(used for variant description)
(last modified October 27, 2021)
This file was created to facilitate the description of sequence variants on transcript NM_002843.3 in the PTPRJ gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000011.9, covering PTPRJ transcript NM_002843.3.
(upstream sequence)
. . . . . g.5055
cagccccagccgcatgacgcgcggaggaggcagcgggagcagccgcgggagccgg c.-301
. . . . . . g.5115
gaccgggtagccgcgcgctgggggtgggcgccgctcgctccgccccgcgaagcccctgcg c.-241
. . . . . . g.5175
cgctcagggacgcggcccccccgcggcagccgcgctaggctccggcgtgtggccgcggcc c.-181
. . . . . . g.5235
gccgccgccgctgccatgtctccggggaagcccggggcgggcggagcggggacgaggcgg c.-121
. . . . . . g.5295
accggctggcggaggaggaggcgaaggagacggcaggaggcggcgacgacggtgcccggg c.-61
. . . . . . g.5355
ctcgggcgcacggcggggcccgattcgcgcgtccggggcacgttccagggcgcgcggggc c.-1
. . . . . . g.5415
ATGAAGCCGGCGGCGCGGGAGGCGCGGCTGCCTCCGCGCTCGCCCGGGCTGCGCTGGGCG c.60
M K P A A R E A R L P P R S P G L R W A p.20
. . . | 02 . . | 03 . g.137194
CTGCCGCTGCTGCTGCTGCTGCTGCGCCTGGGCCAG | ATCCTGTGCGCAGGTGGCA | CCCCT c.120
L P L L L L L L R L G Q | I L C A G G T | P p.40
. . . . . . g.137254
AGTCCAATTCCTGACCCTTCAGTAGCAACTGTTGCCACAGGGGAAAATGGCATAACGCAG c.180
S P I P D P S V A T V A T G E N G I T Q p.60
. . . . . . g.137314
ATCAGCAGTACAGCAGAATCCTTTCATAAACAGAATGGAACTGGAACACCTCAGGTGGAA c.240
I S S T A E S F H K Q N G T G T P Q V E p.80
. . . . . . g.137374
ACAAACACCAGTGAGGATGGTGAAAGCTCTGGAGCCAACGATAGTTTAAGAACACCTGAA c.300
T N T S E D G E S S G A N D S L R T P E p.100
. . . . . | 04 . g.145453
CAAGGATCTAATGGGACTGATGGGGCATCTCAAAAAACTCCCAGTAGCACTG | GGCCCAGT c.360
Q G S N G T D G A S Q K T P S S T G | P S p.120
. . . . . . g.145513
CCTGTGTTTGACATTAAAGCTGTTTCCATCAGTCCAACCAATGTGATCTTAACTTGGAAA c.420
P V F D I K A V S I S P T N V I L T W K p.140
. . . . . . g.145573
AGTAATGACACAGCTGCTTCTGAGTACAAGTATGTAGTAAAGCATAAGATGGAAAATGAG c.480
S N D T A A S E Y K Y V V K H K M E N E p.160
. . . . . . g.145633
AAGACAATTACTGTTGTGCATCAACCATGGTGTAACATCACAGGCTTACGTCCAGCGACT c.540
K T I T V V H Q P W C N I T G L R P A T p.180
. . . . . . g.145693
TCATATGTATTCTCCATCACTCCAGGAATAGGCAATGAGACTTGGGGAGATCCCAGAGTC c.600
S Y V F S I T P G I G N E T W G D P R V p.200
. | 05 . . . . . g.148099
ATAAAAGTCATCACAG | AGCCGATCCCAGTTTCTGATCTCCGTGTTGCCCTCACGGGTGTG c.660
I K V I T E | P I P V S D L R V A L T G V p.220
. . . . . . g.148159
AGGAAGGCTGCTCTCTCCTGGAGCAATGGCAATGGCACTGCCTCCTGCCGGGTTCTTCTT c.720
R K A A L S W S N G N G T A S C R V L L p.240
. . . . . . g.148219
GAAAGCATTGGAAGCCATGAGGAGTTGACTCAAGACTCAAGACTTCAGGTCAATATCTCG c.780
E S I G S H E E L T Q D S R L Q V N I S p.260
. . . . . . g.148279
GGCCTGAAGCCAGGGGTTCAATACAACATCAACCCGTATCTTCTACAATCAAATAAGACA c.840
G L K P G V Q Y N I N P Y L L Q S N K T p.280
. . . | 06 . . . g.149436
AAGGGAGACCCCTTGGGCACAGAAGGTGGCTTGG | ATGCCAGCAATACAGAGAGAAGCCGG c.900
K G D P L G T E G G L D | A S N T E R S R p.300
. . . . . . g.149496
GCAGGGAGCCCCACCGCCCCTGTGCATGATGAGTCCCTCGTGGGACCTGTGGACCCATCC c.960
A G S P T A P V H D E S L V G P V D P S p.320
. . . . . . g.149556
TCCGGCCAGCAGTCCCGAGACACGGAAGTCCTGCTTGTCGGGTTAGAGCCTGGCACCCGA c.1020
S G Q Q S R D T E V L L V G L E P G T R p.340
. . . . . . g.149616
TACAATGCCACCGTTTATTCCCAAGCAGCGAATGGCACAGAAGGACAGCCCCAGGCCATA c.1080
Y N A T V Y S Q A A N G T E G Q P Q A I p.360
. | 07 . . . . . g.152269
GAGTTCAGGACAA | ATGCTATTCAGGTTTTTGACGTCACCGCTGTGAACATCAGTGCCACA c.1140
E F R T N | A I Q V F D V T A V N I S A T p.380
. . . . . . g.152329
AGCCTGACCCTGATCTGGAAAGTCAGCGATAACGAGTCGTCATCTAACTATACCTACAAG c.1200
S L T L I W K V S D N E S S S N Y T Y K p.400
. . . . . . g.152389
ATACATGTGGCGGGGGAGACAGATTCTTCCAATCTCAACGTCAGTGAGCCTCGCGCTGTC c.1260
I H V A G E T D S S N L N V S E P R A V p.420
. . . . . . g.152449
ATCCCCGGACTCCGCTCCAGCACCTTCTACAACATCACAGTGTGTCCTGTCCTAGGTGAC c.1320
I P G L R S S T F Y N I T V C P V L G D p.440
. . . | 08. . . g.154924
ATCGAGGGCACGCCGGGCTTCCTCCAAGTGCACACCC | CCCCTGTTCCAGTTTCTGACTTC c.1380
I E G T P G F L Q V H T P | P V P V S D F p.460
. . . . . . g.154984
CGAGTGACAGTGGTCAGCACGACGGAGATCGGCTTAGCATGGAGCAGCCATGATGCAGAA c.1440
R V T V V S T T E I G L A W S S H D A E p.480
. . . . . . g.155044
TCATTTCAGATGCATATCACACAGGAGGGAGCTGGCAATTCTCGGGTAGAAATAACCACC c.1500
S F Q M H I T Q E G A G N S R V E I T T p.500
. . . . . . g.155104
AACCAAAGTATTATCATTGGTGGCTTGTTCCCTGGAACCAAGTATTGCTTTGAAATAGTT c.1560
N Q S I I I G G L F P G T K Y C F E I V p.520
. . . . . | 09 . g.160486
CCAAAAGGACCAAATGGGACTGAAGGGGCATCTCGGACAGTTTGCAATAGAACTG | TTCCC c.1620
P K G P N G T E G A S R T V C N R T V | P p.540
. . . . . . g.160546
AGTGCAGTGTTTGACATCCACGTGGTCTACGTCACCACCACGGAGATGTGGCTGGACTGG c.1680
S A V F D I H V V Y V T T T E M W L D W p.560
. . . . . . g.160606
AAGAGCCCTGACGGTGCTTCCGAGTATGTCTACCATTTAGTCATAGAGTCCAAGCATGGC c.1740
K S P D G A S E Y V Y H L V I E S K H G p.580
. . . . . . g.160666
TCTAACCACACAAGCACGTATGACAAAGCGATTACTCTCCAGGGCCTGATTCCGGGCACC c.1800
S N H T S T Y D K A I T L Q G L I P G T p.600
. . . . . . g.160726
TTATATAACATCACCATCTCTCCAGAAGTGGACCACGTCTGGGGGGACCCCAACTCCACT c.1860
L Y N I T I S P E V D H V W G D P N S T p.620
. | 10 . . . . . g.161492
GCACAGTACACAC | GGCCCAGCAATGTGTCCAACATTGATGTAAGTACCAACACCACAGCA c.1920
A Q Y T R | P S N V S N I D V S T N T T A p.640
. . . . . . g.161552
GCAACTTTAAGTTGGCAGAACTTTGATGACGCCTCTCCCACGTACTCCTACTGCCTTCTT c.1980
A T L S W Q N F D D A S P T Y S Y C L L p.660
. . . . . . g.161612
ATTGAGAAGGCTGGAAATTCCAGCAACGCAACACAAGTAGTCACGGACATTGGAATTACT c.2040
I E K A G N S S N A T Q V V T D I G I T p.680
. . . . . . g.161672
GACGCTACAGTCACTGAATTAATACCTGGCTCATCATACACAGTGGAGATCTTTGCACAA c.2100
D A T V T E L I P G S S Y T V E I F A Q p.700
. . . . . | 11 . g.163936
GTAGGGGATGGGATCAAGTCACTGGAACCTGGCCGGAAGTCATTCTGTACAG | ATCCTGCG c.2160
V G D G I K S L E P G R K S F C T D | P A p.720
. . . . . . g.163996
TCCATGGCCTCCTTCGACTGCGAAGTGGTCCCCAAAGAGCCAGCCCTGGTTCTCAAATGG c.2220
S M A S F D C E V V P K E P A L V L K W p.740
. . . . . . g.164056
ACCTGCCCTCCTGGCGCCAATGCAGGCTTTGAGCTGGAGGTCAGCAGTGGAGCCTGGAAC c.2280
T C P P G A N A G F E L E V S S G A W N p.760
. . . . . . g.164116
AATGCGACCCACCTGGAGAGCTGCTCCTCTGAGAATGGCACTGAGTATAGAACGGAAGTC c.2340
N A T H L E S C S S E N G T E Y R T E V p.780
. . . . . . g.164176
ACGTATTTGAATTTTTCTACCTCGTACAACATCAGCATCACCACTGTGTCCTGTGGAAAG c.2400
T Y L N F S T S Y N I S I T T V S C G K p.800
. . . . | 12 . . g.167378
ATGGCAGCCCCCACCCGGAACACCTGCACTACTGGCATCACAG | ATCCCCCTCCTCCAGAT c.2460
M A A P T R N T C T T G I T D | P P P P D p.820
. . . . . . g.167438
GGATCCCCTAATATTACATCTGTCAGTCACAATTCAGTAAAGGTCAAGTTCAGTGGATTT c.2520
G S P N I T S V S H N S V K V K F S G F p.840
. . . . . | 13 . g.169122
GAAGCCAGCCACGGACCCATCAAAGCCTATGCTGTCATTCTCACCACCGGGGAAG | CTGGT c.2580
E A S H G P I K A Y A V I L T T G E A | G p.860
. . . . . . g.169182
CACCCTTCTGCAGATGTCCTGAAATACACGTATGAGGATTTCAAAAAGGGAGCCTCAGAT c.2640
H P S A D V L K Y T Y E D F K K G A S D p.880
. . . . . . g.169242
ACTTATGTGACATACCTCATAAGAACAGAAGAAAAGGGACGTTCTCAGAGCTTGTCTGAA c.2700
T Y V T Y L I R T E E K G R S Q S L S E p.900
. . . . . . g.169302
GTTTTGAAATATGAAATTGACGTTGGGAATGAGTCAACCACACTTGGTTATTACAATGGG c.2760
V L K Y E I D V G N E S T T L G Y Y N G p.920
. . | 14 . . . . g.169476
AAGCTGGAACCTCTGGGCTCCTACCG | GGCTTGTGTGGCTGGCTTCACCAACATTACCTTC c.2820
K L E P L G S Y R | A C V A G F T N I T F p.940
. . . . . . g.169536
CACCCTCAAAACAAGGGGCTCATTGATGGGGCTGAGAGCTATGTGTCCTTCAGTCGCTAC c.2880
H P Q N K G L I D G A E S Y V S F S R Y p.960
. . . | 15 . . . g.171347
TCAGATGCTGTTTCCTTGCCCCAGGATCCAG | GTGTCATCTGTGGAGCGGTTTTTGGCTGT c.2940
S D A V S L P Q D P G | V I C G A V F G C p.980
. . . . . | 16 g.173890
ATCTTTGGTGCCCTGGTTATTGTGACTGTGGGAGGCTTCATCTTCTGGAGAAAGAAGAG | G c.3000
I F G A L V I V T V G G F I F W R K K R | p.1000
. . . . | 17 . | 18 . g.174548
AAAGATGCAAAGAATAATGAAGTGTCCTTTTCTCAAATTAA | ACCTAAAAA | ATCTAAGTTA c.3060
K D A K N N E V S F S Q I K | P K K | S K L p.1020
. . . . . . g.174608
ATCAGAGTGGAGAATTTTGAGGCCTACTTCAAGAAGCAGCAAGCTGACTCCAACTGTGGG c.3120
I R V E N F E A Y F K K Q Q A D S N C G p.1040
. | 19 . . . . g.178280
TTCGCAGAGGAATACGAA | GATCTGAAGCTTGTTGGAATTAGTCAACCTAAATATGCAGCA c.3180
F A E E Y E | D L K L V G I S Q P K Y A A p.1060
. . . . | 20 . g.180254
GAACTGGCTGAGAATAGAGGAAAGAATCGCTATAATAATGTTCTGCCCT | ATGATATTTCC c.3240
E L A E N R G K N R Y N N V L P Y | D I S p.1080
. . . . . . g.180314
CGTGTCAAACTTTCGGTCCAGACCCATTCAACGGATGACTACATCAATGCCAACTACATG c.3300
R V K L S V Q T H S T D D Y I N A N Y M p.1100
| 21 . . . . . . g.180484
CCT | GGCTACCACTCCAAGAAAGATTTTATTGCCACACAAGGACCTTTACCGAACACTTTG c.3360
P | G Y H S K K D F I A T Q G P L P N T L p.1120
. . . . . . g.180544
AAAGATTTTTGGCGTATGGTTTGGGAGAAAAATGTATATGCCATCATTATGTTGACTAAA c.3420
K D F W R M V W E K N V Y A I I M L T K p.1140
. | 22 . . . . g.184414
TGTGTTGAACAGGGAAGA | ACCAAATGTGAGGAGTATTGGCCCTCCAAGCAGGCTCAGGAC c.3480
C V E Q G R | T K C E E Y W P S K Q A Q D p.1160
. . . . . . g.184474
TATGGAGACATAACTGTGGCAATGACATCAGAAATTGTTCTTCCGGAATGGACCATCAGA c.3540
Y G D I T V A M T S E I V L P E W T I R p.1180
. | 23 . . . . g.187942
GATTTCACAGTGAAAAAT | ATCCAGACAAGTGAGAGTCACCCTCTGAGACAGTTCCATTTC c.3600
D F T V K N | I Q T S E S H P L R Q F H F p.1200
. . . . . . g.188002
ACCTCCTGGCCAGACCACGGTGTTCCCGACACCACTGACCTGCTCATCAACTTCCGGTAC c.3660
T S W P D H G V P D T T D L L I N F R Y p.1220
. . . . . | 24 g.188823
CTCGTTCGTGACTACATGAAGCAGAGTCCTCCCGAATCGCCGATTCTGGTGCATTGCAG | T c.3720
L V R D Y M K Q S P P E S P I L V H C S | p.1240
. . . . . . g.188883
GCTGGGGTCGGAAGGACGGGCACTTTCATTGCCATTGATCGTCTCATCTACCAGATAGAG c.3780
A G V G R T G T F I A I D R L I Y Q I E p.1260
. . . . . . g.188943
AATGAGAACACCGTGGATGTGTATGGGATTGTGTATGACCTTCGAATGCATAGGCCTTTA c.3840
N E N T V D V Y G I V Y D L R M H R P L p.1280
. | 25 . . . . . g.191691
ATGGTGCAGACAGAG | GACCAGTATGTTTTCCTCAATCAGTGTGTTTTGGATATTGTCAGA c.3900
M V Q T E | D Q Y V F L N Q C V L D I V R p.1300
. . . . . . g.191751
TCCCAGAAAGACTCAAAAGTAGATCTTATCTACCAGAACACAACTGCAATGACAATCTAT c.3960
S Q K D S K V D L I Y Q N T T A M T I Y p.1320
. . . . . g.191805
GAAAACCTTGCGCCCGTGACCACATTTGGAAAGACCAATGGTTACATCGCCTAA c.4014
E N L A P V T T F G K T N G Y I A X p.1337
. . . . . . g.191865
ttccaaaggaataacctttctggagtgaaccagaccgtcgcacccacagcgaaggcacat c.*60
. . . . . . g.191925
gccccgatgtcgacatgtttttatatgtctaatatcttaattctttgttctgttttgtga c.*120
. . . . . . g.191985
gaactaattttgagggcatgaagctgcatatgatagatgacaaattggggctgtcggggg c.*180
. . . . . . g.192045
ctgtggatgggtggggagcaaatcatctgcattcctgatgaccaatgggatgaggtcact c.*240
. . . . . . g.192105
ttttttttttttcccccttgaggattgtggaaaaccaggaaaagggagctatgatttttt c.*300
. . . . . . g.192165
tttccaaaacaatttcttttttaaaaaagactattttatatgattcacatgctaaagcca c.*360
. . . . . . g.192225
ggattgtgttgggttgaatatattttaagtatcagaggtctatttttacctactgtgtct c.*420
. . . . . . g.192285
tggaatctagccgatggaaaatacctaattgtggatgatgattgcgcagggaggggtacg c.*480
. . . . . . g.192345
tggcacctcttccgaatgggttttctatttgaacatgtgccttttctgaattatgcttcc c.*540
. . . . . . g.192405
acaggcaaaactcagtagagatctatatttttgtactgaatctcataattggaatatacg c.*600
. . . . . . g.192465
gaatatttaaacagtagcttagcatcagaggtttgcttcctcagtaacatttctgttctc c.*660
. . . . . . g.192525
atttgatcaggggaggcctctttgccccgactccgcttcccctgccccctgtacatttgt c.*720
. . . . . . g.192585
gctccattttttcttcccttttccctcccagttttctccaaagactcttctgttggcaac c.*780
. . . . . . g.192645
attttcaacccattggttgggtgagaatggcgactcaaatatcaccttgagaatttctgt c.*840
. . . . . . g.192705
gggtgggaatgggagaagcagaggaatcctacagtggcagaaatccttttcttgtccctg c.*900
. . . . . . g.192765
tattatcctttttctcatgtctgtatttggtatgaaggattatttaaaggtgcaatatgt c.*960
. . . . . . g.192825
gaattagtgattcatgatgttctaggtttttagtaacgttttactcaggttggcatttta c.*1020
. . . . . . g.192885
tgtgtctgtgtctgtatgtgtgtgtgtatgttcagaagcgtggcaatctgtgaacacttc c.*1080
. . . . . . g.192945
agcgtgaattcagtgtcagattaatccctccttccccaaagtccactggctttcgtctct c.*1140
. . . . . . g.193005
ctctgccgtgacacatatcggaatctactgtgtatatatatatatatatatatatatata c.*1200
. . . . . . g.193065
tatatatatatatatatatacactaagctctcaaaaacagtcattcctatgaattgaggt c.*1260
. . . . . . g.193125
gtacaaagtttgaatttgtatcaaagatgtaattattatttttaaaaccttttcactata c.*1320
. . . . . . g.193185
ctgctgctgtaattactttgatttttaaaatgtagattaatttttttttttttgcttcag c.*1380
. . . . . . g.193245
gtgtgtatccaccaagaatttcaaatttatgtggatttattttattggtacataatctgt c.*1440
. . . . . . g.193305
aaacttcttaaggcattaacatgaaaagattttttctttttattttatattgtggctcag c.*1500
. . . . . . g.193365
gttatattttgaagatgttttgagtttatcctccaataggcaatgaagttgacaaggttt c.*1560
. . . . . . g.193425
tatgaaggaataaccaagtccctggagtcctgtggctgttgccacagtaatgtgtcctgc c.*1620
. . . . . . g.193485
tgtaaacaggacaggtgtgtcctgttgagaatgtgagcgggctcttccagcctcctggtc c.*1680
. . . . . . g.193545
cctcctgactctgccacgcccctcacctcactggcacttcgataactgactggacgtgtt c.*1740
. . . . . . g.193605
aatgggtcttttagggttctaaagggtgaaccacacttttaaagccccggctgtggttcg c.*1800
. . . . . . g.193665
gagggttagtgctgtatgccttttatttccctttccctttgaggtactgaaaggatgaaa c.*1860
. . . . . . g.193725
aggtggtgtcatgttttggggagaatcttacttctcaaatggaaattgcactttttgctg c.*1920
. . . . . . g.193785
aatcctttgcatttttttggtagtaagcagttcattgagtatcaggtcctcaaaggaatg c.*1980
. . . . . . g.193845
agttggcccggctagggtgggccctcttgacctaacttcagagggggccttggctcagta c.*2040
. . . . . . g.193905
ggtgtgaatcagggaagccacattgtcctcagggtgctgtatgaagctgggtgtgggcgg c.*2100
. . . . . . g.193965
attcctcccacaccttcacactggcctgcctccaactcatacagatctcggagcggtcgg c.*2160
. . . . . . g.194025
tacttcattcataggtccctgttcaggcagcagttctgtgggctgtggccctctcccctc c.*2220
. . . . . . g.194085
caatatgtccgaaaccattgtgatgggtggcaaatcccagggagctcctaagccctgctc c.*2280
. . . . . . g.194145
tgcccacatcactgccacagagaagtcagaggaagggacttgttgctaaaaaatccttta c.*2340
. . . . . . g.194205
aaaggttaaatactttaaaagattaaagcaacataactgtaaacatattgtataaaaatg c.*2400
. . . . . . g.194265
aaaaacacaggaaccctcttcccttccgcctggtgtgggcttgggaaatgggcaagcggc c.*2460
. . . . . . g.194325
cccagcaatcatgggaggaactcttgcgggggagcggtctgggattccaaatgggcaggt c.*2520
. . . . . . g.194385
cacacgaaggtcacgatgcttctctgcatcctgaaaagggctggggacagggccagtggg c.*2580
. . . . . . g.194445
ggtggtaagggtatttatagcacagtgcttgaaaagggaagattaatgtgtaaatataaa c.*2640
. . . . . . g.194505
ggacacacaggctgggggttggtcagaggcaagaggagggtgcctctgagcttcaacccc c.*2700
. . . . . . g.194565
tcccaggaacaatgagctcaaattggaagagtccagtggaatcggggggatggtgtgagc c.*2760
. . . . . . g.194625
acccctgttcagtctttgacaattgcatacagaaaagcagctggtatgggtttgggtgtc c.*2820
. . . . . . g.194685
aatgaaagggccaaagactggtggccagctggtttgggggatttgggccattgatagcat c.*2880
. . . . . . g.194745
ctcccaggaacaacgactttttgcctccaaagttggatctagtgatgatcagcaccagca c.*2940
. . . . . . g.194805
ggaaatgacatttggtgtctgcccactgcagccatactgtgacctccagccagacttccg c.*3000
. . . . . . g.194865
cctaattgactccactggatttgtgctctgttgagtcagaggctcccgggggttggggat c.*3060
. . . . . . g.194925
cgaggggcgggggtcagctatgcagcccatcacgtgtgtttttcatctgggatgaaaaag c.*3120
. . . . . . g.194985
cctggttctcttttgaaatgcttgattgtacttattgagctaaacaagtcttggtgactg c.*3180
. . . . . . g.195045
ttgttgatttgcctcaaaagttttaagtcctgggttttcagactactgtgtagcagctgt c.*3240
. . . . . . g.195105
gtgtttaacatactgtagctttttctcccttgggggcacatacaaataggatgtgttgat c.*3300
. . . . . . g.195165
gtggactctaaactgtaattttcctgtaactattttggaatgatgcatatttctaatgtt c.*3360
. . . . . . g.195225
tgttatacttgtacagagtattgctgttggttgctttttttttttttaaggaaaaaatgg c.*3420
. . . . . . g.195285
cctgaaaacatttttttaaagacttacaaataccaaatataaaaaaatgtcaatgcatta c.*3480
(downstream sequence)
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