(used for variant description)
(last modified June 9, 2017)
This file was created to facilitate the description of sequence variants on transcript NM_001063.3 in the TF gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_013080.1, covering TF transcript NM_001063.3.
(upstream sequence)
g.5008
tggcaccg c.-301
. . . . . . g.5068
agcgagccgcgatgacaatggctgcattgtgcttcatgtcccttcccatcaacatttctg c.-241
. . . . . . g.5128
tgctggactccttccactcgcgggtcgtctccagagctcagaaaatgaggtgatcagtgg c.-181
. . . . . . g.5188
gacgagtaaggaaggggggttgggagaggggcgattgggcaacccggctgcacaaacacg c.-121
. . . . . . g.5248
ggaggtcaaagattgcgcccagcccgcccaggccgggaatggaataaagggacgcggggc c.-61
. . . . . . g.5308
gccggaggctgcacagaagcgagtccgactgtgctcgctgctcagcgccgcacccggaag c.-1
. . . . | 02 . . g.7296
ATGAGGCTCGCCGTGGGAGCCCTGCTGGTCTGCGCCGTCCTGG | GGCTGTGTCTGGCTGTC c.60
M R L A V G A L L V C A V L G | L C L A V p.20
. . . . . . g.7356
CCTGATAAAACTGTGAGATGGTGTGCAGTGTCGGAGCATGAGGCCACTAAGTGCCAGAGT c.120
P D K T V R W C A V S E H E A T K C Q S p.40
. . . . . . g.7416
TTCCGCGACCATATGAAAAGCGTCATTCCATCCGATGGTCCCAGTGTTGCTTGTGTGAAG c.180
F R D H M K S V I P S D G P S V A C V K p.60
. . . | 03 . . . g.12486
AAAGCCTCCTACCTTGATTGCATCAGGGCCATTGCG | GCAAACGAAGCGGATGCTGTGACA c.240
K A S Y L D C I R A I A | A N E A D A V T p.80
. . . . . . g.12546
CTGGATGCAGGTTTGGTGTATGATGCTTACCTGGCTCCCAATAACCTGAAGCCTGTGGTG c.300
L D A G L V Y D A Y L A P N N L K P V V p.100
. . | 04 . . . . g.13397
GCAGAGTTCTATGGGTCAAAAGAGG | ATCCACAGACTTTCTATTATGCTGTTGCTGTGGTG c.360
A E F Y G S K E D | P Q T F Y Y A V A V V p.120
. . . . . . g.13457
AAGAAGGATAGTGGCTTCCAGATGAACCAGCTTCGAGGCAAGAAGTCCTGCCACACGGGT c.420
K K D S G F Q M N Q L R G K K S C H T G p.140
. . . . . . g.13517
CTAGGCAGGTCCGCTGGGTGGAACATCCCCATAGGCTTACTTTACTGTGACTTACCTGAG c.480
L G R S A G W N I P I G L L Y C D L P E p.160
. . | 05 . . . . g.14268
CCACGTAAACCTCTTGAGAAAG | CAGTGGCCAATTTCTTCTCGGGCAGCTGTGCCCCTTGT c.540
P R K P L E K A | V A N F F S G S C A P C p.180
. . . . . . g.14328
GCGGATGGGACGGACTTCCCCCAGCTGTGTCAACTGTGTCCAGGGTGTGGCTGCTCCACC c.600
A D G T D F P Q L C Q L C P G C G C S T p.200
. . . | 06 . . . g.15174
CTTAACCAATACTTCGGCTACTCGGGAGCCTTCAA | GTGTCTGAAGGATGGTGCTGGGGAT c.660
L N Q Y F G Y S G A F K | C L K D G A G D p.220
. . . | 07 . . . g.15727
GTGGCCTTTGTCAAGCACTCGACTATATTTG | AGAACTTGGCAAACAAGGCTGACAGGGAC c.720
V A F V K H S T I F E | N L A N K A D R D p.240
. . . . . . g.15787
CAGTATGAGCTGCTTTGCCTGGACAACACCCGGAAGCCGGTAGATGAATACAAGGACTGC c.780
Q Y E L L C L D N T R K P V D E Y K D C p.260
. . . . . . g.15847
CACTTGGCCCAGGTCCCTTCTCATACCGTCGTGGCCCGAAGTATGGGCGGCAAGGAGGAC c.840
H L A Q V P S H T V V A R S M G G K E D p.280
. . . | 08 . . . g.16666
TTGATCTGGGAGCTTCTCAACCAGGCCCAG | GAACATTTTGGCAAAGACAAATCAAAAGAA c.900
L I W E L L N Q A Q | E H F G K D K S K E p.300
. . . . . . g.16726
TTCCAACTATTCAGCTCTCCTCATGGGAAGGACCTGCTGTTTAAGGACTCTGCCCACGGG c.960
F Q L F S S P H G K D L L F K D S A H G p.320
. . . . . . g.16786
TTTTTAAAAGTCCCCCCCAGGATGGATGCCAAGATGTACCTGGGCTATGAGTATGTCACT c.1020
F L K V P P R M D A K M Y L G Y E Y V T p.340
. . | 09 . . . g.18074
GCCATCCGGAATCTACGGGAAGGCACAT | GCCCAGAAGCCCCAACAGATGAATGCAAGCCT c.1080
A I R N L R E G T C | P E A P T D E C K P p.360
. . . . . . g.18134
GTGAAGTGGTGTGCGCTGAGCCACCACGAGAGGCTCAAGTGTGATGAGTGGAGTGTTAAC c.1140
V K W C A L S H H E R L K C D E W S V N p.380
. . . . . . g.18194
AGTGTAGGGAAAATAGAGTGTGTATCAGCAGAGACCACCGAAGACTGCATCGCCAAGATC c.1200
S V G K I E C V S A E T T E D C I A K I p.400
| 10 . . . . . . g.23106
ATG | AATGGAGAAGCTGATGCCATGAGCTTGGATGGAGGGTTTGTCTACATAGCGGGCAAG c.1260
M | N G E A D A M S L D G G F V Y I A G K p.420
. . . | 11. . . g.23765
TGTGGTCTGGTGCCTGTCTTGGCAGAAAACTACAATA | AGAGCGATAATTGTGAGGATACA c.1320
C G L V P V L A E N Y N K | S D N C E D T p.440
. | 12 . . . . . g.25195
CCAGAGGCAG | GGTATTTTGCTGTAGCAGTGGTGAAGAAATCAGCTTCTGACCTCACCTGG c.1380
P E A G | Y F A V A V V K K S A S D L T W p.460
. . . . . . g.25255
GACAATCTGAAAGGCAAGAAGTCCTGCCATACGGCAGTTGGCAGAACCGCTGGCTGGAAC c.1440
D N L K G K K S C H T A V G R T A G W N p.480
. . . . | 13 . . g.26910
ATCCCCATGGGCCTGCTCTACAATAAGATCAACCACTGCAGATTTG | ATGAATTTTTCAGT c.1500
I P M G L L Y N K I N H C R F D | E F F S p.500
. . . . . . g.26970
GAAGGTTGTGCCCCTGGGTCTAAGAAAGACTCCAGTCTCTGTAAGCTGTGTATGGGCTCA c.1560
E G C A P G S K K D S S L C K L C M G S p.520
. . . . . . g.27030
GGCCTAAACCTGTGTGAACCCAACAACAAAGAGGGATACTACGGCTACACAGGCGCTTTC c.1620
G L N L C E P N N K E G Y Y G Y T G A F p.540
| 14 . . . . . . g.29433
AG | GTGTCTGGTTGAGAAGGGAGATGTGGCCTTTGTGAAACACCAGACTGTCCCACAGAAC c.1680
R | C L V E K G D V A F V K H Q T V P Q N p.560
| 15. . . . . . g.34353
ACTGGGG | GAAAAAACCCTGATCCATGGGCTAAGAATCTGAATGAAAAAGACTATGAGTTG c.1740
T G G | K N P D P W A K N L N E K D Y E L p.580
. . . . . . g.34413
CTGTGCCTTGATGGTACCAGGAAACCTGTGGAGGAGTATGCGAACTGCCACCTGGCCAGA c.1800
L C L D G T R K P V E E Y A N C H L A R p.600
. . . . . . g.34473
GCCCCGAATCACGCTGTGGTCACACGGAAAGATAAGGAAGCTTGCGTCCACAAGATATTA c.1860
A P N H A V V T R K D K E A C V H K I L p.620
. | 16 . . . . . g.35964
CGTCAACAGCAG | CACCTATTTGGAAGCAACGTAACTGACTGCTCGGGCAACTTTTGTTTG c.1920
R Q Q Q | H L F G S N V T D C S G N F C L p.640
. . . . . . g.36024
TTCCGGTCGGAAACCAAGGACCTTCTGTTCAGAGATGACACAGTATGTTTGGCCAAACTT c.1980
F R S E T K D L L F R D D T V C L A K L p.660
. . . . . . g.36084
CATGACAGAAACACATATGAAAAATACTTAGGAGAAGAATATGTCAAGGCTGTTGGTAAC c.2040
H D R N T Y E K Y L G E E Y V K A V G N p.680
. . | 17 . . . g.37491
CTGAGAAAATGCTCCACCTCAT | CACTCCTGGAAGCCTGCACTTTCCGTAGACCTTAA c.2097
L R K C S T S S | L L E A C T F R R P X p.698
. . . . . . g.37551
aatctcagaggtagggctgccaccaaggtgaagatgggaacgcagatgatccatgagttt c.*60
. . . . . . g.37611
gccctggtttcactggcccaagtggtttgtgctaaccacgtctgtcttcacagctctgtg c.*120
. . . . . . g.37671
ttgccatgtgtgctgaacaaaaaataaaaattattattgattttatatttcaaaaactcc c.*180
. . . . . . g.37731
attctttcctaaatattttcaacaaaggatttctttatgcattctgcctaaatacctatg c.*240
. . . . . . g.37791
caactgagcccttccttctcagctcaagattcgtctggtctttccctacagctttgtgtg c.*300
. . . . . . g.37851
tgccatggccacatctcctgggtacagttcaaggagacatcttttctaaaagggtctgcg c.*360
. . g.37877
tgatcattaaaatataatcaaatgta c.*386
(downstream sequence)
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