SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae) (SLX4) - coding DNA reference sequence

(used for variant description)

(last modified October 3, 2014)


This file was created to facilitate the description of sequence variants in the SLX4 gene based on a coding DNA reference sequence following the HGVS recommendations. The sequence was taken from NG_028123.1 (identical to LRG_503), covering SLX4 transcript NM_032444.2.


Please note that introns are available by clicking on the exon numbers above the sequence.
 (upstream sequence)
                                         .         .        | 02    g.7020
                                  agaaggtgccgcggcggcgccggag | at    c.-601

 .         .         .         .         .         .                g.7080
 gtgtaattaagtgaaccatatatgtttcatcatcatggagatcttggagaattatctgag       c.-541

 .         .         .         .         .         .                g.7140
 caccaggttcatatgtattcgatctcagaggcatctattggacaacaaaacactctttca       c.-481

 .         .         .         .         .         .                g.7200
 gttgtgaactttatttatttattattattattttttgagacagagttttgctcttgttgc       c.-421

 .         .         .         .         .         .                g.7260
 ccaggttagagtgcagtggcacgatctcggctcactgcaatctccgcctcccaggttcaa       c.-361

 .         .         .         .         .         .                g.7320
 gcgattctcttgcctctgcctcccgagtagctgggattacaggcatctgctaccacgcct       c.-301

 .         .         .         .         .         .                g.7380
 ggccaattttttgtattttcagttgaaacgaggtttcaccatattggccaggctggtctc       c.-241

 .         .         .         .         .         .                g.7440
 gaacttctgacctcaggtgatccaccccccgcctcgtcctccaaaagagctgggattaca       c.-181

 .         .         .         .         .         .                g.7500
 agtgtgagccaccgcgcccggcccagttgtggactttaacagagggaagctttaaacatg       c.-121

 .         .         .         .         .         .                g.7560
 tttaaccacaggcccaatttgaacaaagatacttcaatcattatagagaggaaaacagta       c.-61

 .         .         .         .         .         .                g.7620
 ctttttgttcaattgtgcaaactctccaagtatctaatggagaagtagagaagaacccta       c.-1

          .         .         .         .         .         .       g.7680
 ATGAAACTGAGTGTGAATGAGGCTCAGCTAGGCTTCTACTTGGGTTCACTTTCTCATCTG       c.60
 M  K  L  S  V  N  E  A  Q  L  G  F  Y  L  G  S  L  S  H  L         p.20

          .         .         .         .         .         .       g.7740
 TCTGCCTGTCCTGGGATTGACCCTCGCTCCTCTGAAGACCAGCCTGAAAGCCTTAAAACT       c.120
 S  A  C  P  G  I  D  P  R  S  S  E  D  Q  P  E  S  L  K  T         p.40

          .         .         .         .         .         .       g.7800
 GGTCAGATGATGGATGAGTCTGATGAGGACTTTAAAGAACTCTGCGCTAGCTTTTTCCAA       c.180
 G  Q  M  M  D  E  S  D  E  D  F  K  E  L  C  A  S  F  F  Q         p.60

          .         .         .         .         .         .       g.7860
 AGGGTGAAAAAACATGGAATCAAGGAAGTGTCAGGAGAAAGGAAGACACAAAAGGCTGCC       c.240
 R  V  K  K  H  G  I  K  E  V  S  G  E  R  K  T  Q  K  A  A         p.80

          .         .         .         .         .         .       g.7920
 TCAAACGGCACTCAGATAAGAAGCAAATTGAAAAGGACCAAACAAACTGCTACCAAGACC       c.300
 S  N  G  T  Q  I  R  S  K  L  K  R  T  K  Q  T  A  T  K  T         p.100

          .         .         .         .         .         .       g.7980
 AAAACCCTTCAAGGCCCTGCAGAGAAGAAACCTCCGTCTGGCAGCCAGGCCCCTAGGACT       c.360
 K  T  L  Q  G  P  A  E  K  K  P  P  S  G  S  Q  A  P  R  T         p.120

          .         .         .         .         .         .       g.8040
 AAAAAGCAAAGGGTAACCAAATGGCAAGCAAGTGAACCGGCCCACTCTGTGAATGGGGAG       c.420
 K  K  Q  R  V  T  K  W  Q  A  S  E  P  A  H  S  V  N  G  E         p.140

          .         .         .         .         .         .       g.8100
 GGGGGTGTGCTTGCCTCTGCTCCAGATCCACCTGTGCTCCGGGAAACAGCACAAAACACC       c.480
 G  G  V  L  A  S  A  P  D  P  P  V  L  R  E  T  A  Q  N  T         p.160

          .         .         .         .         .      | 03  .    g.9891
 CAGACGGGTAACCAGCAAGAACCATCGCCAAACCTTTCCAGAGAGAAAACCAGAG | AGAAT    c.540
 Q  T  G  N  Q  Q  E  P  S  P  N  L  S  R  E  K  T  R  E |   N      p.180

          .         .         .         .         .         .       g.9951
 GTGCCCAACAGCGACTCCCAGCCTCCTCCTTCCTGTTTGACAACAGCAGTGCCAAGTCCC       c.600
 V  P  N  S  D  S  Q  P  P  P  S  C  L  T  T  A  V  P  S  P         p.200

          .         .         .         .         .         .       g.10011
 TCCAAACCCCGCACAGCACAATTGGTCCTACAGCGAATGCAGCAGTTCAAGAGAGCAGAC       c.660
 S  K  P  R  T  A  Q  L  V  L  Q  R  M  Q  Q  F  K  R  A  D         p.220

          .         .         .         .         .         .       g.10071
 CCCGAGCGTTTGAGACACGCTTCAGAAGAGTGCTCCCTCGAGGCTGCGCGGGAAGAAAAT       c.720
 P  E  R  L  R  H  A  S  E  E  C  S  L  E  A  A  R  E  E  N         p.240

          .         .         .         . | 04       .         .    g.14297
 GTCCCAAAGGATCCTCAAGAGGAGATGATGGCGGGGAATG | TGTATGGGCTTGGGCCCCCT    c.780
 V  P  K  D  P  Q  E  E  M  M  A  G  N  V |   Y  G  L  G  P  P      p.260

          .         .         .         .         .         .       g.14357
 GCCCCAGAGAGCGACGCTGCGGTGGCCTTGACCCTGCAGCAGGAGTTTGCACGGGTAGGA       c.840
 A  P  E  S  D  A  A  V  A  L  T  L  Q  Q  E  F  A  R  V  G         p.280

          .         .         .         .         .         .       g.14417
 GCATCGGCACATGATGATAGCCTGGAGGAAAAGGGTTTGTTCTTCTGCCAGATTTGTCAA       c.900
 A  S  A  H  D  D  S  L  E  E  K  G  L  F  F  C  Q  I  C  Q         p.300

          .         .         .         .         . | 05       .    g.15403
 AAGAACCTCTCAGCCATGAACGTGACCCGAAGGGAACAGCATGTGAACAG | GTGCTTGGAT    c.960
 K  N  L  S  A  M  N  V  T  R  R  E  Q  H  V  N  R  |  C  L  D      p.320

          .         .         .         .         .         .       g.15463
 GAAGCTGAAAAGACACTAAGACCTTCTGTGCCTCAGATCCCTGAGTGCCCGATTTGTGGG       c.1020
 E  A  E  K  T  L  R  P  S  V  P  Q  I  P  E  C  P  I  C  G         p.340

          .         .         .         .         .         .       g.15523
 AAACCGTTTCTTACCTTAAAGAGCAGAACCAGTCACTTGAAGCAGTGTGCTGTGAAGATG       c.1080
 K  P  F  L  T  L  K  S  R  T  S  H  L  K  Q  C  A  V  K  M         p.360

          .         .         .         .         .         .       g.15583
 GAGGTTGGCCCCCAGCTCCTGCTTCAGGCTGTGCGGCTGCAGACAGCACAGCCTGAGGGT       c.1140
 E  V  G  P  Q  L  L  L  Q  A  V  R  L  Q  T  A  Q  P  E  G         p.380

          .         .    | 06    .         .         .         .    g.18622
 AGCAGCAGCCCACCCATGTTCAG | CTTCAGTGATCACAGTAGAGGTCTGAAACGGAGAGGA    c.1200
 S  S  S  P  P  M  F  S  |  F  S  D  H  S  R  G  L  K  R  R  G      p.400

          .         .         .         .         .         .       g.18682
 CCCACCAGCAAGAAGGAGCCACGGAAGAGGCGGAAGGTGGACGAGGCACCGTCCGAGGAC       c.1260
 P  T  S  K  K  E  P  R  K  R  R  K  V  D  E  A  P  S  E  D         p.420

          .         .         .         .         .         .       g.18742
 CTGCTGGTGGCCATGGCTCTGTCCCGGTCGGAGATGGAGCCGGGTGCGGCTGTACCAGCG       c.1320
 L  L  V  A  M  A  L  S  R  S  E  M  E  P  G  A  A  V  P  A         p.440

          .         .         .         .       | 07 .         .    g.18903
 CTCAGGCTGGAAAGTGCCTTTTCTGAGAGGATAAGACCAGAAGCAG | AGAATAAAAGTCGC    c.1380
 L  R  L  E  S  A  F  S  E  R  I  R  P  E  A  E |   N  K  S  R      p.460

          .         .         .         .         .         .       g.18963
 AAGAAGAAACCCCCGGTATCCCCCCCATTGTTGTTAGTCCAGGACTCTGAAACCACAGGC       c.1440
 K  K  K  P  P  V  S  P  P  L  L  L  V  Q  D  S  E  T  T  G         p.480

          .         .         .         .         .         .       g.19023
 CGACAGATAGAGGACCGTGTGGCCCTGCTCCTCTCTGAGGAAGTGGAATTGTCTAGCACG       c.1500
 R  Q  I  E  D  R  V  A  L  L  L  S  E  E  V  E  L  S  S  T         p.500

          .         .         .         .         .         .       g.19083
 CCACCACTTCCTGCCAGCAGGATTTTAAAGGAAGGGTGGGAAAGAGCGGGCCAGTGTCCT       c.1560
 P  P  L  P  A  S  R  I  L  K  E  G  W  E  R  A  G  Q  C  P         p.520

          .         .         .         .         .         .       g.19143
 CCTCCACCTGAACGCAAGCAGAGCTTTCTGTGGGAGGGCAGCGCACTGACTGGGGCCTGG       c.1620
 P  P  P  E  R  K  Q  S  F  L  W  E  G  S  A  L  T  G  A  W         p.540

          .         .         .         .         .         .       g.19203
 GCCATGGAGGACTTCTACACGGCCAGGCTGGTCCCTCCTCTCGTGCCCCAGCGGCCTGCC       c.1680
 A  M  E  D  F  Y  T  A  R  L  V  P  P  L  V  P  Q  R  P  A         p.560

     | 08    .         .         .         .         .         .    g.20248
 CAG | GGCCTTATGCAGGAGCCCGTGCCGCCTCTGGTGCCACCTGAGCACTCAGAGCTGAGC    c.1740
 Q   | G  L  M  Q  E  P  V  P  P  L  V  P  P  E  H  S  E  L  S      p.580

          .         .         .         .         .         .       g.20308
 GAGCGAAGGTCACCCGCTCTCCACGGCACCCCCACTGCAGGCTGTGGCTCCAGGGGCCCG       c.1800
 E  R  R  S  P  A  L  H  G  T  P  T  A  G  C  G  S  R  G  P         p.600

          .         .         .         .         .         .       g.20368
 TCGCCTTCGGCCAGCCAGAGGGAGCACCAGGCCCTGCAGGACCTCGTGGACCTGGCGAGG       c.1860
 S  P  S  A  S  Q  R  E  H  Q  A  L  Q  D  L  V  D  L  A  R         p.620

          .         .         .         .         .         .       g.20428
 GAGGGACTGAGCGCCAGCCCGTGGCCCGGCAGTGGGGGCCTGGCTGGCTCGGAAGGGACT       c.1920
 E  G  L  S  A  S  P  W  P  G  S  G  G  L  A  G  S  E  G  T         p.640

      | 09   .         .         .         .         .         .    g.20947
 GCAG | GGTTGGACGTGGTGCCCGGCGGCCTTCCTCTGACTGGGTTTGTGGTGCCATCGCAG    c.1980
 A  G |   L  D  V  V  P  G  G  L  P  L  T  G  F  V  V  P  S  Q      p.660

          .         .         .    | 10    .         .         .    g.22012
 GACAAGCACCCGGACAGGGGCGGCCGCACCTTG | CTCTCCCTCGGGCTGCTGGTTGCTGAC    c.2040
 D  K  H  P  D  R  G  G  R  T  L   | L  S  L  G  L  L  V  A  D      p.680

          .         .         .         .         .         .       g.22072
 TTTGGCGCCATGGTCAATAACCCACACCTGAGTGATGTCCAGTTTCAGACGGACAGCGGG       c.2100
 F  G  A  M  V  N  N  P  H  L  S  D  V  Q  F  Q  T  D  S  G         p.700

          .         .         .         .         .         .       g.22132
 GAGGTGCTTTACGCCCACAAGTTCGTGCTTTATGCCCGATGCCCGCTCCTCATCCAGTAT       c.2160
 E  V  L  Y  A  H  K  F  V  L  Y  A  R  C  P  L  L  I  Q  Y         p.720

  | 11       .         .         .         .         .         .    g.23779
  | GTGAACAATGAAGGCTTCTCCGCTGTAGAGGACGGGGTTCTGACCCAGCGTGTCCTGCTG    c.2220
  | V  N  N  E  G  F  S  A  V  E  D  G  V  L  T  Q  R  V  L  L      p.740

          .         .         .         .         .         .       g.23839
 GGTGACGTGAGCACCGAGGCCGCCCGCACGTTCCTGCACTATCTCTACACTGCGGACACT       c.2280
 G  D  V  S  T  E  A  A  R  T  F  L  H  Y  L  Y  T  A  D  T         p.760

          .         .         .         .        | 12.         .    g.25287
 GGCCTTCCTCCTGGCCTTAGCTCTGAGCTGAGCTCCCTGGCCCACAG | GTTTGGCGTGAGT    c.2340
 G  L  P  P  G  L  S  S  E  L  S  S  L  A  H  R  |  F  G  V  S      p.780

          .         .         .         .         .         .       g.25347
 GAGCTCGTTCACCTGTGCGAACAGGTGCCTATTGCCACTGACTCAGAGGGCAAACCATGG       c.2400
 E  L  V  H  L  C  E  Q  V  P  I  A  T  D  S  E  G  K  P  W         p.800

          .         .         .         .         .         .       g.25407
 GAGGAGAAGGAAGCAGAGAATTGCGAAAGCAGGGCCGAGAATTTCCAGGAACTCTTGAGG       c.2460
 E  E  K  E  A  E  N  C  E  S  R  A  E  N  F  Q  E  L  L  R         p.820

          .         .         .         .         .         .       g.25467
 TCAATGTGGGCAGATGAAGAGGAGGAAGCGGAGACTTTGTTGAAATCCAAGGACCACGAA       c.2520
 S  M  W  A  D  E  E  E  E  A  E  T  L  L  K  S  K  D  H  E         p.840

          .         .         .         .         .         .       g.25527
 GAAGATCAAGAAAACGTGAATGAAGCAGAAATGGAAGAAATTTATGAATTTGCAGCTACT       c.2580
 E  D  Q  E  N  V  N  E  A  E  M  E  E  I  Y  E  F  A  A  T         p.860

          .         .         .         .         .         .       g.25587
 CAGCGAAAGCTTCTCCAGGAAGAAAGGGCAGCGGGTGCCGGCGAGGACGCTGACTGGCTG       c.2640
 Q  R  K  L  L  Q  E  E  R  A  A  G  A  G  E  D  A  D  W  L         p.880

          .         .         .         .         .         .       g.25647
 GAGGGTGGCAGTCCGGTTTCTGGGCAACTCCTAGCAGGTGTCCAGGTGCAGAAACAGTGG       c.2700
 E  G  G  S  P  V  S  G  Q  L  L  A  G  V  Q  V  Q  K  Q  W         p.900

          .         .         .         .         .         .       g.25707
 GACAAGGTGGAGGAGATGGAGCCGTTGGAGCCAGGAAGAGATGAGGCCGCCACCACCTGG       c.2760
 D  K  V  E  E  M  E  P  L  E  P  G  R  D  E  A  A  T  T  W         p.920

          .         .         .         .         .         .       g.25767
 GAGAAGATGGGACAGTGCGCTCTCCCGCCACCCCAGGGCCAGCACTCAGGGGCACGGGGA       c.2820
 E  K  M  G  Q  C  A  L  P  P  P  Q  G  Q  H  S  G  A  R  G         p.940

          .         .         .         .         .         .       g.25827
 GCAGAGGCCCCTGAGCAGGAGGCGCCAGAGGAGGCGCTTGGCCATTCCAGCTGCTCCAGC       c.2880
 A  E  A  P  E  Q  E  A  P  E  E  A  L  G  H  S  S  C  S  S         p.960

          .         .         .         .         .         .       g.25887
 CCTTCCAGGGACTGCCAGGCAGAGAGAAAAGAAGGCTCTCTTCCGCACTCAGATGATGCC       c.2940
 P  S  R  D  C  Q  A  E  R  K  E  G  S  L  P  H  S  D  D  A         p.980

          .         .         .         .         .         .       g.25947
 GGGGATTACGAACAGCTCTTCTCATCAACTCAGGGAGAGATCTCAGAGCCGTCCCAAATA       c.3000
 G  D  Y  E  Q  L  F  S  S  T  Q  G  E  I  S  E  P  S  Q  I         p.1000

          .         .         .         .         .         .       g.26007
 ACAAGTGAGCCCGAGGAACAAAGTGGCGCTGTCAGGGAAAGGGGGCTGGAGGTTTCTCAT       c.3060
 T  S  E  P  E  E  Q  S  G  A  V  R  E  R  G  L  E  V  S  H         p.1020

          .         .         .         .         .         .       g.26067
 CGCCTGGCTCCCTGGCAGGCATCTCCACCGCACCCGTGCCGCTTCCTATTGGGGCCTCCC       c.3120
 R  L  A  P  W  Q  A  S  P  P  H  P  C  R  F  L  L  G  P  P         p.1040

          .         .         .         .         .         .       g.26127
 CAGGGCGGGAGTCCCCGCGGGTCTCATCACACAAGTGGGTCGTCCCTGTCAACACCCCGG       c.3180
 Q  G  G  S  P  R  G  S  H  H  T  S  G  S  S  L  S  T  P  R         p.1060

          .         .         .         .         .         .       g.26187
 TCCCGTGGCGGAACTTCCCAGGTGGGCTCCCCAACCTTGCTGTCTCCAGCTGTGCCATCA       c.3240
 S  R  G  G  T  S  Q  V  G  S  P  T  L  L  S  P  A  V  P  S         p.1080

          .         .         .         .         .         .       g.26247
 AAGCAGAAAAGGGACAGGAGCATCCTCACGCTGTCTAAAGAGCCAGGGCACCAGAAAGGC       c.3300
 K  Q  K  R  D  R  S  I  L  T  L  S  K  E  P  G  H  Q  K  G         p.1100

          .         .         .         .         .         .       g.26307
 AAAGAGCGTCGGTCCGTGCTGGAGTGCAGAAATAAGGGGGTCCTGATGTTCCCAGAAAAA       c.3360
 K  E  R  R  S  V  L  E  C  R  N  K  G  V  L  M  F  P  E  K         p.1120

          .         .         .         .         .         .       g.26367
 TCTCCGTCTATTGACCTAACCCAGTCAAATCCTGACCATTCGAGCTCCAGATCTCAGAAA       c.3420
 S  P  S  I  D  L  T  Q  S  N  P  D  H  S  S  S  R  S  Q  K         p.1140

          .         .         .         .         .         .       g.26427
 TCTTCATCCAAACTGAACGAAGAAGATGAGGTCATCCTCTTACTGGACTCGGATGAGGAG       c.3480
 S  S  S  K  L  N  E  E  D  E  V  I  L  L  L  D  S  D  E  E         p.1160

          .         .         .         .         .         .       g.26487
 CTGGAGCTAGAACAAACCAAAATGAAGTCCATTTCTAGTGATCCTCTGGAAGAAAAGAAA       c.3540
 L  E  L  E  Q  T  K  M  K  S  I  S  S  D  P  L  E  E  K  K         p.1180

          .         .         .         .         .         .       g.26547
 GCTCTAGAAATTAGCCCTAGGTCCTGTGAGCTGTTTTCCATCATTGATGTTGATGCAGAT       c.3600
 A  L  E  I  S  P  R  S  C  E  L  F  S  I  I  D  V  D  A  D         p.1200

          .         .         .         .         .         .       g.26607
 CAGGAACCTTCCCAGAGCCCACCAAGAAGCGAAGCTGTGCTGCAGCAGGAGGATGAGGGG       c.3660
 Q  E  P  S  Q  S  P  P  R  S  E  A  V  L  Q  Q  E  D  E  G         p.1220

          .         .         .         .         .         .       g.26667
 GCGCTGCCGGAGAATCGGGGCTCTTTGGGCAGGAGAGGGGCTCCCTGGCTGTTCTGTGAC       c.3720
 A  L  P  E  N  R  G  S  L  G  R  R  G  A  P  W  L  F  C  D         p.1240

          .         .         .         .         .         .       g.26727
 CGTGAGAGCAGCCCCAGCGAGGCCAGCACCACAGACACCTCGTGGCTGGTGCCCGCCACC       c.3780
 R  E  S  S  P  S  E  A  S  T  T  D  T  S  W  L  V  P  A  T         p.1260

          .         .         .         .         .         .       g.26787
 CCGCTGGCCAGCAGAAGCCGTGACTGTTCTTCCCAGACCCAAATCAGCAGCCTCAGGAGC       c.3840
 P  L  A  S  R  S  R  D  C  S  S  Q  T  Q  I  S  S  L  R  S         p.1280

          .         .         .         .         .         .       g.26847
 GGGCTGGCCGTGCAGGCGGTGACTCAGCACACGCCCAGGGCCTCAGTAGGAAACAGGGAA       c.3900
 G  L  A  V  Q  A  V  T  Q  H  T  P  R  A  S  V  G  N  R  E         p.1300

          .         .         .         .         .         .       g.26907
 GGGAACGAAGTCGCACAGAAGTTTTCTGTCATCAGGCCCCAGACACCACCGCCCCAGACA       c.3960
 G  N  E  V  A  Q  K  F  S  V  I  R  P  Q  T  P  P  P  Q  T         p.1320

          .         .         .         .         .         .       g.26967
 CCGTCCTCATGCCTCACTCCCGTCTCTCCAGGAACTTCTGACGGCAGAAGGCAAGGCCAC       c.4020
 P  S  S  C  L  T  P  V  S  P  G  T  S  D  G  R  R  Q  G  H         p.1340

          .         .         .         .         .         .       g.27027
 AGAAGCCCTTCCCGTCCCCACCCCGGGGGCCACCCGCACTCCTCTCCGCTGGCTCCACAT       c.4080
 R  S  P  S  R  P  H  P  G  G  H  P  H  S  S  P  L  A  P  H         p.1360

          .         .         .         .         .         .       g.27087
 CCCATCTCAGGGGACCGCGCCCACTTCAGCAGGCGGTTCCTGAAACACTCGCCGCCTGGG       c.4140
 P  I  S  G  D  R  A  H  F  S  R  R  F  L  K  H  S  P  P  G         p.1380

          .         .         .         .         .         .       g.27147
 CCAAGCTTCCTGAACCAGACCCCAGCGGGTGAAGTGGTGGAAGTCGGAGACAGTGACGAT       c.4200
 P  S  F  L  N  Q  T  P  A  G  E  V  V  E  V  G  D  S  D  D         p.1400

          .         .         .         .         .         .       g.27207
 GAGCAGGAGGTGGCCTCCCATCAGGCCAACAGAAGCCCCCCACTGGACAGTGACCCCCCA       c.4260
 E  Q  E  V  A  S  H  Q  A  N  R  S  P  P  L  D  S  D  P  P         p.1420

          .         .         .         .         .         .       g.27267
 ATTCCAATTGACGACTGCTGCTGGCACATGGAGCCCCTCTCGCCAATTCCCATTGACCAC       c.4320
 I  P  I  D  D  C  C  W  H  M  E  P  L  S  P  I  P  I  D  H         p.1440

          .         .         .         .         .         .       g.27327
 TGGAACCTGGAGCGGACCGGCCCCCTGAGCACCAGCAGCCCCAGCCGCAGGATGAACGAG       c.4380
 W  N  L  E  R  T  G  P  L  S  T  S  S  P  S  R  R  M  N  E         p.1460

          .         .         .         .         .         .       g.27387
 GCCGCCGACAGCCGTGACTGTCGCTCCCCGGGACTCCTGGACACCACCCCCATCCGAGGA       c.4440
 A  A  D  S  R  D  C  R  S  P  G  L  L  D  T  T  P  I  R  G         p.1480

          .         .         .         .         .         .       g.27447
 AGCTGCACTACCCAGAGGAAATTGCAAGAGAAGTCCTCGGGCGCGGGCTCCCTGGGGAAT       c.4500
 S  C  T  T  Q  R  K  L  Q  E  K  S  S  G  A  G  S  L  G  N         p.1500

          .         .         .         .         .         .       g.27507
 AGCAGGCCGAGCTTTCTGAATTCGGCTCTGTGGGACGTTTGGGACGGGGAAGAGCAGAGG       c.4560
 S  R  P  S  F  L  N  S  A  L  W  D  V  W  D  G  E  E  Q  R         p.1520

          .         .         .         .         .         .       g.27567
 CCTCCAGAGACCCCTCCTCCGGCCCAGATGCCAAGCGCTGGTGGAGCTCAGAAGCCCGAA       c.4620
 P  P  E  T  P  P  P  A  Q  M  P  S  A  G  G  A  Q  K  P  E         p.1540

          .       | 13 .         .         .         .         .    g.31757
 GGGTTAGAGACACCCA | AAGGTGCTAATCGGAAGAAGAACTTGCCCCCCAAAGTGCCCATA    c.4680
 G  L  E  T  P  K |   G  A  N  R  K  K  N  L  P  P  K  V  P  I      p.1560

          .         .         .         .         .          | 14    g.33075
 ACGCCGATGCCACAGTATTCCATTATGGAGACGCCGGTGCTGAAGAAGGAACTGGATAG | G    c.4740
 T  P  M  P  Q  Y  S  I  M  E  T  P  V  L  K  K  E  L  D  R  |      p.1580

          .         .         .         .         .         .       g.33135
 TTTGGAGTCCGCCCTCTGCCTAAACGCCAGATGGTTCTGAAGCTGAAGGAGATATTCCAG       c.4800
 F  G  V  R  P  L  P  K  R  Q  M  V  L  K  L  K  E  I  F  Q         p.1600

          .         .         .         .         .         .       g.33195
 TACACTCACCAGACCCTGGACTCAGACTCCGAGGACGAGAGCCAGTCCTCACAGCCGCTG       c.4860
 Y  T  H  Q  T  L  D  S  D  S  E  D  E  S  Q  S  S  Q  P  L         p.1620

          .         .         .         .         .         .       g.33255
 TTGCAGGCGCCTCACTGCCAGACCCTCGCCTCCCAGACCTACAAGCCTTCAAGGGCAGGG       c.4920
 L  Q  A  P  H  C  Q  T  L  A  S  Q  T  Y  K  P  S  R  A  G         p.1640

          .         .         .         .         .         .       g.33315
 GTCCATGCCCAGCAGGAGGCCACCACAGGACCTGGGGCCCATAGGCCCAAGGGACCTGCT       c.4980
 V  H  A  Q  Q  E  A  T  T  G  P  G  A  H  R  P  K  G  P  A         p.1660

          .         .         .         .         .         .       g.33375
 AAGACCAAGGGCCCCCGACATCAAAGGAAGCATCATGAAAGCATCACACCCCCAAGCAGG       c.5040
 K  T  K  G  P  R  H  Q  R  K  H  H  E  S  I  T  P  P  S  R         p.1680

          .         .         .         .         .         .       g.33435
 TCGCCCACCAAGGAGGCACCTCCAGGCCTCAATGATGACGCCCAGATCCCAGCCTCTCAA       c.5100
 S  P  T  K  E  A  P  P  G  L  N  D  D  A  Q  I  P  A  S  Q         p.1700

          .         .         .         .         .    | 15    .    g.33898
 GAATCCGTGGCCACCTCTGTGGATGGCAGTGACAGCTCCTTGAGCTCACAGAG | TTCTTCC    c.5160
 E  S  V  A  T  S  V  D  G  S  D  S  S  L  S  S  Q  S  |  S  S      p.1720

          .         .         .         .         .         .       g.33958
 TCCTGTGAGTTTGGAGCGGCATTTGAGTCTGCAGGTGAAGAGGAGGGCGAGGGGGAGGTC       c.5220
 S  C  E  F  G  A  A  F  E  S  A  G  E  E  E  G  E  G  E  V         p.1740

          .         .         .         .         .         .       g.34018
 AGTGCCTCGCAGGCAGCCGTGCAGGCGGCGGACACAGACGAGGCGCTGAGGTGCTACATC       c.5280
 S  A  S  Q  A  A  V  Q  A  A  D  T  D  E  A  L  R  C  Y  I         p.1760

          .         .         .         .         .         .       g.34078
 CGCTCCAAGCCGGCCCTGTACCAGAAGGTGCTGCTGTACCAGCCCTTTGAGCTGCGGGAG       c.5340
 R  S  K  P  A  L  Y  Q  K  V  L  L  Y  Q  P  F  E  L  R  E         p.1780

          .         .         .         .         .         .       g.34138
 CTGCAGGCAGAGCTGAGGCAGAACGGCCTCCGTGTGTCCTCGCGCAGGCTGTTGGACTTC       c.5400
 L  Q  A  E  L  R  Q  N  G  L  R  V  S  S  R  R  L  L  D  F         p.1800

          .         .         .         .         .         .       g.34198
 CTGGACACCCACTGTATCACCTTCACCACTGCCGCCACCCGCAGGGAGAAGCTCCAGGGC       c.5460
 L  D  T  H  C  I  T  F  T  T  A  A  T  R  R  E  K  L  Q  G         p.1820

          .         .         .         .                           g.34243
 AGGAGGCGGCAGCCTCGGGGCAAGAAGAAGGTGGAGCGGAACTGA                      c.5505
 R  R  R  Q  P  R  G  K  K  K  V  E  R  N  X                        p.1834

          .         .         .         .         .         .       g.34303
 tggggccatcccgaccccaccccaacctgccatcagcagcccccacccccgccatttgca       c.*60

          .         .         .         .         .         .       g.34363
 gggaggacctgggacacccagcgtgggtcaggcctccacaggcatttctgggcctgggga       c.*120

          .         .         .         .         .         .       g.34423
 ccacatcagctctgcgctgtgatgatgaccacagcccaatccagggcttcctcctctggg       c.*180

          .         .         .         .         .         .       g.34483
 ctctgctttctagggtggcatttggagcatgtcacccactggatttacagactccagccc       c.*240

          .         .         .         .         .         .       g.34543
 cttcctctgtccgtgctcacagtgtgtctccctttttggttttctttttttttttctttt       c.*300

          .         .         .         .         .         .       g.34603
 tgagacagtcgtgctgtgtcacctaggctggagtgcagtggcacaatctcggctcactgc       c.*360

          .         .         .         .         .         .       g.34663
 aacctccgcctcccgggttcaagcaattctcctgcctcagcctcccagatagctgggact       c.*420

          .         .         .         .         .         .       g.34723
 acaggcacacgctgccacgcccagctgattttttatattttagtagaaacggggtttcac       c.*480

          .         .         .         .         .         .       g.34783
 catgttgctcaggctggtcacaaactccagagctcaggcaatccgcctgctgcggcctcc       c.*540

          .         .         .         .         .         .       g.34843
 caaagtgctgggatcacaggcgccagccactgcgcccggcccagtgtgtctcccttaacc       c.*600

          .         .         .         .         .         .       g.34903
 caagagggccctcagctgtcccagggggcagtgggccatcaccagctggccagggcatgg       c.*660

          .         .         .         .         .         .       g.34963
 cctattctgccacatttgccaccctctgagcccaccagtcctgggcacagctgccctaca       c.*720

          .         .         .         .         .         .       g.35023
 tgtctgtcctgagatggacgtcaggtccagcctgccccggcagcccgggcccgtcctcct       c.*780

          .         .         .         .         .         .       g.35083
 cagcactcaggccaaccccagccaccgccagcctgagaccaggtgtcctgaggctccctg       c.*840

          .         .         .         .         .         .       g.35143
 cactgccacagcccagatgcagttctcctgacccagccgtgctacccggacacttgtcat       c.*900

          .         .         .         .         .         .       g.35203
 tgttaccagcagtctccaaactggacagtgcacaagggcccagaacaactctgatgccac       c.*960

          .         .         .         .         .         .       g.35263
 cacaaaacaaacatgttcactagcggattccattctttgggttaaagctgcctccagcct       c.*1020

          .         .         .         .         .         .       g.35323
 caggagcagtgtggaggaagatgagggccaggaaagaaggaaaccttggtttctccatcc       c.*1080

          .         .         .         .         .         .       g.35383
 ttgtgaatgtcctcgtctgtttcaaatacagtgcagtcagttttatatgatgtgcaataa       c.*1140

          .         .                                               g.35404
 accaaaaaggctttattaaaa                                              c.*1161

 (downstream sequence)
Legend:
Nucleotide numbering (following the rules of the HGVS for a 'Coding DNA Reference Sequence') is indicated at the right of the sequence, counting the A of the ATG translation initiating Methionine as 1. Every 10th nucleotide is indicated by a "." above the sequence. The SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae) protein sequence is shown below the coding DNA sequence, with numbering indicated at the right starting with 1 for the translation initiating Methionine. Every 10th amino acid is shown in bold. The position of introns is indicated by a vertical line, splitting the two exons. The start of the first exon (transcription initiation site) is indicated by a '\', the end of the last exon (poly-A addition site) by a '/'. The exon number is indicated above the first nucleotide(s) of the exon. To aid the description of frame shift variants, all stop codons in the +1 frame are shown in bold while all stop codons in the +2 frame are underlined.

Powered by LOVD v.3.0 Build 11c
©2004-2014 Leiden University Medical Center