(used for variant description)
(last modified April 8, 2021)
This file was created to facilitate the description of sequence variants on transcript NM_138554.4 in the TLR4 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000009.11, covering TLR4 transcript NM_138554.4.
(upstream sequence)
. . . . . g.5058
tagcttcctcttgctgtttctttagccactggtctgcaggcgttttcttcttctaact c.-241
. . . . . . g.5118
tcctctcctgtgacaaaagagataactattagagaaacaaaagtccagaatgctaaggtt c.-181
. . . . . . g.5178
gccgctttcacttcctctcaccctttagcccagaactgctttgaatacaccaattgctgt c.-121
. . . . . . g.5238
ggggcggctcgaggaagagaagacaccagtgcctcagaaactgctcggtcagacggtgat c.-61
. . . . . . g.5298
agcgagccacgcattcacagggccactgctgctcacagaagcagtgaggatgatgccagg c.-1
. . . . . . g.5358
ATGATGTCTGCCTCGCGCCTGGCTGGGACTCTGATCCCAGCCATGGCCTTCCTCTCCTGC c.60
M M S A S R L A G T L I P A M A F L S C p.20
. . . | 02 . . . g.9415
GTGAGACCAGAAAGCTGGGAGCCCTGCGTGGAG | GTGGTTCCTAATATTACTTATCAATGC c.120
V R P E S W E P C V E | V V P N I T Y Q C p.40
. . . . . . g.9475
ATGGAGCTGAATTTCTACAAAATCCCCGACAACCTCCCCTTCTCAACCAAGAACCTGGAC c.180
M E L N F Y K I P D N L P F S T K N L D p.60
. . . . . . g.9535
CTGAGCTTTAATCCCCTGAGGCATTTAGGCAGCTATAGCTTCTTCAGTTTCCCAGAACTG c.240
L S F N P L R H L G S Y S F F S F P E L p.80
. . | 03 . . . . g.13254
CAGGTGCTGGATTTATCCAG | GTGTGAAATCCAGACAATTGAAGATGGGGCATATCAGAGC c.300
Q V L D L S R | C E I Q T I E D G A Y Q S p.100
. . . . . . g.13314
CTAAGCCACCTCTCTACCTTAATATTGACAGGAAACCCCATCCAGAGTTTAGCCCTGGGA c.360
L S H L S T L I L T G N P I Q S L A L G p.120
. . . . . . g.13374
GCCTTTTCTGGACTATCAAGTTTACAGAAGCTGGTGGCTGTGGAGACAAATCTAGCATCT c.420
A F S G L S S L Q K L V A V E T N L A S p.140
. . . . . . g.13434
CTAGAGAACTTCCCCATTGGACATCTCAAAACTTTGAAAGAACTTAATGTGGCTCACAAT c.480
L E N F P I G H L K T L K E L N V A H N p.160
. . . . . . g.13494
CTTATCCAATCTTTCAAATTACCTGAGTATTTTTCTAATCTGACCAATCTAGAGCACTTG c.540
L I Q S F K L P E Y F S N L T N L E H L p.180
. . . . . . g.13554
GACCTTTCCAGCAACAAGATTCAAAGTATTTATTGCACAGACTTGCGGGTTCTACATCAA c.600
D L S S N K I Q S I Y C T D L R V L H Q p.200
. . . . . . g.13614
ATGCCCCTACTCAATCTCTCTTTAGACCTGTCCCTGAACCCTATGAACTTTATCCAACCA c.660
M P L L N L S L D L S L N P M N F I Q P p.220
. . . . . . g.13674
GGTGCATTTAAAGAAATTAGGCTTCATAAGCTGACTTTAAGAAATAATTTTGATAGTTTA c.720
G A F K E I R L H K L T L R N N F D S L p.240
. . . . . . g.13734
AATGTAATGAAAACTTGTATTCAAGGTCTGGCTGGTTTAGAAGTCCATCGTTTGGTTCTG c.780
N V M K T C I Q G L A G L E V H R L V L p.260
. . . . . . g.13794
GGAGAATTTAGAAATGAAGGAAACTTGGAAAAGTTTGACAAATCTGCTCTAGAGGGCCTG c.840
G E F R N E G N L E K F D K S A L E G L p.280
. . . . . . g.13854
TGCAATTTGACCATTGAAGAATTCCGATTAGCATACTTAGACTACTACCTCGATGATATT c.900
C N L T I E E F R L A Y L D Y Y L D D I p.300
. . . . . . g.13914
ATTGACTTATTTAATTGTTTGACAAATGTTTCTTCATTTTCCCTGGTGAGTGTGACTATT c.960
I D L F N C L T N V S S F S L V S V T I p.320
. . . . . . g.13974
GAAAGGGTAAAAGACTTTTCTTATAATTTCGGATGGCAACATTTAGAATTAGTTAACTGT c.1020
E R V K D F S Y N F G W Q H L E L V N C p.340
. . . . . . g.14034
AAATTTGGACAGTTTCCCACATTGAAACTCAAATCTCTCAAAAGGCTTACTTTCACTTCC c.1080
K F G Q F P T L K L K S L K R L T F T S p.360
. . . . . . g.14094
AACAAAGGTGGGAATGCTTTTTCAGAAGTTGATCTACCAAGCCTTGAGTTTCTAGATCTC c.1140
N K G G N A F S E V D L P S L E F L D L p.380
. . . . . . g.14154
AGTAGAAATGGCTTGAGTTTCAAAGGTTGCTGTTCTCAAAGTGATTTTGGGACAACCAGC c.1200
S R N G L S F K G C C S Q S D F G T T S p.400
. . . . . . g.14214
CTAAAGTATTTAGATCTGAGCTTCAATGGTGTTATTACCATGAGTTCAAACTTCTTGGGC c.1260
L K Y L D L S F N G V I T M S S N F L G p.420
. . . . . . g.14274
TTAGAACAACTAGAACATCTGGATTTCCAGCATTCCAATTTGAAACAAATGAGTGAGTTT c.1320
L E Q L E H L D F Q H S N L K Q M S E F p.440
. . . . . . g.14334
TCAGTATTCCTATCACTCAGAAACCTCATTTACCTTGACATTTCTCATACTCACACCAGA c.1380
S V F L S L R N L I Y L D I S H T H T R p.460
. . . . . . g.14394
GTTGCTTTCAATGGCATCTTCAATGGCTTGTCCAGTCTCGAAGTCTTGAAAATGGCTGGC c.1440
V A F N G I F N G L S S L E V L K M A G p.480
. . . . . . g.14454
AATTCTTTCCAGGAAAACTTCCTTCCAGATATCTTCACAGAGCTGAGAAACTTGACCTTC c.1500
N S F Q E N F L P D I F T E L R N L T F p.500
. . . . . . g.14514
CTGGACCTCTCTCAGTGTCAACTGGAGCAGTTGTCTCCAACAGCATTTAACTCACTCTCC c.1560
L D L S Q C Q L E Q L S P T A F N S L S p.520
. . . . . . g.14574
AGTCTTCAGGTACTAAATATGAGCCACAACAACTTCTTTTCATTGGATACGTTTCCTTAT c.1620
S L Q V L N M S H N N F F S L D T F P Y p.540
. . . . . . g.14634
AAGTGTCTGAACTCCCTCCAGGTTCTTGATTACAGTCTCAATCACATAATGACTTCCAAA c.1680
K C L N S L Q V L D Y S L N H I M T S K p.560
. . . . . . g.14694
AAACAGGAACTACAGCATTTTCCAAGTAGTCTAGCTTTCTTAAATCTTACTCAGAATGAC c.1740
K Q E L Q H F P S S L A F L N L T Q N D p.580
. . . . . . g.14754
TTTGCTTGTACTTGTGAACACCAGAGTTTCCTGCAATGGATCAAGGACCAGAGGCAGCTC c.1800
F A C T C E H Q S F L Q W I K D Q R Q L p.600
. . . . . . g.14814
TTGGTGGAAGTTGAACGAATGGAATGTGCAACACCTTCAGATAAGCAGGGCATGCCTGTG c.1860
L V E V E R M E C A T P S D K Q G M P V p.620
. . . . . . g.14874
CTGAGTTTGAATATCACCTGTCAGATGAATAAGACCATCATTGGTGTGTCGGTCCTCAGT c.1920
L S L N I T C Q M N K T I I G V S V L S p.640
. . . . . . g.14934
GTGCTTGTAGTATCTGTTGTAGCAGTTCTGGTCTATAAGTTCTATTTTCACCTGATGCTT c.1980
V L V V S V V A V L V Y K F Y F H L M L p.660
. . . . . . g.14994
CTTGCTGGCTGCATAAAGTATGGTAGAGGTGAAAACATCTATGATGCCTTTGTTATCTAC c.2040
L A G C I K Y G R G E N I Y D A F V I Y p.680
. . . . . . g.15054
TCAAGCCAGGATGAGGACTGGGTAAGGAATGAGCTAGTAAAGAATTTAGAAGAAGGGGTG c.2100
S S Q D E D W V R N E L V K N L E E G V p.700
. . . . . . g.15114
CCTCCATTTCAGCTCTGCCTTCACTACAGAGACTTTATTCCCGGTGTGGCCATTGCTGCC c.2160
P P F Q L C L H Y R D F I P G V A I A A p.720
. . . . . . g.15174
AACATCATCCATGAAGGTTTCCATAAAAGCCGAAAGGTGATTGTTGTGGTGTCCCAGCAC c.2220
N I I H E G F H K S R K V I V V V S Q H p.740
. . . . . . g.15234
TTCATCCAGAGCCGCTGGTGTATCTTTGAATATGAGATTGCTCAGACCTGGCAGTTTCTG c.2280
F I Q S R W C I F E Y E I A Q T W Q F L p.760
. . . . . . g.15294
AGCAGTCGTGCTGGTATCATCTTCATTGTCCTGCAGAAGGTGGAGAAGACCCTGCTCAGG c.2340
S S R A G I I F I V L Q K V E K T L L R p.780
. . . . . . g.15354
CAGCAGGTGGAGCTGTACCGCCTTCTCAGCAGGAACACTTACCTGGAGTGGGAGGACAGT c.2400
Q Q V E L Y R L L S R N T Y L E W E D S p.800
. . . . . . g.15414
GTCCTGGGGCGGCACATCTTCTGGAGACGACTCAGAAAAGCCCTGCTGGATGGTAAATCA c.2460
V L G R H I F W R R L R K A L L D G K S p.820
. . . . . . g.15474
TGGAATCCAGAAGGAACAGTGGGTACAGGATGCAATTGGCAGGAAGCAACATCTATCTGA c.2520
W N P E G T V G T G C N W Q E A T S I X p.839
. . . . . . g.15534
agaggaaaaataaaaacctcctgaggcatttcttgcccagctgggtccaacacttgttca c.*60
. . . . . . g.15594
gttaataagtattaaatgctgccacatgtcaggccttatgctaagggtgagtaattccat c.*120
. . . . . . g.15654
ggtgcactagatatgcagggctgctaatctcaaggagcttccagtgcagagggaataaat c.*180
. . . . . . g.15714
gctagactaaaatacagagtcttccaggtgggcatttcaaccaactcagtcaaggaaccc c.*240
. . . . . . g.15774
atgacaaagaaagtcatttcaactcttacctcatcaagttgaataaagacagagaaaaca c.*300
. . . . . . g.15834
gaaagagacattgttcttttcctgagtcttttgaatggaaattgtattatgttatagcca c.*360
. . . . . . g.15894
tcataaaaccattttggtagttttgactgaactgggtgttcactttttcctttttgattg c.*420
. . . . . . g.15954
aatacaatttaaattctacttgatgactgcagtcgtcaaggggctcctgatgcaagatgc c.*480
. . . . . . g.16014
cccttccattttaagtctgtctccttacagaggttaaagtctagtggctaattcctaagg c.*540
. . . . . . g.16074
aaacctgattaacacatgctcacaaccatcctggtcattctcgagcatgttctatttttt c.*600
. . . . . . g.16134
aactaatcacccctgatatatttttatttttatatatccagttttcatttttttacgtct c.*660
. . . . . . g.16194
tgcctataagctaatatcataaataaggttgtttaagacgtgcttcaaatatccatatta c.*720
. . . . . . g.16254
accactatttttcaaggaagtatggaaaagtacactctgtcactttgtcactcgatgtca c.*780
. . . . . . g.16314
ttccaaagttattgcctactaagtaatgactgtcatgaaagcagcattgaaataatttgt c.*840
. . . . . . g.16374
ttaaagggggcactcttttaaacgggaagaaaatttccgcttcctggtcttatcatggac c.*900
. . . . . . g.16434
aatttgggctagaggcaggaaggaagtgggatgacctcaggaggtcaccttttcttgatt c.*960
. . . . . . g.16494
ccagaaacatatgggctgataaacccggggtgacctcatgaaatgagttgcagcagaagt c.*1020
. . . . . . g.16554
ttatttttttcagaacaagtgatgtttgatggacctctgaatctctttagggagacacag c.*1080
. . . . . . g.16614
atggctgggatccctcccctgtacccttctcactgccaggagaactacgtgtgaaggtat c.*1140
. . . . . . g.16674
tcaaggcagggagtatacattgctgtttcctgttgggcaatgctccttgaccacattttg c.*1200
. . . . . . g.16734
ggaagagtggatgttatcattgagaaaacaatgtgtctggaattaatggggttcttataa c.*1260
. . . . . . g.16794
agaaggttcccagaaaagaatgttcatccagcctcctcagaaacagaacattcaagaaaa c.*1320
. . . . . . g.16854
ggacaatcaggatgtcatcagggaaatgaaaataaaaaccacaatgagatatcaccttat c.*1380
. . . . . . g.16914
accaggtagaatggctactataaaaaaatgaagtgtcatcaaggatatagagaaattgga c.*1440
. . . . . . g.16974
acccttcttcactgctggagggaatggaaaatggtgtagccgttatgaaaaacagtacgg c.*1500
. . . . . . g.17034
aggtttctcaaaaattaaaaatagaactgctatatgatccagcaatctcacttctgtata c.*1560
. . . . . . g.17094
tatacccaaaataattgaaatcagaatttcaagaaaatatttacactcccatgttcattg c.*1620
. . . . . . g.17154
tggcactcttcacaatcactgtttccaaagttatggaaacaacccaaatttccattgaaa c.*1680
. . . . . . g.17214
aataaatggacaaagaaaatgtgcatatacgtacaatgggatattattcagcctaaaaaa c.*1740
. . . . . . g.17274
agggggaatcctgttatttatgacaacatgaataaacccggaggccattatgctatgtaa c.*1800
. . . . . . g.17334
aatgagcaagtaacagaaagacaaatactgcctgatttcatttatatgaggttctaaaat c.*1860
. . . . . . g.17394
agtcaaactcatagaagcagagaatagaacagtggttcctagggaaaaggaggaagggag c.*1920
. . . . . . g.17454
aaatgaggaaatagggagttgtctaattggtataaaattatagtatgcaagatgaattag c.*1980
. . . . . . g.17514
ctctaaagatcagctgtatagcagagttcgtataatgaacaatactgtattatgcactta c.*2040
. . . . . . g.17574
acattttgttaagagggtacctctcatgttaagtgttcttaccatatacatatacacaag c.*2100
. . . . . . g.17634
gaagcttttggaggtgatggatatatttattaccttgattgtggtgatggtttgacaggt c.*2160
. . . . . . g.17694
atgtgactatgtctaaactcatcaaattgtatacattaaatatatgcagttttataatat c.*2220
. . . . . . g.17754
caattatgtctgaatgaagctataaaaaagaaaagacaacaaaattcagttgtcaaaact c.*2280
. . . . . . g.17814
ggaaatatgaccacagtcagaagtgtttgttactgagtgtttcagagtgtgtttggtttg c.*2340
. . . . . . g.17874
agcaggtctagggtgattgaacatccctgggtgtgtttccatgtctcatgtactagtgaa c.*2400
. . . . . . g.17934
agtagatgtgtgcatttgtgcacatatccctatgtatccctatcagggctgtgtgtattt c.*2460
. . . . . . g.17994
gaaagtgtgtgtgtccgcatgatcatatctgtatagaagagagtgtgattatatttcttg c.*2520
. . . . . . g.18054
aagaatacatccatttgaaatggatgtctatggctgtttgagatgagttctctactcttg c.*2580
. . . . . . g.18114
tgcttgtacagtagtctccccttatcccttatgcttggtggatacgttcttagaccccaa c.*2640
. . . . . . g.18174
gtggatctctgagaccgcagatggtaccaaacctcatatatgcaatattttttcctatac c.*2700
. . . . . . g.18234
ataaatacctaagataaagttcatcttctgaattaggcacagtaagagattaacaataac c.*2760
. . . . . . g.18294
taacaataaaattgaatagttataataatatattgtaataaaagttatgtgaatgtgatc c.*2820
. . g.18317
tctttctttctctctctcaaaat c.*2843
(downstream sequence)
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