaatatgtggttttatgc c.*296
(downstream sequence)
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