(used for variant description)
(last modified April 26, 2026)
This file was created to facilitate the description of sequence variants on transcript NM_080877.2 in the SLC34A3 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000009.11, covering SLC34A3 transcript NM_080877.2.
(upstream sequence)
g.5182
acacag c.-181
. . . . . . g.5242
gtaggagctcctaggaccaggctgaggcccagggacagtgaggccgaggctgggtggcct c.-121
. . . . . . g.5302
ccaggccaagggcttgggccccatcctgagtctccaggacccaagggcaagagacgccag c.-61
. . . | 02 . . . g.5946
gcttgggcagcaggagggagg | atctagacctgggcctgggtctgtccctgcccgaaatcc c.-1
. . . . . . g.6006
ATGCCGAGTTCCCTTCCCGGCAGCCAGGTCCCCCACCCCACTCTGGACGCGGTTGACCTA c.60
M P S S L P G S Q V P H P T L D A V D L p.20
. . | 03 . . . . g.6350
GTGGAAAAGACTCTGAGGAATGAAG | GGACCTCCAGTTCTGCTCCAGTCTTGGAGGAAGGG c.120
V E K T L R N E G | T S S S A P V L E E G p.40
. . . . . | 04 . g.6823
GACACAGACCCCTGGACCCTCCCTCAGCTGAAGGACACAAGCCAGCCCTGGAAAG | AGCTC c.180
D T D P W T L P Q L K D T S Q P W K E | L p.60
. . . . . . g.6883
CGCGTGGCCGGCAGGCTGCGCCGCGTGGCCGGCAGCGTCCTCAAGGCCTGCGGGCTCCTC c.240
R V A G R L R R V A G S V L K A C G L L p.80
. . . . . . g.6943
GGCAGCCTGTACTTCTTCATCTGCTCTCTGGACGTCCTCAGCTCCGCCTTCCAGCTGCTG c.300
G S L Y F F I C S L D V L S S A F Q L L p.100
| 05 . . . . . . g.7083
GGCA | GCAAAGTGGCCGGAGACATCTTCAAGGACAACGTGGTGCTGTCCAACCCTGTGGCT c.360
G S | K V A G D I F K D N V V L S N P V A p.120
. . . . . . g.7143
GGACTGGTCATTGGCGTGCTGGTCACAGCCCTGGTGCAGAGTTCCAGCACGTCCTCCTCC c.420
G L V I G V L V T A L V Q S S S T S S S p.140
. . | 06 . . . g.7279
ATCGTGGTCAGCATGGTGGCTGCTAAGC | TGCTGACTGTCCGGGTGTCTGTGCCCATCATC c.480
I V V S M V A A K L | L T V R V S V P I I p.160
. . . . . . g.7339
ATGGGTGTCAACGTAGGCACATCCATCACCAGCACCCTGGTCTCAATGGCGCAGTCAGGG c.540
M G V N V G T S I T S T L V S M A Q S G p.180
. . | 07 . . . . g.7492
GACCGGGATGAATTTCAGAG | GGCTTTCAGCGGCTCGGCGGTGCACGGGATCTTCAACTGG c.600
D R D E F Q R | A F S G S A V H G I F N W p.200
. . . . . . g.7552
CTCACAGTGCTGGTCCTGCTGCCACTGGAGAGCGCCACGGCCCTGCTGGAGAGGCTAAGT c.660
L T V L V L L P L E S A T A L L E R L S p.220
. . . . . . g.7612
GAGCTAGCCCTGGGTGCCGCCAGCCTGACACCCAGGGCGCAGGCGCCCGACATCCTCAAG c.720
E L A L G A A S L T P R A Q A P D I L K p.240
. . . | 08 . . . g.7900
GTGCTGACGAAGCCGCTCACACACCTCATCGTGCAG | TTGGACTCCGACATGATCATGAGC c.780
V L T K P L T H L I V Q | L D S D M I M S p.260
. . . . . . g.7960
AGTGCCACAGGCAACGCCACTAACAGCAGTCTCATTAAGCACTGGTGCGGCACCACGGGG c.840
S A T G N A T N S S L I K H W C G T T G p.280
| 09 . . . . . . g.8160
CAGCCG | ACCCAGGAGAACAGCAGCTGTGGCGCCTTCGGCCCGTGCACAGAGAAGAACAGC c.900
Q P | T Q E N S S C G A F G P C T E K N S p.300
. . | 10 . . . . g.8387
ACAGCCCCGGCGGACAGGCTGCCCT | GCCGCCACCTGTTTGCGGGCACGGAGCTCACGGAC c.960
T A P A D R L P C | R H L F A G T E L T D p.320
. . . . . . g.8447
CTGGCCGTGGGCTGCATCCTGCTGGCCGGCTCCCTGCTGGTGCTCTGCGGCTGCCTGGTC c.1020
L A V G C I L L A G S L L V L C G C L V p.340
. . . . . . g.8507
CTCATAGTCAAGCTGCTCAACTCTGTGCTGCGCGGCCGCGTGGCCCAGGTCGTGAGGACA c.1080
L I V K L L N S V L R G R V A Q V V R T p.360
. | 11 . . . . . g.8706
GTCATCAATGCGG | ACTTCCCCTTCCCGCTGGGCTGGCTCGGCGGCTACCTGGCCGTCCTC c.1140
V I N A D | F P F P L G W L G G Y L A V L p.380
. . . . . . g.8766
GCGGGCGCCGGCCTGACCTTCGCACTGCAGAGCAGCAGCGTCTTCACGGCGGCCGTCGTG c.1200
A G A G L T F A L Q S S S V F T A A V V p.400
. | 12 . . . . . g.8900
CCCCTCATGG | GGGTCGGGGTGATCAGTCTGGACCGGGCGTACCCCCTCTTACTGGGCTCC c.1260
P L M G | V G V I S L D R A Y P L L L G S p.420
. . . . . . g.8960
AACATCGGCACCACTACCACAGCCCTGCTGGCTGCCCTGGCCAGCCCCGCAGACAGGATG c.1320
N I G T T T T A L L A A L A S P A D R M p.440
. | 13 . . . . . g.10240
CTCAGCGCCCTGCAG | GTCGCCCTCATCCACTTCTTCTTCAACCTGGCCGGCATCCTGCTG c.1380
L S A L Q | V A L I H F F F N L A G I L L p.460
. . . . . . g.10300
TGGTACCTGGTGCCTGCACTGCGGCTGCCCATCCCGCTGGCCAGGCACTTCGGGGTGGTG c.1440
W Y L V P A L R L P I P L A R H F G V V p.480
. . . . . . g.10360
ACCGCCCGTTACCGCTGGGTGGCTGGGGTCTACCTGCTGCTCGGATTCCTGCTGCTGCCC c.1500
T A R Y R W V A G V Y L L L G F L L L P p.500
. . . . . . g.10420
CTGGCGGCCTTCGGGCTCTCCCTGGCAGGGGGCATGGAGCTGGCCGCTGTCGGGGGTCCC c.1560
L A A F G L S L A G G M E L A A V G G P p.520
. . . . . . g.10480
CTGGTGGGGCTGGTGCTCCTCGTCATCCTGGTTACTGTCCTGCAGCGGCGCCGGCCGGCC c.1620
L V G L V L L V I L V T V L Q R R R P A p.540
. . . . . . g.10540
TGGCTGCCTGTCCGCCTGCGCTCCTGGGCCTGGCTCCCCGTCTGGCTCCATTCTCTGGAG c.1680
W L P V R L R S W A W L P V W L H S L E p.560
. . . . . . g.10600
CCCTGGGACCGCCTGGTGACCCGCTGCTGCCCCTGCAACGTCTGCAGCCCCCCGAAGGCC c.1740
P W D R L V T R C C P C N V C S P P K A p.580
. . . . . . g.10660
ACCACCAAAGAGGCCTACTGCTACGAGAACCCTGAGATCTTGGCCTCCCAGCAGTTGTGA c.1800
T T K E A Y C Y E N P E I L A S Q Q L X p.599
. . . . . . g.10720
cgggcagttgctgagcagaccgccccaccctccccggctgggagggctctggagggccct c.*60
. . . . . . g.10780
ggagggggggtccccgcggcagctgacctccggtcacctgcttccccttctgtgcaaata c.*120
. g.10798
aaccaggctgttatctgg c.*138
(downstream sequence)
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