(used for variant description)
(last modified November 5, 2019)
This file was created to facilitate the description of sequence variants on transcript NM_001101676.1 in the SAMD12 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000008.10, covering SAMD12 transcript NM_001101676.1.
(upstream sequence)
g.5009
gcggcaggt c.-121
. . . . . . g.5069
tggtcctggagcagataagcgcagaatatttaggcgaaagcgagaggaaggggggagcgc c.-61
. . . . . . g.5129
ggggcaggaggagtacctcggccaagaaaattatgcatgcgttagggaagctctgagaga c.-1
. | 02 . . . . . g.46099
ATGGCTGTGGAAG | CTCTCCACTGTGGTTTGAATCCACGGGGTATTGATCACCCTGCCCAT c.60
M A V E A | L H C G L N P R G I D H P A H p.20
. . . . . . g.46159
GCTGAAGGTATTAAACTGCAAATTGAAGGTGAAGGTGTGGAATCTCAATCCATTAAAAAT c.120
A E G I K L Q I E G E G V E S Q S I K N p.40
. . . . . . g.46219
AAAAATTTCCAGAAGGTGCCTGACCAGAAAGGAACTCCCAAGCGACTGCAGGCAGAAGCT c.180
K N F Q K V P D Q K G T P K R L Q A E A p.60
. | 03 . . . . . g.187032
GAGACGGCTAAG | TCAGCTACGGTGAAGCTATCTAAACCGGTGGCTCTATGGACCCAGCAG c.240
E T A K | S A T V K L S K P V A L W T Q Q p.80
. . . . . . g.187092
GATGTCTGCAAGTGGTTGAAGAAACATTGTCCGAATCAGTATCAGATCTACAGTGAGTCA c.300
D V C K W L K K H C P N Q Y Q I Y S E S p.100
. . | 04 . . . . g.247283
TTCAAACAGCATGACATAACTG | GGCGAGCCCTGCTGAGACTTACTGACAAAAAGCTCGAG c.360
F K Q H D I T G | R A L L R L T D K K L E p.120
. . . . . . g.247343
CGAATGGGGATTGCCCAGGAGAACCTCCGGCAGCACATCTTACAACAGGTGCTCCAGCTG c.420
R M G I A Q E N L R Q H I L Q Q V L Q L p.140
. . . . | 05 . . g.429230
AAGGTGCGAGAAGAAGTCAGAAATCTACAGTTACTCACACAAG | CATCATCTGAGGGTTCT c.480
K V R E E V R N L Q L L T Q A | S S E G S p.160
g.429236
CCATAA c.486
P X p.161
. . . . . . g.429296
acacggttagccttccaagctgctgtcctgccagttgatatgaacatggcctgttcctca c.*60
. . . . . . g.429356
cagaaagactaacccatggcactgccagaagatatccttggatcgtggacagattaactg c.*120
. . . . . . g.429416
gattaactgaaaaaagcacccattcagtcaatattatgggttttggaaaaatcttgcttt c.*180
. . . . . . g.429476
gctgtggatttaaaatgaggtgcataatataatgccaactcattccaagtggtcattggc c.*240
. . . . . . g.429536
agaccattagctggaaaattgcttccagttttcatcactgtgcataactcaagttccctt c.*300
. . . . . . g.429596
tggggagctgtctgtgcccttcactagaagtcctgttttagcatggcaactactggatta c.*360
. . . . . . g.429656
ttttattatgtgtgcagatggcatgatgttttagaaaaaaaaaattacagcaattctgca c.*420
. . . . . . g.429716
atctcagtggaagtgttcacaatattatgccctggtaggaatgtaaacacgtctcgatta c.*480
. . . . . . g.429776
tgttagttatgatgtctaaaggtatactgtccaactcttaagcactttatatgagaacac c.*540
. . . . . . g.429836
tacaccaagatgaatcagcacattcagcacatgtgagaaatcaagtattttctttttatt c.*600
. . . . . . g.429896
tttataaatcttagtggtttttttttttccggctcagactgtccaagacaaactccacta c.*660
. . . . . . g.429956
ctcgcatatccccagttgtttgtggtaggttgatgtaaatatggccacaatactgttaga c.*720
. . . . . . g.430016
cttcacctccagatactttattgaacaactggtttacttctagcaccaaagggaagaaga c.*780
. . . . . . g.430076
agggggtccagtgatggtgatatcttagcttgcttctttgttcacaggcactattgacca c.*840
. . . . . . g.430136
catgaacatacaggtactcaaatacaggaggcttctatttggctcctccaagggaggagt c.*900
. . . . . . g.430196
tcctccaagggaaaaaaggggatggtattcttttaatcaaagaccatggtggatggatgg c.*960
. . . . . . g.430256
taagggcaacagaatgcaattcttttgtgtggtctgacgttaacacttcggaaaaaattc c.*1020
. . . . . . g.430316
taagtcaagttgaaatcgccattctctcaagagagaaacatcaagagagaaacatcaagt c.*1080
. . . . . . g.430376
gaccccactatgtgcctagagaaggaaaagggtcaagtcctatactaggttccttactta c.*1140
. . . . . . g.430436
gggtagaacctactagtcccttgttaatcctttctgggattatacctgtgactaattttt c.*1200
. . . . . . g.430496
ttttttttaactatgtcttacgacaaagcacagtcctgggaaaccagtcaacttaattat c.*1260
. . . . . . g.430556
tgcttgtctttgagcattagagacatgttcatattgacttgctacataacactgtagcat c.*1320
. . . . . . g.430616
gttttttcctgaaaatatcaagttggttgaatggaaagctcagcaaagtatgttctgtgt c.*1380
. . . . . . g.430676
gcccactgtcccagcctgggactgacgggcatcagaggctttgctttaaaatatgggtaa c.*1440
. . . . . . g.430736
ccagttctggaagacttccaacgcaagcaagcttggtgttttagggtgtctccagataca c.*1500
. . . . . . g.430796
taagcattgtctgcctccgctcagggtctcaggaaatacacagcccattggaaaccaccc c.*1560
. . . . . . g.430856
acgcctgagatttggaaacctgacggaaagggaggaaggtccaaatgagtcagcagcagg c.*1620
. . . . . . g.430916
atgactcaccacaagcctggcaggctgcagagccagagaagggggcttccaacaaggaac c.*1680
. . . . . . g.430976
tcagagaagttgcagtcaccaccaagatctggcccttcggcaggtcagcaccaggactgc c.*1740
. . . . . . g.431036
caggccctctgcagaccgtaattctcttcacatctataattaggaggccaaactccagct c.*1800
. . . . . . g.431096
gccaacacccttggacacaatattccagtctccactgcccatctcatgtggttcagttct c.*1860
. . . . . . g.431156
aatagcaggtcttcttcttcctttcattccttcctttattcagcaagcatttgttgagca c.*1920
. . . . . . g.431216
tctactatgtgccaagcattgtgcttgggcaacaacagtccacaaagcagactccccacc c.*1980
. . . . . . g.431276
tgcccttatgaaactgtatctcctcctccccaacattatcaccaccccaccatttccaca c.*2040
. . . . . . g.431336
atgaaaactgaattcagacagcattctccattctgccagagtaacctaggaagaagaaca c.*2100
. . . . . . g.431396
tggcagcagacggatcctcagggaggaggcagcagagtgacagatggtaaactgcatcag c.*2160
. . . . . . g.431456
gccacatatttgcacctttcagatacagccaactcttccagggcctagactgagctggtt c.*2220
. . . . . . g.431516
ggagctccccaaagcagcattcagttgcttttccttgatatccaccctggctacctatat c.*2280
. . . . . . g.431576
tccctttctttatataggcacaaccattcaccactacgctggattatctaacactccaat c.*2340
. . . . . . g.431636
tctataactcatccaggggacacacagttgagtctgatgaagcctaagaactgccaggtg c.*2400
. . . . . . g.431696
ctgagatattgtaactgggaattaagatttagccaaggacattgtgagactactgctgac c.*2460
. . . . . . g.431756
tctcttggaaaactggacatgctttgtagtgcaaatgttcactaaatgatggtggttcat c.*2520
. . . . . . g.431816
tgttacttactttggcctttgcaaaatattctgaacaattcaataagtagagtttcctag c.*2580
. . . . . . g.431876
tttgtttgtttttttaagtcaaaggaacgctgtgaaattattgaaagatgatgggtgaag c.*2640
. . . . . . g.431936
agggacctaggagaaggcaaaatgaagaccattaaagagccccattgaagactgtatctc c.*2700
. . . . . . g.431996
taaaaatgccttaatgcctggcacatattccatatttgcatatgaactactattcttttc c.*2760
. . . . . . g.432056
caaactgtcaacttctgtttgaaatcattgtgggggatagtttggaaatatggtggcata c.*2820
. . . . . . g.432116
aaatccaagcagtcaagagctaaaccagcaaaaaagaggaatgacttcattcacaggctt c.*2880
. . . . . . g.432176
tggcttctttattatgtggtggtcctctgtgatctcccatggttaacttcaactgtgctg c.*2940
. . . . . . g.432236
tactttcttcccaagatgcatgtacggaatgttacctcctagaaatccagaaatagttgt c.*3000
. . . . . . g.432296
ggtgagttttgtttgataggaagcaagaggtggggaagtaaaggatacatatttttatgt c.*3060
. . . . . . g.432356
ctaaggactgtaaactgttgatgcttgacttttccttttacctacacctgtgctacacct c.*3120
. . . . . . g.432416
ttattaaaaggctgacacccagacttgtgcaggaaaggcactcttgggaatgaacagaaa c.*3180
. . . . . . g.432476
tgaataattatgagactttccatggtgccaaggggattcgcttatttccactccagaact c.*3240
. . . . . . g.432536
gaatatgcagagcattgccagtcctgctagtgtgaaaagcaaattacttcaatagtttga c.*3300
. . . . . . g.432596
gacgtacctaggggaagagagatcctatcaactttctttgcgggtagtggcgtaccttca c.*3360
. . . . . . g.432656
aatccttgctcaggctctgtgaggtgtgcacccgcagatttcacttctacctccggaatc c.*3420
. . . . . . g.432716
ctggcaaacaagccaggaatctctccagagtcacttcgcagttgctcagaaagaggctaa c.*3480
. . . . . . g.432776
cggtccttagtcctgaggaaattctgccatttttaacattcaaggagaaaaggcgtatca c.*3540
. . . . . . g.432836
gctgtacgtgagaatatcaactaaggataaaaacctctaatggatcccccttgttacttg c.*3600
. . . . . . g.432896
caaatgctttctttgtctgcaaatgtcacataattgattttgcataggaacaacaaaagt c.*3660
. . . . . . g.432956
ctcaaggaattgaagtttttaataccccccttagcactttactttcaccaaaacctcctc c.*3720
. . . . . . g.433016
tttctagtacatgagcagttttgttctttgtgatgttttcctctacattctttagaataa c.*3780
. . . . . . g.433076
ttttgttacttgacaactagacttgtcaatcgtcttagactcttttgaaaaatctaatct c.*3840
. . . . . . g.433136
ttgaaaatgacacaaattcctttattgctttaaggctgttttcattcacccctcccacag c.*3900
. . . . . . g.433196
ccccctccactgcacttttttgttttttgcggggatttttttctttcatctctcttcttt c.*3960
. . . . . . g.433256
taacatgatgctgtgggtagttttcaagaattctataaagaactcaacaaaaagtgtatt c.*4020
. . . . . . g.433316
tgttacctttttccccagtcctaatatttcttcttaagcttgatcttggtgaaaatttgt c.*4080
. . . . . . g.433376
tgcccaaaaagcagtgaggtagggattaataacgctgaccagtcatctggaagattaatt c.*4140
. . . . . . g.433436
aatcccagtgcagccctgagatcaggaaggaggacaggccaggagatgtttctactccag c.*4200
. . . . . . g.433496
gcaccactaaggactctatttcaaaggcagatcctgctccttagtctttttagatctgaa c.*4260
. . . . . . g.433556
tctaatcctgaatccagaaaattatcctatgaattctggtttatcaacgcacatgattcc c.*4320
. . . . . . g.433616
tggcaccattgcatagcttcaaggtaaaagagagccttgtttccattattttgctatggt c.*4380
. . . . . . g.433676
ggcttttgggaagacagagagcattcttttgaaagcgggaaacttaaggaaaagttggcc c.*4440
. . . . . . g.433736
aagtacacaggaaagttctaccacaccttaatataaagaacaaaatagatgcttctcatt c.*4500
. . . . . . g.433796
tggggaaagtagctaaaaggacagtaacagtactgatggccttctgtccatcaccttagc c.*4560
. . . . . . g.433856
tccacagggaaaattctgggtgagagcaagcactgtttctaaaatctaaattttttcagg c.*4620
. . . . . . g.433916
tgaaatttaccagcaacaaatgtaaaagggaactgccatcaggcatagggctagttttat c.*4680
. . . . . . g.433976
acttcctgcctaacggcaaaatgactgagacatgacttccatggaacagcagaaaatgga c.*4740
. . . . . . g.434036
tgccaaagatatcataaaactgaagttcaatttgccacgtaaggctatttaaaaaccctg c.*4800
. . . . . . g.434096
atgcactccaagcattcttccttcagagctttcctcctacaattatatcaagcacaagaa c.*4860
. . . . . . g.434156
ggcaccaacagcatatacttaatgtaatgtaaaagtaaacatatgacttgtgttgaatta c.*4920
. . . . . . g.434216
ccattggctggttgacataataagtgtcatagatatttagacattatttctgatcataca c.*4980
. . . . . . g.434276
aaattattttcataatttcatattcttttcaattttcataaattcttttcaattttcata c.*5040
. . . . . . g.434336
aattggagccaatggtttgggaggttttttgtttgtttgtttgtttggttggttggttat c.*5100
. . . . . . g.434396
ttgttgcgttgttgttttccaaacctcagatattttgagaagccttagaaaggctcttaa c.*5160
. . . . . . g.434456
gcccaggcctttttgcctcatgtgcagagtattaataacagccctactgatgtgaacctc c.*5220
. . . . . . g.434516
aaggaaggaggctattaaattaatccatcactggagatactaatacctcaaacaattaaa c.*5280
. . . . . . g.434576
acactgaagactctgctggttgccttccacattgtttataacctttttaaattcagtcat c.*5340
. . . . . . g.434636
ttggatcaagagaaataaatggttggtttcatatggcttttgccacattagcacagacac c.*5400
. . . . . . g.434696
atctaccaaatgtagaagtccagactgagtggatgcatgagagcaaacagatctgtaata c.*5460
. . . . . . g.434756
tgattgcatttaatcaccgccaccgcccaaattctgtaaaaatatattcaaatatgtaat c.*5520
. . . . . . g.434816
gctaaaaaaaatgcaaaacaggagactcttactagatcatgctttcacttagggtaggat c.*5580
. . . . . . g.434876
aactgatcttgaagataacttcatagaaaaatttgctggctgaaatgccccaggcacctc c.*5640
. . . . . . g.434936
agggttggtcctgtcctattccacaaactgatcatggtcttctcccatcttctcagagga c.*5700
. . . . . . g.434996
gttagccttgcctctaaaatagcaaaaatgccatgaaattatctttctaacctctataga c.*5760
. . . . . . g.435056
gacttcttatccaagtataattccaaaaatatgatttgagtttgagcatgcctgtggtcc c.*5820
. . . . . . g.435116
ttgattctatgatccctaaatcagttctacttttctcactctctctctctctctctctct c.*5880
. . . . . . g.435176
ctctctctctctctctctatatatatatatatatatatatatatatatatatatatatat c.*5940
. . . . . . g.435236
atatatatatataatctccagtattttttttcaaccacaatttagtgcatttagcgtgtt c.*6000
. . . . . . g.435296
aatgttgggaactgcctgctggctctatgtctacttttgacaatgcttatgtccagatac c.*6060
. . . . . . g.435356
catacagtgcatttgagagaggaccaaggttatgttttcccacataccagctgctgcaga c.*6120
. . . . . . g.435416
ggtttcgaagtgcctgacccagttctttttcacatcaaaaaggccttcggttgcagatgg c.*6180
. . . . . . g.435476
aaaccttaaagatgaatgtagagtggggtaggaaattcatgtttgaatgctgaaaccctt c.*6240
. . . . . . g.435536
gtcttttttagttttattcaattcccacctcagatcaccagaaagggaggcctctttggt c.*6300
. . . . . . g.435596
gggtgttggccctcactgggggtaaaaggggttctatttgcttaaactcatgctcgtagg c.*6360
. . . . . . g.435656
caattttagggctctctggggctctgaatggtttctccaccaccacctttcttccaccaa c.*6420
. . . . . . g.435716
tagaaagatgttgtccttacaaggccatgtctgagaagaccatggtttaactagtaaaag c.*6480
. . . . . . g.435776
aagctcacattgcagagagctgaataataccaggctcttgactttgtactgtgtgtcaca c.*6540
. . . . . . g.435836
gtcatgattgggacagaaggaaccagtctgctgaaaagtcaagccagcacaaatatttgg c.*6600
. . . . . . g.435896
aaactaattccactgaaactcttgtatcattaaatcatactattgtagtttcagttaatg c.*6660
. . . . . . g.435956
taattatttaatatcaggcactaaattaaatagctttgcacaaaattttagaaaagatca c.*6720
. . . . . . g.436016
atcttgtaacaaaatttaatattaacagtaaaaagcacctgagaaaagaaaatatcgatc c.*6780
. . . . . . g.436076
tgttgtggtttatatacttgagttattcttagaactttgtggagattgacactgctctga c.*6840
. . . . . . g.436136
taaaaaggaagaaaatgttttgaattcaagaatgctagactaatagaaatagcccagtct c.*6900
. . . . . . g.436196
ctctgggccactgctcttcagtatggggtgctctctgtccctccttagcagatggggttg c.*6960
. . . . . . g.436256
tttggaggctaaaatgagctaagggaagaagctatactgtgcctccaatatcccttatgt c.*7020
. . . . . . g.436316
gtaattagagtgccgatctgggctgcaggctttattcaatgattcctttcccttacttga c.*7080
. . . . . . g.436376
ggctttctctgtagagctgttatttctgagcctccattctgggatttacaaaggaaacag c.*7140
. . . . . . g.436436
aatgatgaagaagtaacaatcagcattttacacacacgcacacacacacacacacacaca c.*7200
. . . . . . g.436496
ctttttctaatatatgaggctagtctgcagagtccacagcccaggtgtccatttatttcc c.*7260
. . . . . . g.436556
acttcttcacctcccaaagatttagagctccatgatctaccaaggtgaagactgccaatc c.*7320
. . . . . . g.436616
ccaggttggagaagacccgtcagagtgtggaggtgccaaactgagaggcacaggaagcag c.*7380
. . . . . . g.436676
acagccacatcaaacttttttgatgaactactgcaaattggtgtttgttctaggaaagaa c.*7440
. . . . . . g.436736
agaggaagaaaaattacacaatgtgaattgaacataagagcagtgctctttacagagtat c.*7500
. . . . . . g.436796
gagaagggaggatgggggagaatctgattaaaaaaatgattcattccttcacagacacta c.*7560
. . . . . . g.436856
acaaacatggctaaaaagcacatgtcagaacacagaagcctaggtagatggttgacattt c.*7620
. . . . . . g.436916
ttataacttccttaagtgagtagttaaaccagcagtcttaattctgttggtcttccaaga c.*7680
. . . . . . g.436976
gtgtttaattacataagtattacctgtattcatttcccacaactgttgggtttttctttc c.*7740
. . . . . . g.437036
tttttttttttttttttttttttcctctgtgcatcctagaaaaactcccaggactagact c.*7800
. . . . . . g.437096
taggaggaggcaatcaagttatgtggtaaaacaagagtgccttttctgttggatatccac c.*7860
. . . . . . g.437156
tttagtttcctggcttccagggcataagatgtttagaaactttttttctctaaacataag c.*7920
. . . . . . g.437216
aattattgtgtaccacaattttgaaccaccgatttccatatcttcagcagctatcaactt c.*7980
. . . . . . g.437276
gccaattccctttgggtctcctttgtatattcttatgtttccttctgtttccagttgtcc c.*8040
. . . . . . g.437336
tcaaaaagagttgaggggggcatgactcttataaaatggataaaaatgaaactgtacaga c.*8100
. . . . . . g.437396
tgtttgcctcccttgtatctgtgagcatgatctctatcaggctggaaaatctgctttatc c.*8160
. . . . . . g.437456
attttgtatatttgactattttgtattcagcattacttgactccttatgtgcatggcaat c.*8220
. . . g.437491
gtattaaaatgtgggatttctattaccgtgtaaaa c.*8255
(downstream sequence)
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