(used for variant description)
(last modified March 31, 2016)
This file was created to facilitate the description of sequence variants on transcript NM_001008503.1 in the OPRM1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_021208.1, covering OPRM1 transcript NM_001008503.1.
(upstream sequence)
. . . . . g.33869
gatgagcctctgtgaactactaaggtgggagggggctatacgcagaggagaatgtca c.-181
. . . . . . g.33929
gatgctcagctcggtcccctccgcctgacgctcctctctgtctcagccaggactggtttc c.-121
. . . . . . g.33989
tgtaagaaacagcaggagctgtggcagcggcgaaaggaagcggctgaggcgcttggaacc c.-61
. . . . . . g.34049
cgaaaagtctcggtgctcctggctacctcgcacagcggtgcccgcccggccgtcagtacc c.-1
. . . . . . g.34109
ATGGACAGCAGCGCTGCCCCCACGAACGCCAGCAATTGCACTGATGCCTTGGCGTACTCA c.60
M D S S A A P T N A S N C T D A L A Y S p.20
. . . . . . g.34169
AGTTGCTCCCCAGCACCCAGCCCCGGTTCCTGGGTCAACTTGTCCCACTTAGATGGCAAC c.120
S C S P A P S P G S W V N L S H L D G N p.40
. . . . . . g.34229
CTGTCCGACCCATGCGGTCCGAACCGCACCGACCTGGGCGGGAGAGACAGCCTGTGCCCT c.180
L S D P C G P N R T D L G G R D S L C P p.60
. . . . . . g.34289
CCGACCGGCAGTCCCTCCATGATCACGGCCATCACGATCATGGCCCTCTACTCCATCGTG c.240
P T G S P S M I T A I T I M A L Y S I V p.80
. . . . . | 02 . g.84340
TGCGTGGTGGGGCTCTTCGGAAACTTCCTGGTCATGTATGTGATTGTCAG | ATACACCAAG c.300
C V V G L F G N F L V M Y V I V R | Y T K p.100
. . . . . . g.84400
ATGAAGACTGCCACCAACATCTACATTTTCAACCTTGCTCTGGCAGATGCCTTAGCCACC c.360
M K T A T N I Y I F N L A L A D A L A T p.120
. . . . . . g.84460
AGTACCCTGCCCTTCCAGAGTGTGAATTACCTAATGGGAACATGGCCATTTGGAACCATC c.420
S T L P F Q S V N Y L M G T W P F G T I p.140
. . . . . . g.84520
CTTTGCAAGATAGTGATCTCCATAGATTACTATAACATGTTCACCAGCATATTCACCCTC c.480
L C K I V I S I D Y Y N M F T S I F T L p.160
. . . . . . g.84580
TGCACCATGAGTGTTGATCGATACATTGCAGTCTGCCACCCTGTCAAGGCCTTAGATTTC c.540
C T M S V D R Y I A V C H P V K A L D F p.180
. . . . . . g.84640
CGTACTCCCCGAAATGCCAAAATTATCAATGTCTGCAACTGGATCCTCTCTTCAGCCATT c.600
R T P R N A K I I N V C N W I L S S A I p.200
. . . . | 03 . . g.85473
GGTCTTCCTGTAATGTTCATGGCTACAACAAAATACAGGCAAG | GTTCCATAGATTGTACA c.660
G L P V M F M A T T K Y R Q G | S I D C T p.220
. . . . . . g.85533
CTAACATTCTCTCATCCAACCTGGTACTGGGAAAACCTGCTGAAGATCTGTGTTTTCATC c.720
L T F S H P T W Y W E N L L K I C V F I p.240
. . . . . . g.85593
TTCGCCTTCATTATGCCAGTGCTCATCATTACCGTGTGCTATGGACTGATGATCTTGCGC c.780
F A F I M P V L I I T V C Y G L M I L R p.260
. . . . . . g.85653
CTCAAGAGTGTCCGCATGCTCTCTGGCTCCAAAGAAAAGGACAGGAATCTTCGAAGGATC c.840
L K S V R M L S G S K E K D R N L R R I p.280
. . . . . . g.85713
ACCAGGATGGTGCTGGTGGTGGTGGCTGTGTTCATCGTCTGCTGGACTCCCATTCACATT c.900
T R M V L V V V A V F I V C W T P I H I p.300
. . . . . . g.85773
TACGTCATCATTAAAGCCTTGGTTACAATCCCAGAAACTACGTTCCAGACTGTTTCTTGG c.960
Y V I I K A L V T I P E T T F Q T V S W p.320
. . . . . . g.85833
CACTTCTGCATTGCTCTAGGTTACACAAACAGCTGCCTCAACCCAGTCCTTTATGCATTT c.1020
H F C I A L G Y T N S C L N P V L Y A F p.340
. . . . . . g.85893
CTGGATGAAAACTTCAAACGATGCTTCAGAGAGTTCTGTATCCCAACCTCTTCCAACATT c.1080
L D E N F K R C F R E F C I P T S S N I p.360
. . . . . . g.85953
GAGCAACAAAACTCCACTCGAATTCGTCAGAACACTAGAGACCACCCCTCCACGGCCAAT c.1140
E Q Q N S T R I R Q N T R D H P S T A N p.380
. . | 04 . . . . g.241232
ACAGTGGATAGAACTAATCATCAG | CCACCCTTGGCAGTCAGCATGGCCCAGATCTTTACA c.1200
T V D R T N H Q | P P L A V S M A Q I F T p.400
. . . . . g.241289
CGATATCCTCCTCCGACTCATCGTGAGAAAACCTGCAATGATTACATGAAGAGGTAG c.1257
R Y P P P T H R E K T C N D Y M K R X p.418
. . . . . . g.241349
ataatgtattaccctgatttggtaggtaaagtattatcctgatttatgtgacagagtgaa c.*60
. . g.241371
aggcaacttttaattgttaacc c.*82
(downstream sequence)
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