(used for variant description)
(last modified March 15, 2014)
This file was created to facilitate the description of sequence variants on transcript NM_002875.4 in the RAD51 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000015.9, covering RAD51 transcript NM_002875.4.
(upstream sequence)
. . . . . g.5059
gttacgtcgacgcgggcgtgaccctgggcgagagggtttggcgggaattctgaaagccg c.-241
. . . . . . g.5119
ctggcggaccgcgcgcagcggccagagaccgagccctaaggagagtgcggcgcttcccga c.-181
. . . . . . g.5179
ggcgtgcagctgggaactgcaactcatctgggttgtgcgcagaaggctggggcaagcgag c.-121
. . . . . . g.5239
tagagaagtggagcgtaagccaggggcgttgggggccgtgcgggtcgggcgcgtgccacg c.-61
. . . . . . | 02 g.8630
cccgcggggtgaagtcggagcgcggggcctgctggagagaggagcgctgcggaccgag | ta c.-1
. . . . . . g.8690
ATGGCAATGCAGATGCAGCTTGAAGCAAATGCAGATACTTCAGTGGAAGAAGAAAGCTTT c.60
M A M Q M Q L E A N A D T S V E E E S F p.20
. . | 03. . . . g.10968
GGCCCACAACCCATTTCACGGTTAGAG | CAGTGTGGCATAAATGCCAACGATGTGAAGAAA c.120
G P Q P I S R L E | Q C G I N A N D V K K p.40
. . . . . . g.11028
TTGGAAGAAGCTGGATTCCATACTGTGGAGGCTGTTGCCTATGCGCCAAAGAAGGAGCTA c.180
L E E A G F H T V E A V A Y A P K K E L p.60
. . . . | 04 . . g.16063
ATAAATATTAAGGGAATTAGTGAAGCCAAAGCTGATAAAATTCTG | GCTGAGGCAGCTAAA c.240
I N I K G I S E A K A D K I L | A E A A K p.80
. . . . . . g.16123
TTAGTTCCAATGGGTTTCACCACTGCAACTGAATTCCACCAAAGGCGGTCAGAGATCATA c.300
L V P M G F T T A T E F H Q R R S E I I p.100
. . . . | 05 . . g.18913
CAGATTACTACTGGCTCCAAAGAGCTTGACAAACTACTTCAAG | GTGGAATTGAGACTGGA c.360
Q I T T G S K E L D K L L Q G | G I E T G p.120
. . . . . . g.18973
TCTATCACAGAAATGTTTGGAGAATTCCGAACTGGGAAGACCCAGATCTGTCATACGCTA c.420
S I T E M F G E F R T G K T Q I C H T L p.140
. | 06 . . . . . g.28721
GCTGTCACCTGCCAG | CTTCCCATTGACCGGGGTGGAGGTGAAGGAAAGGCCATGTACATT c.480
A V T C Q | L P I D R G G G E G K A M Y I p.160
. . . . . | 07 . g.38592
GACACTGAGGGTACCTTTAGGCCAGAACGGCTGCTGGCAGTGGCTGAGAG | GTATGGTCTC c.540
D T E G T F R P E R L L A V A E R | Y G L p.180
. . . . . . g.38652
TCTGGCAGTGATGTCCTGGATAATGTAGCATATGCTCGAGCGTTCAACACAGACCACCAG c.600
S G S D V L D N V A Y A R A F N T D H Q p.200
. . . . | 08 . . g.39392
ACCCAGCTCCTTTATCAAGCATCAGCCATGATGGTAGAATCTAG | GTATGCACTGCTTATT c.660
T Q L L Y Q A S A M M V E S R | Y A L L I p.220
. . . . . . g.39452
GTAGACAGTGCCACCGCCCTTTACAGAACAGACTACTCGGGTCGAGGTGAGCTTTCAGCC c.720
V D S A T A L Y R T D Y S G R G E L S A p.240
. . . . . | 09 . g.39730
AGGCAGATGCACTTGGCCAGGTTTCTGCGGATGCTTCTGCGACTCGCTGATGAG | TTTGGT c.780
R Q M H L A R F L R M L L R L A D E | F G p.260
. . . . . . g.39790
GTAGCAGTGGTAATCACTAATCAGGTGGTAGCTCAAGTGGATGGAGCAGCGATGTTTGCT c.840
V A V V I T N Q V V A Q V D G A A M F A p.280
. . . . . | 10 . g.40930
GCTGATCCCAAAAAACCTATTGGAGGAAATATCATCGCCCATGCATCAACAACCAG | ATTG c.900
A D P K K P I G G N I I A H A S T T R | L p.300
. . . . . . g.40990
TATCTGAGGAAAGGAAGAGGGGAAACCAGAATCTGCAAAATCTACGACTCTCCCTGTCTT c.960
Y L R K G R G E T R I C K I Y D S P C L p.320
. . . . . . g.41050
CCTGAAGCTGAAGCTATGTTCGCCATTAATGCAGATGGAGTGGGAGATGCCAAAGACTGA c.1020
P E A E A M F A I N A D G V G D A K D X p.339
. . . . . . g.41110
atcattgggtttttcctctgttaaaaaccttaagtgctgcagcctaatgagagtgcactg c.*60
. . . . . . g.41170
ctccctggggttctctacaggcctcttcctgttgtgactgccaggataaagcttccggga c.*120
. . . . . . g.41230
aaacagctattatatcagcttttctgatggtataaacaggagacaggtcagtagtcacaa c.*180
. . . . . . g.41290
actgatctaaaatgtttattccttctgtagtgtattaatctctgtgtgttttctttggtt c.*240
. . . . . . g.41350
ttggaggaggggtatgaagtatctttgacatggtgccttaggaatgacttgggtttaaca c.*300
. . . . . . g.41410
agctgtctactggacaatcttatgtttccaagagaactaaagctggagagacctgaccct c.*360
. . . . . . g.41470
tctctcacttctaaattaatggtaaaataaaatgcctcagctatgtagcaaagggaatgg c.*420
. . . . . . g.41530
gtctgcacagattctttttttctgtcagtaaaactctcaagcaggtttttaagttgtctg c.*480
. . . . . . g.41590
tctgaatgatcttgtgtaaggttttggttatggagtcttgtgccaaacctactaggccat c.*540
. . . . . . g.41650
tagcccttcaccatctacctgcttggtctttcattgctaagactaactcaagataatcct c.*600
. . . . . . g.41710
agagtcttaaagcatttcaggccagtgtggtgtcttgcgcctgtactcccagcactttgg c.*660
. . . . . . g.41770
gaggccgaggcaggtggatcgcttgagcccaggagttttaagtccagcttggccaaggtg c.*720
. . . . . . g.41830
gtgaaatcccatctctacaaaaaatgcagaacttaatctggacacactgttacacgtgcc c.*780
. . . . . . g.41890
tgtagtcccagctactcgatagcctgaggtgggagaatcacttaagcctggaaggtggaa c.*840
. . . . . . g.41950
gttgcagtgagtcgagattgcactgctgcattccagccagggtgacagagtgagaccatg c.*900
. . . . . . g.42010
tttcaaacaagaaacatttcagagggtaagtaaacagatttgattgtgaggcttctaata c.*960
. . g.42030
aagtagttattagtagtgaa c.*980
(downstream sequence)
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