(used for variant description)
(last modified March 22, 2021)
This file was created to facilitate the description of sequence variants on transcript NM_003839.3 in the TNFRSF11A gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000018.9, covering TNFRSF11A transcript NM_003839.3.
(upstream sequence)
g.5006
ggcagc c.-61
. . . . . . g.5066
cgcgcccgctgggccacagaggccgctgaggccgcggcgcccgccagcctgtcccgcgcc c.-1
. . . . . . g.5126
ATGGCCCCGCGCGCCCGGCGGCGCCGCCCGCTGTTCGCGCTGCTGCTGCTCTGCGCGCTG c.60
M A P R A R R R R P L F A L L L L C A L p.20
. | 02 . . . . . g.27926
CTCGCCCGGCTGCAG | GTGGCTTTGCAGATCGCTCCTCCATGTACCAGTGAGAAGCATTAT c.120
L A R L Q | V A L Q I A P P C T S E K H Y p.40
. . . | 03. . . g.29548
GAGCATCTGGGACGGTGCTGTAACAAATGTGAACCAG | GAAAGTACATGTCTTCTAAATGC c.180
E H L G R C C N K C E P G | K Y M S S K C p.60
. . . . . . g.29608
ACTACTACCTCTGACAGTGTATGTCTGCCCTGTGGCCCGGATGAATACTTGGATAGCTGG c.240
T T T S D S V C L P C G P D E Y L D S W p.80
. . . . | 04 . . g.34121
AATGAAGAAGATAAATGCTTGCTGCATAAAGTTTGTGATACAG | GCAAGGCCCTGGTGGCC c.300
N E E D K C L L H K V C D T G | K A L V A p.100
. . . . . . g.34181
GTGGTCGCCGGCAACAGCACGACCCCCCGGCGCTGCGCGTGCACGGCTGGGTACCACTGG c.360
V V A G N S T T P R R C A C T A G Y H W p.120
. . . . . . g.34241
AGCCAGGACTGCGAGTGCTGCCGCCGCAACACCGAGTGCGCGCCGGGCCTGGGCGCCCAG c.420
S Q D C E C C R R N T E C A P G L G A Q p.140
| 05. . . . . . g.38014
CACCCGT | TGCAGCTCAACAAGGACACAGTGTGCAAACCTTGCCTTGCAGGCTACTTCTCT c.480
H P L | Q L N K D T V C K P C L A G Y F S p.160
. . . . | 06 . . g.39687
GATGCCTTTTCCTCCACGGACAAATGCAGACCCTGGACCAA | CTGTACCTTCCTTGGAAAG c.540
D A F S S T D K C R P W T N | C T F L G K p.180
. . . . . . g.39747
AGAGTAGAACATCATGGGACAGAGAAATCCGATGCGGTTTGCAGTTCTTCTCTGCCAGCT c.600
R V E H H G T E K S D A V C S S S L P A p.200
. | 07 . . . . . g.41437
AGAAAACCACCAAATG | AACCCCATGTTTACTTGCCCGGTTTAATAATTCTGCTTCTCTTC c.660
R K P P N E | P H V Y L P G L I I L L L F p.220
. . . . . . g.41497
GCGTCTGTGGCCCTGGTGGCTGCCATCATCTTTGGCGTTTGCTATAGGAAAAAAGGGAAA c.720
A S V A L V A A I I F G V C Y R K K G K p.240
. | 08 . . . . . g.46471
GCACTCACAG | CTAATTTGTGGCACTGGATCAATGAGGCTTGTGGCCGCCTAAGTGGAGAT c.780
A L T A | N L W H W I N E A C G R L S G D p.260
| 09 . . . . . . g.48471
AAG | GAGTCCTCAGGTGACAGTTGTGTCAGTACACACACGGCAAACTTTGGTCAGCAGGGA c.840
K | E S S G D S C V S T H T A N F G Q Q G p.280
. . . . . . g.48531
GCATGTGAAGGTGTCTTACTGCTGACTCTGGAGGAGAAGACATTTCCAGAAGATATGTGC c.900
A C E G V L L L T L E E K T F P E D M C p.300
. . . . . . g.48591
TACCCAGATCAAGGTGGTGTCTGTCAGGGCACATGTGTAGGAGGTGGTCCCTACGCACAA c.960
Y P D Q G G V C Q G T C V G G G P Y A Q p.320
. . . . . . g.48651
GGCGAAGATGCCAGGATGCTCTCATTGGTCAGCAAGACCGAGATAGAGGAAGACAGCTTC c.1020
G E D A R M L S L V S K T E I E E D S F p.340
. . . . . . g.48711
AGACAGATGCCCACAGAAGATGAATACATGGACAGGCCCTCCCAGCCCACAGACCAGTTA c.1080
R Q M P T E D E Y M D R P S Q P T D Q L p.360
. . . . . . g.48771
CTGTTCCTCACTGAGCCTGGAAGCAAATCCACACCTCCTTTCTCTGAACCCCTGGAGGTG c.1140
L F L T E P G S K S T P P F S E P L E V p.380
. . . . . . g.48831
GGGGAGAATGACAGTTTAAGCCAGTGCTTCACGGGGACACAGAGCACAGTGGGTTCAGAA c.1200
G E N D S L S Q C F T G T Q S T V G S E p.400
. . . . . . g.48891
AGCTGCAACTGCACTGAGCCCCTGTGCAGGACTGATTGGACTCCCATGTCCTCTGAAAAC c.1260
S C N C T E P L C R T D W T P M S S E N p.420
. . . . . . g.48951
TACTTGCAAAAAGAGGTGGACAGTGGCCATTGCCCGCACTGGGCAGCCAGCCCCAGCCCC c.1320
Y L Q K E V D S G H C P H W A A S P S P p.440
. . . . . . g.49011
AACTGGGCAGATGTCTGCACAGGCTGCCGGAACCCTCCTGGGGAGGACTGTGAACCCCTC c.1380
N W A D V C T G C R N P P G E D C E P L p.460
. . . . . . g.49071
GTGGGTTCCCCAAAACGTGGACCCTTGCCCCAGTGCGCCTATGGCATGGGCCTTCCCCCT c.1440
V G S P K R G P L P Q C A Y G M G L P P p.480
. . . . . . g.49131
GAAGAAGAAGCCAGCAGGACGGAGGCCAGAGACCAGCCCGAGGATGGGGCTGATGGGAGG c.1500
E E E A S R T E A R D Q P E D G A D G R p.500
. . . . . . g.49191
CTCCCAAGCTCAGCGAGGGCAGGTGCCGGGTCTGGAAGCTCCCCTGGTGGCCAGTCCCCT c.1560
L P S S A R A G A G S G S S P G G Q S P p.520
| 10. . . . . . g.64517
GCATCTG | GAAATGTGACTGGAAACAGTAACTCCACGTTCATCTCCAGCGGGCAGGTGATG c.1620
A S G | N V T G N S N S T F I S S G Q V M p.540
. . . . . . g.64577
AACTTCAAGGGCGACATCATCGTGGTCTACGTCAGCCAGACCTCGCAGGAGGGCGCGGCG c.1680
N F K G D I I V V Y V S Q T S Q E G A A p.560
. . . . . . g.64637
GCGGCTGCGGAGCCCATGGGCCGCCCGGTGCAGGAGGAGACCCTGGCGCGCCGAGACTCC c.1740
A A A E P M G R P V Q E E T L A R R D S p.580
. . . . . . g.64697
TTCGCGGGGAACGGCCCGCGCTTCCCGGACCCGTGCGGCGGCCCCGAGGGGCTGCGGGAG c.1800
F A G N G P R F P D P C G G P E G L R E p.600
. . . . . g.64748
CCGGAGAAGGCCTCGAGGCCGGTGCAGGAGCAAGGCGGGGCCAAGGCTTGA c.1851
P E K A S R P V Q E Q G G A K A X p.616
. . . . . . g.64808
gcgccccccatggctgggagcccgaagctcggagccagggctcgcgagggcagcaccgca c.*60
. . . . . . g.64868
gcctctgccccagccccggccacccagggatcgatcggtacagtcgaggaagaccacccg c.*120
. . . . . . g.64928
gcattctctgcccactttgccttccaggaaatgggcttttcaggaagtgaattgatgagg c.*180
. . . . . . g.64988
actgtccccatgcccacggatgctcagcagcccgccgcactggggcagatgtctcccctg c.*240
. . . . . . g.65048
ccactcctcaaactcgcagcagtaatttgtggcactatgacagctatttttatgactatc c.*300
. . . . . . g.65108
ctgttctgtgggggggggggtctgttttccccccatatttgtattccttttcataacttt c.*360
. . . . . . g.65168
tcttgatatctttcctccctcttttttaatgtaaaggttttctcaaaaattctcctaaag c.*420
. . . . . . g.65228
gtgagggtctctttcttttctcttttccttttttttttctttttttggcaacctggctct c.*480
. . . . . . g.65288
ggcccaggctagagtgcagtggtgcgattatagcccggtgcagcctctaactcctgggct c.*540
. . . . . . g.65348
caagcaatccaagtgatcctcccacctcaaccttcggagtagctgggatcacagctgcag c.*600
. . . . . . g.65408
gccacgcccagcttcctccccccgactccccccccagagacacggtcccaccatgttacc c.*660
. . . . . . g.65468
cagcctggtctcaaactccccagctaaagcagtcctccagcctcggcctcccaaagtact c.*720
. . . . . . g.65528
gggattacaggcgtgagcccccacgctggcctgctttacgtattttcttttgtgcccctg c.*780
. . . . . . g.65588
ctcacagtgttttagagatggctttcccagtgtgtgttcattgtaaacacttttgggaaa c.*840
. . . . . . g.65648
gggctaaacatgtgaggcctggagatagttgctaagttgctaggaacatgtggtgggact c.*900
. . . . . . g.65708
ttcatattctgaaaaatgttctatattctcatttttctaaaagaaagaaaaaaggaaacc c.*960
. . . . . . g.65768
cgatttatttctcctgaatctttttaagtttgtgtcgttccttaagcagaactaagctca c.*1020
. . . . . . g.65828
gtatgtgaccttacccgctaggtggttaatttatccatgctggcagaggcactcaggtac c.*1080
. . . . . . g.65888
ttggtaagcaaatttctaaaactccaagttgctgcagcttggcattcttcttattctaga c.*1140
. . . . . . g.65948
ggtctctctggaaaagatggagaaaatgaacaggacatggggctcctggaaagaaagggc c.*1200
. . . . . . g.66008
ccgggaagttcaaggaagaataaagttgaaattttaatttgcattttttttgtctagata c.*1260
. . . . . . g.66068
agaatagcgtgaatagatcctcttttattcgtaaataatcgtgcatctgtgggttagcct c.*1320
. . . . . . g.66128
tgtagaagtggaaaacattccattttccaatgcatttaaatgtaaagccaaatctgcatg c.*1380
. . . . . . g.66188
ttgtgaatttaagaaaacttattatcctaaaggtgcctttctcttggcatcatcccgctt c.*1440
. . . . . . g.66248
gtgagaagcctagaggacgctccaggtggaaggaaatcccctgggtggttttatcttttg c.*1500
. . . . . . g.66308
ttacccagtgagcactggttccccgcaaatactggggaaaagcaaaaatacacaagcaag c.*1560
. . . . . . g.66368
ttaaaattaattttgcacatctgggaggttataaaagaaagcactaatagtagtcactgc c.*1620
. . . . . . g.66428
ccagactttactggccacaaatgcccagctgaagagcatgactgtggatcactggttttt c.*1680
. . . . . . g.66488
ccctcctgctggaaatgctggggtggtagcggtcgattaggattttcagtggagaagcac c.*1740
. . . . . . g.66548
aggacagttctgtaatttatgggactccttagccaacataaagaactgcaggaaataact c.*1800
. . . . . . g.66608
gcacagccaggaggatccgttggtgggaatttaccgtcattcctgcccttttatttaaca c.*1860
. . . . . . g.66668
tcatccacagagagatgttatacaaatggaggaaaccattataccttttgatatggaata c.*1920
. . . . . . g.66728
tattacagagttacagttcacaaagtagaatgctgagctgaaaacccgagtttctgctgt c.*1980
. . . . . . g.66788
gactgtcatctcactgagcacttcgcttttctttgcttttattttttccttctataaaaa c.*2040
. . . . . . g.66848
ggcaataatgataatttataatagtttccctacccagagatattagaagtatgctacagt c.*2100
. . . . . . g.66908
gaatgttaaagtaccttgagatccttaaatcaaaggtgctatatacataagtaagactct c.*2160
. . . . . . g.66968
actttcagaaaaaggtaatattatttcctgcactgatccctactaattctatattgatcc c.*2220
. . . . . . g.67028
aaaggcaactcaatgctaaaaaatgtatagaaaatataagtctgtgtctgtgtactgtag c.*2280
. . . . . . g.67088
agatgtatgtgacaagtgtaaacaaaatgaactgaagcagtaatgaacagttattagggg c.*2340
. . . . . . g.67148
gaacatgataaagagattatattaagcttatgtttcaccataaaatcctttttatggctt c.*2400
. . . . . . g.67208
actaaaaccgagctcactgtaaaatcatgatccaacttattgctaatctttatgatatgc c.*2460
. . . . . . g.67268
ttattcctaatctttatggtatggtgtcaaccgttcatttgtatcttattgctcattccc c.*2520
. . . . . . g.67328
tggaccacagactagggacagaaaatacttgctttaataatatatatgctgttgatttca c.*2580
. . . . . . g.67388
caaaaatttattaaaatacagcctgggtacccagtgaaagagctgaaatggaaatggagt c.*2640
. . . g.67424
atcatgtttcctactcacattttactcagctgtcgg c.*2676
(downstream sequence)
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