(used for variant description)
(last modified December 10, 2016)
This file was created to facilitate the description of sequence variants on transcript NM_016820.3 in the OGG1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_012106.1, covering OGG1 transcript NM_016820.3.
(upstream sequence)
. . . . g.5043
ctacttccggtggtgctgtggtctgcccctggagaacccagaa c.-301
. . . . . . g.5103
gaacacagctgtgcgcgcccacaggctctgggggcgggagaagataagtcgcaaggaggg c.-241
. . . . . . g.5163
ggcgggacctacacctcaggaaagccggagaattggggcacgaagcggggctttgatgac c.-181
. . . . . . g.5223
ccgcaaagggcgaggcatgcaggaggtggaggaattaagtgaaacagggaaggttgttaa c.-121
. . . . . . g.5283
acagcaccgtgtgggcgaggccttaagggtcgtggtccttgtctgggcggggtctttggg c.-61
. . . . . . g.5343
cgtcgacgaggcctggttctgggtaggcggggctactacggggcggtgcctgctgtggaa c.-1
. . . . . . g.5403
ATGCCTGCCCGCGCGCTTCTGCCCAGGCGCATGGGGCATCGTACTCTAGCCTCCACTCCT c.60
M P A R A L L P R R M G H R T L A S T P p.20
. . . . . . g.5463
GCCCTGTGGGCCTCCATCCCGTGCCCTCGCTCTGAGCTGCGCCTGGACCTGGTTCTGCCT c.120
A L W A S I P C P R S E L R L D L V L P p.40
. | 02. . . . . g.6044
TCTGGACAATCTTTCCG | GTGGAGGGAGCAAAGTCCTGCACACTGGAGTGGTGTACTAGCG c.180
S G Q S F R | W R E Q S P A H W S G V L A p.60
. . . . . . g.6104
GATCAAGTATGGACACTGACTCAGACTGAGGAGCAGCTCCACTGCACTGTGTACCGAGGA c.240
D Q V W T L T Q T E E Q L H C T V Y R G p.80
. . . . . . g.6164
GACAAGAGCCAGGCTAGCAGGCCCACACCAGACGAGCTGGAGGCCGTGCGCAAGTACTTC c.300
D K S Q A S R P T P D E L E A V R K Y F p.100
. . . . . . g.6224
CAGCTAGATGTTACCCTGGCTCAACTGTATCACCACTGGGGTTCCGTGGACTCCCACTTC c.360
Q L D V T L A Q L Y H H W G S V D S H F p.120
. . | 03 . . . . g.6861
CAAGAGGTGGCTCAGAAATTCCAAG | GTGTGCGACTGCTGCGACAAGACCCCATCGAATGC c.420
Q E V A Q K F Q G | V R L L R Q D P I E C p.140
. . . . . . g.6921
CTTTTCTCTTTTATCTGTTCCTCCAACAACAACATCGCCCGCATCACTGGCATGGTGGAG c.480
L F S F I C S S N N N I A R I T G M V E p.160
. . . . . . g.6981
CGGCTGTGCCAGGCTTTTGGACCTCGGCTCATCCAGCTTGATGATGTCACCTACCATGGC c.540
R L C Q A F G P R L I Q L D D V T Y H G p.180
. . | 04 . . . . g.9795
TTCCCCAGCCTGCAGGCCCTGGCTG | GGCCAGAGGTGGAGGCTCATCTCAGGAAGCTGGGC c.600
F P S L Q A L A G | P E V E A H L R K L G p.200
. . . . . . g.9855
CTGGGCTATCGTGCCCGTTACGTGAGTGCCAGTGCCCGAGCCATCCTGGAAGAACAGGGC c.660
L G Y R A R Y V S A S A R A I L E E Q G p.220
. . . . . . g.9915
GGGCTAGCCTGGCTGCAGCAGCTACGAGAGTCCTCATATGAGGAGGCCCACAAGGCCCTC c.720
G L A W L Q Q L R E S S Y E E A H K A L p.240
. . | 05. . . . g.11560
TGCATCCTGCCTGGAGTGGGCACCAAG | GTGGCTGACTGCATCTGCCTGATGGCCCTAGAC c.780
C I L P G V G T K | V A D C I C L M A L D p.260
. . . . . . g.11620
AAGCCCCAGGCTGTGCCCGTGGATGTCCATATGTGGCACATTGCCCAACGTGACTACAGC c.840
K P Q A V P V D V H M W H I A Q R D Y S p.280
. . . . . | 06 g.11825
TGGCACCCTACCACGTCCCAGGCGAAGGGACCGAGCCCCCAGACCAACAAGGAACTGG | GA c.900
W H P T T S Q A K G P S P Q T N K E L G | p.300
. . . . | 07 . g.12112
AACTTTTTCCGGAGCCTGTGGGGACCTTATGCTGGCTGGGCCCAAGCG | ACTCCACCCTCC c.960
N F F R S L W G P Y A G W A Q A | T P P S p.320
. . . . . . g.12172
TACAGGTGCTGTTCAGTGCCGACCTGCGCCAATCCCGCCATGCTCAGGAGCCACCAGCAA c.1020
Y R C C S V P T C A N P A M L R S H Q Q p.340
. . . . . . g.12232
AGCGCAGAAAGGGTTCCAAAGGGCCGGAAGGCTAGATGGGGCACCCTGGACAAAGAAATT c.1080
S A E R V P K G R K A R W G T L D K E I p.360
. . . . . . g.12292
CCCCAAGCACCTTCCCCTCCATTCCCCACTTCTCTCTCCCCATCCCCACCCAGTCTCATG c.1140
P Q A P S P P F P T S L S P S P P S L M p.380
. . . . . . g.12352
TTGGGGAGGGGCCTCCCTGTGACTACCTCAAAGGCCAGGCACCCCCAAATCAAGCAGTCA c.1200
L G R G L P V T T S K A R H P Q I K Q S p.400
. . . g.12385
GTTTGCACAACAAGATGGGGTGGGGGATATTGA c.1233
V C T T R W G G G Y X p.410
. . . . . . g.12445
gggagacagcgctaaggatggttttatcttccctttattacaagaaggaacaataaaata c.*60
. g.12464
gaaacatttgtatggaaaa c.*79
(downstream sequence)
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