(used for variant description)
(last modified January 28, 2021)
This file was created to facilitate the description of sequence variants on transcript NM_021620.3 in the PRDM13 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000006.11, covering PRDM13 transcript NM_021620.3.
(upstream sequence)
. . g.5021
ccatgtgaccctctcgggtgg c.-241
. . . . . . g.5081
gactctgcagctgcttcgcagcgcaactctctcaccaaactccgcgcccttgcgctagcg c.-181
. . . . . . g.5141
gtgccaaaaggctcccgccccgattgaaaaggcgcagtgcatgcccgcccgcgtcactcc c.-121
. . . . . . g.5201
gcgggcggaggacgcacgtcggggcgcggctctctggctagcgcgcagctccagctctgt c.-61
. . . . . . g.5261
cactcgcgcccttccaaggacctggagcacccgagcgcctgcctggtggcggcggcaaca c.-1
. . . . . . g.5321
ATGCACGGAGCCGCCAGAGCGCCAGCCACCAGCGTGAGTGCCGACTGCTGCATCCCGGCC c.60
M H G A A R A P A T S V S A D C C I P A p.20
. . . . . . g.5381
GGCTTGCGCCTCGGACCGGTGCCTGGTACCTTCAAGCTGGGCAAGTACCTGTCAGACCGC c.120
G L R L G P V P G T F K L G K Y L S D R p.40
. . | 02 . . . . g.7003
AGGGAGCCCGGGCCTAAGAAAAAG | GTGCGCATGGTGAGAGGGGAGCTGGTGGACGAGTCG c.180
R E P G P K K K | V R M V R G E L V D E S p.60
. . . . . . g.7063
GGGGGCTCCCCTCTGGAGTGGATAGGGTTAATCCGGGCAGCCAGAAACTCCCAGGAACAG c.240
G G S P L E W I G L I R A A R N S Q E Q p.80
. . . | 03 . . . g.7437
ACTCTGGAAGCTATTGCAGACTTACCCGGAGGACAG | ATCTTCTACCGAGCATTGCGAGAC c.300
T L E A I A D L P G G Q | I F Y R A L R D p.100
. . . . . . g.7497
GTCCAGCCAGGGGAGGAGCTGACAGTGTGGTATTCTAACTCCTTGGCTCAGTGGTTCGAC c.360
V Q P G E E L T V W Y S N S L A Q W F D p.120
. . . | 04. . . g.11282
ATCCCCACCACAGCGACTCCGACTCACGACGAGAAAG | GGGAGGAGCGCTACATCTGCTGG c.420
I P T T A T P T H D E K G | E E R Y I C W p.140
. . . . . . g.11342
TACTGCTGGAGGACGTTTAGATACCCCAACAGCCTTAAGGCACACCTGCGTTTCCACTGC c.480
Y C W R T F R Y P N S L K A H L R F H C p.160
. . . . . . g.11402
GTGTTCAGCGGCGGTGGAGGCGGCGCCTTCCTGCACCACGAACACGCGGCTCGCCAAGGC c.540
V F S G G G G G A F L H H E H A A R Q G p.180
. . . . . . g.11462
GCCGTCCCAGCGGCTGATGGCCTCGGTCTCTCCCCAAAACCCCCGGCGCCCGATTTCGCC c.600
A V P A A D G L G L S P K P P A P D F A p.200
. . . . . . g.11522
GCGCCTTCCCAGGCAGGAACTTTGCGACCCCACCCCCTGGGCCCGCCACCAGTTCAGGCC c.660
A P S Q A G T L R P H P L G P P P V Q A p.220
. . . . . . g.11582
TGCGGTGCGCGGGAGGGCATCAAGCGCGAGGCCTCTTCCGCGCCCTCGGCCACCTCGCCG c.720
C G A R E G I K R E A S S A P S A T S P p.240
. . . . . . g.11642
ACCCCAGGCAAGTGGGGGCAGCCCAAGAAGGGCAAGGAGCAGCTGGACCGTGCCCTGGAC c.780
T P G K W G Q P K K G K E Q L D R A L D p.260
. . . . . . g.11702
ATGAGCGGAGCCGCCCGAGGACAAGGGCACTTCCTCGGCATCGTGGGCGGCTCCTCGGCG c.840
M S G A A R G Q G H F L G I V G G S S A p.280
. . . . . . g.11762
GGGGTCGGCAGCCTGGCTTTCTACCCCGGCGTGCGCTCAGCTTTCAAGCCCGCCGGCCTA c.900
G V G S L A F Y P G V R S A F K P A G L p.300
. . . . . . g.11822
GCGAGGGCGGCGGCGGCCGCTCACGGCGACCCCTACCGGGAGGAGAGCAGCAGCAAGCAA c.960
A R A A A A A H G D P Y R E E S S S K Q p.320
. . . . . . g.11882
GGAGCCGGCCTCGCTTTGGGCAGGCTGCTGGGCGGGGGCCGGGCGTGCGGGCGCCCCGGG c.1020
G A G L A L G R L L G G G R A C G R P G p.340
. . . . . . g.11942
AGCGGGGAGAACTCGGCGGCGGGCGGCGCGGGTCACCACCATCACCACCACGCGCACCAC c.1080
S G E N S A A G G A G H H H H H H A H H p.360
. . . . . . g.12002
CACCACCATCCCAAGTGCCTGCTCGCTGGGGACCCGCCGCCGCCGCCGCCGCCTGGCCTG c.1140
H H H P K C L L A G D P P P P P P P G L p.380
. . . . . . g.12062
CCCTGCTCTGGGGCCCTGCGCGGCTTCCCTCTGCTCTCCGTCCCCCCGGAAGAGGCGTCC c.1200
P C S G A L R G F P L L S V P P E E A S p.400
. . . . . . g.12122
GCCTTCAAGCACGTGGAGCGCGCCCCGCCCGCAGCCGCCGCGCTGCCAGGAGCGCGTTAT c.1260
A F K H V E R A P P A A A A L P G A R Y p.420
. . . . . . g.12182
GCGCAGCTGCCCCCTGCGCCGGGGTTGCCCCTCGAGCGCTGCGCGCTGCCGCCCCTCGAC c.1320
A Q L P P A P G L P L E R C A L P P L D p.440
. . . . . . g.12242
CCGGGCGGTCTCAAAGCCTATCCGGGTGGTGAGTGCAGCCACCTGCCCGCCGTCATGCCG c.1380
P G G L K A Y P G G E C S H L P A V M P p.460
. . . . . . g.12302
GCCTTTACAGTCTACAACGGGGAGCTGCTCTACGGCTCACCGGCCACCACCGCTTATTAC c.1440
A F T V Y N G E L L Y G S P A T T A Y Y p.480
. . . . . . g.12362
CCGCTCAAATTGCACTTCGGCGGGCTGCTGAAGTATCCGGAGTCCATCTCCTACTTCAGC c.1500
P L K L H F G G L L K Y P E S I S Y F S p.500
. . . . . . g.12422
GGGCCTGCAGCGGCCGCCCTAAGCCCCGCCGAGCTGGGGTCGCTGGCCAGCATCGACCGA c.1560
G P A A A A L S P A E L G S L A S I D R p.520
. . . . . . g.12482
GAGATCGCCATGCACAATCAGCAGCTGTCCGAGATGGCTGCCGGGAAGGGTCGCGGACGC c.1620
E I A M H N Q Q L S E M A A G K G R G R p.540
. . . . . . g.12542
CTGGACTCGGGGACGTTGCCACCGGCCGTCGCGGCGGCGGGAGGCACCGGGGGCGGCGGC c.1680
L D S G T L P P A V A A A G G T G G G G p.560
. . . . . . g.12602
AGCGGAGGCAGCGGCGCAGGTAAGCCCAAGACCGGCCACCTGTGCCTCTACTGTGGCAAG c.1740
S G G S G A G K P K T G H L C L Y C G K p.580
. . . . . . g.12662
CTGTACTCGCGCAAGTATGGGCTCAAGATCCACATGCGGACGCACACGGGCTACAAGCCA c.1800
L Y S R K Y G L K I H M R T H T G Y K P p.600
. . . . . . g.12722
CTCAAGTGCAAAGTCTGTCTGCGGCCCTTCGGCGACCCCAGCAATCTCAACAAGCACATC c.1860
L K C K V C L R P F G D P S N L N K H I p.620
. . . . . . g.12782
CGGCTGCACGCCGAGGGCAATACGCCCTACCGCTGCGAGTTCTGCGGCAAGGTACTTGTG c.1920
R L H A E G N T P Y R C E F C G K V L V p.640
. . . . . . g.12842
CGCCGCCGGGACCTGGAGCGACATGTCAAGTCCCGCCACCCTGGCCAGAGTCTGCTCGCC c.1980
R R R D L E R H V K S R H P G Q S L L A p.660
. . . . . . g.12902
AAAGCGGGCGACGGCCCGGGTGCCGAGCCCGGCTATCCCCCGGAGCCTGGGGATCCCAAG c.2040
K A G D G P G A E P G Y P P E P G D P K p.680
. . . . . . g.12962
AGCGACGACAGTGACGTGGACGTCTGCTTCACAGACGACCAGAGCGACCCCGAGGTTGGG c.2100
S D D S D V D V C F T D D Q S D P E V G p.700
. . g.12986
GGCGGCGGGGAGCGCGACTTGTAA c.2124
G G G E R D L X p.707
. . . . . . g.13046
cgagtcttcccgggaaggggcggggtgaggacagagaggagtcgagggtttattctcgca c.*60
. . . . . . g.13106
gtagaggaactcctggtggtgggaagagggacccaatggacaaaaccgtttttgtttttg c.*120
. . . . . . g.13166
agagggcgccagatttgaaacagtgagaggtcccacatctggtgctgaaactcagagcaa c.*180
. . . . . . g.13226
cagttcagaggtggcgtaaatctggccacctggagagctcgagtgccaccagtacctccg c.*240
. . . . . . g.13286
caccccgggcctctggacttcttggatgagctcaccctgaaccgcccaggcggtctgctc c.*300
. . . . . . g.13346
ttggtgttcagaatcacatcaatgcgaacgtcacagcgccttcgagggcgcagattttaa c.*360
. . . . . . g.13406
ctgccacgtatttttaagttgtacttttctgtggaggaaattgtgccttttgaaacgacg c.*420
. . . . . . g.13466
ttttgtgtgtgtatttcacgttagcatttcattgcataggcaaaacactagtcacaattg c.*480
. . . . . . g.13526
ggtagatgtgacatccatatacttgtttacattttatctgttctcatgtcaaagactact c.*540
. . . . . . g.13586
ccttgccccattgaatatatagtggtagcaggtgtacaaattggtcaagttgcaattatt c.*600
. . . . . . g.13646
tatgagaaaataatgataaatgtaaaatatctaaagcatgaatctaagagcacgcaatat c.*660
. . . . . . g.13706
ataattttaaagaaaatattctatttggtagaatacaaatgtggtgtgtgttgttttata c.*720
. . . . . . g.13766
atgactgctgtacagtgggtatagtattttggttttggttccagattgtgcaatctttaa c.*780
. . . g.13805
gaaaaataaagatacaaacgagagttttgttcacttagt c.*819
(downstream sequence)
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