(used for variant description)
(last modified November 26, 2020)
This file was created to facilitate the description of sequence variants on transcript NM_012210.3 in the TRIM32 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_011619.1, covering TRIM32 transcript NM_012210.3.
(upstream sequence)
. . . . g.5041
ggtgctcaacggcgcgtgcgcagagggaggcaggcgggtgg c.-121
. . . . | 02 . g.15381
gctgccggcggtggactcgtcggagccgcgggcggtcag | caggaatttgaccctctaggg c.-61
. . . . . . g.15441
catgaatactgtgctgttcagttctgagctgtgctagcaatacccttcaaaggaagagca c.-1
. . . . . . g.15501
ATGGCTGCAGCAGCAGCTTCTCACCTGAACCTGGATGCCCTCCGGGAAGTGCTAGAATGC c.60
M A A A A A S H L N L D A L R E V L E C p.20
. . . . . . g.15561
CCCATCTGCATGGAGTCCTTCACAGAAGAGCAGCTGCGTCCCAAGCTTCTGCACTGTGGC c.120
P I C M E S F T E E Q L R P K L L H C G p.40
. . . . . . g.15621
CATACCATCTGCCGCCAGTGCCTGGAGAAGCTATTGGCCAGTAGCATCAATGGTGTCCGC c.180
H T I C R Q C L E K L L A S S I N G V R p.60
. . . . . . g.15681
TGTCCCTTTTGCAGCAAGATTACCCGCATAACCAGCTTGACCCAGCTGACAGACAATCTG c.240
C P F C S K I T R I T S L T Q L T D N L p.80
. . . . . . g.15741
ACAGTGCTAAAGATCATTGATACAGCTGGGCTCAGCGAGGCTGTGGGGCTGCTCATGTGT c.300
T V L K I I D T A G L S E A V G L L M C p.100
. . . . . . g.15801
CGGTCCTGTGGGCGGCGTCTGCCCCGGCAATTCTGCCGGAGCTGTGGTTTGGTGTTATGT c.360
R S C G R R L P R Q F C R S C G L V L C p.120
. . . . . . g.15861
GAGCCCTGCCGGGAGGCAGACCATCAGCCTCCTGGCCACTGTACACTCCCTGTCAAAGAA c.420
E P C R E A D H Q P P G H C T L P V K E p.140
. . . . . . g.15921
GCAGCTGAGGAGCGGCGTCGGGACTTTGGAGAGAAGTTAACTCGTCTGCGGGAACTTATG c.480
A A E E R R R D F G E K L T R L R E L M p.160
. . . . . . g.15981
GGGGAGCTGCAGCGGCGGAAGGCAGCCTTGGAAGGTGTCTCCAAGGACCTTCAGGCAAGG c.540
G E L Q R R K A A L E G V S K D L Q A R p.180
. . . . . . g.16041
TATAAAGCAGTTCTCCAGGAGTATGGGCATGAGGAGCGCAGGGTCCAGGATGAGCTGGCT c.600
Y K A V L Q E Y G H E E R R V Q D E L A p.200
. . . . . . g.16101
CGCTCTCGGAAGTTCTTCACAGGCTCTTTGGCTGAAGTTGAGAAGTCCAATAGTCAAGTG c.660
R S R K F F T G S L A E V E K S N S Q V p.220
. . . . . . g.16161
GTAGAGGAGCAGAGTTACCTGCTTAACATTGCAGAGGTGCAGGCTGTGTCTCGCTGTGAC c.720
V E E Q S Y L L N I A E V Q A V S R C D p.240
. . . . . . g.16221
TACTTCCTGGCCAAGATCAAGCAGGCAGATGTAGCACTACTGGAGGAGACAGCTGATGAG c.780
Y F L A K I K Q A D V A L L E E T A D E p.260
. . . . . . g.16281
GAGGAGCCAGAGCTCACTGCCAGCTTGCCTCGGGAGCTCACCCTGCAAGATGTGGAGCTC c.840
E E P E L T A S L P R E L T L Q D V E L p.280
. . . . . . g.16341
CTTAAGGTAGGTCATGTTGGCCCCCTCCAAATTGGACAAGCTGTTAAGAAGCCCCGGACA c.900
L K V G H V G P L Q I G Q A V K K P R T p.300
. . . . . . g.16401
GTTAACGTGGAAGATTCCTGGGCCATGGAGGCCACAGCGTCTGCTGCCTCTACCTCTGTT c.960
V N V E D S W A M E A T A S A A S T S V p.320
. . . . . . g.16461
ACTTTTAGAGAGATGGACATGAGCCCGGAGGAAGTGGTTGCCAGCCCTAGGGCCTCACCT c.1020
T F R E M D M S P E E V V A S P R A S P p.340
. . . . . . g.16521
GCTAAACAGCGGGGTCCTGAGGCAGCCTCCAATATCCAGCAGTGCCTCTTTCTCAAGAAG c.1080
A K Q R G P E A A S N I Q Q C L F L K K p.360
. . . . . . g.16581
ATGGGGGCCAAAGGCAGCACTCCAGGAATGTTCAATCTTCCAGTCAGTCTCTACGTGACC c.1140
M G A K G S T P G M F N L P V S L Y V T p.380
. . . . . . g.16641
AGTCAAGGTGAAGTACTAGTCGCTGACCGTGGTAACTATCGTATACAAGTCTTTACCCGC c.1200
S Q G E V L V A D R G N Y R I Q V F T R p.400
. . . . . . g.16701
AAAGGCTTTTTGAAGGAAATCCGCCGCAGCCCCAGTGGCATTGATAGCTTTGTGCTAAGC c.1260
K G F L K E I R R S P S G I D S F V L S p.420
. . . . . . g.16761
TTCCTTGGGGCAGATCTACCCAACCTCACTCCTCTCTCAGTGGCAATGAACTGCCAGGGG c.1320
F L G A D L P N L T P L S V A M N C Q G p.440
. . . . . . g.16821
CTGATTGGTGTGACTGACAGCTATGATAACTCCCTCAAGGTATATACCTTGGATGGCCAC c.1380
L I G V T D S Y D N S L K V Y T L D G H p.460
. . . . . . g.16881
TGCGTGGCCTGTCACAGGAGCCAGCTGAGCAAACCATGGGGTATCACAGCCTTGCCATCT c.1440
C V A C H R S Q L S K P W G I T A L P S p.480
. . . . . . g.16941
GGCCAGTTTGTAGTAACCGATGTGGAAGGTGGAAAGCTTTGGTGTTTCACAGTTGATCGA c.1500
G Q F V V T D V E G G K L W C F T V D R p.500
. . . . . . g.17001
GGATCAGGGGTGGTCAAATACAGCTGCCTATGTAGTGCTGTGCGGCCCAAATTTGTCACC c.1560
G S G V V K Y S C L C S A V R P K F V T p.520
. . . . . . g.17061
TGTGATGCTGAGGGCACCGTCTACTTCACCCAGGGCTTAGGCCTCAATCTGGAGAATCGG c.1620
C D A E G T V Y F T Q G L G L N L E N R p.540
. . . . . . g.17121
CAGAATGAGCACCACCTGGAGGGTGGCTTTTCCATTGGCTCTGTAGGCCCTGATGGGCAG c.1680
Q N E H H L E G G F S I G S V G P D G Q p.560
. . . . . . g.17181
CTGGGTCGCCAGATTAGCCACTTCTTCTCGGAGAATGAGGATTTCCGCTGCATTGCTGGC c.1740
L G R Q I S H F F S E N E D F R C I A G p.580
. . . . . . g.17241
ATGTGTGTGGATGCTCGTGGTGATCTCATCGTGGCTGACAGTAGTCGCAAGGAAATTCTC c.1800
M C V D A R G D L I V A D S S R K E I L p.600
. . . . . . g.17301
CATTTTCCTAAGGGTGGGGGCTATAGTGTCCTTATTCGAGAGGGACTTACCTGTCCGGTG c.1860
H F P K G G G Y S V L I R E G L T C P V p.620
. . . . . . g.17361
GGCATAGCCCTAACTCCTAAGGGGCAGCTGCTGGTCTTGGACTGTTGGGATCATTGCATC c.1920
G I A L T P K G Q L L V L D C W D H C I p.640
. . . . g.17403
AAGATCTACAGCTACCATCTGAGAAGATATTCCACCCCATAG c.1962
K I Y S Y H L R R Y S T P X p.653
. . . . . . g.17463
gggatgagaaattatcagtttcttctgctcccaagccaacttcccttcccttagttcttg c.*60
. . . . . . g.17523
gttgttagtggcacatgcagaatagactcagcctatgtcctgattccagctgggtagttc c.*120
. . . . . . g.17583
tagaacttcagaagctccatcttttaatgtttttatttgttatgtccccctccccgcttc c.*180
. . . . . . g.17643
ccacctaaatttagagctttaaaagatgcactgcccaaataggacacacgatggtgttag c.*240
. . . . . . g.17703
ctgaagtttgattagcaattaggcacttccaaggctttagtagagagagccactttagcc c.*300
. . . . . . g.17763
ctttgtgccatgtttgaaatttgcccttgtattaaatccttgattttttcccatttggct c.*360
. . . . . . g.17823
ttgatgcccttgatccattgtttccttcctactataatgtgcttcatctgtgacactttc c.*420
. . . . . . g.17883
tcttgaactctgattggattcactgtgcatgcttcagtgggatctgctccacctttcagt c.*480
. . . . . . g.17943
gacatttaagacatcatattcccgtaacattatgtctcagtctgatcgtctttaccagta c.*540
. . . . . . g.18003
tgaaagtcattcatttagtgctaccaaaggggatacacaagccctttaggaagcagtacc c.*600
. . . . . . g.18063
tctcgcctggaggatctgtgccatcttggattgagaattgcagatgtgacagaatggatt c.*660
. . . . . . g.18123
gaccctagttggttggtattgatgacttcagcctggaaattgcttgccttttaaagaagc c.*720
. . . . . . g.18183
atatatgggttggaattatgccaaagcataggaagctgggaataagcaaacaaatgctga c.*780
. . . . . . g.18243
tatagtcagcaaatttggatagtctctagggctcatcatttttcatactacctctctctt c.*840
. . . . . . g.18303
ctggcctgtgtctaaggaattgtacaacataggccagggccaacaaagtggagaggtgga c.*900
. . . . . . g.18363
cacattttcatgttcattactaaaacaaacagcaaaactattggtttgttattctgtgtt c.*960
. . . . . . g.18423
ttcctcaagtcagtacatactatttggtttcaggatttctttccatttctctatcaagca c.*1020
. . . . . . g.18483
ttaaataattgagaactgtttcttcatctctggtgttcatgtcttttaattaaatacgga c.*1080
. . . . . . g.18543
attttggagatgataagagggataacctgcgctatgccattttgcttccttatctcactg c.*1140
. . . . . . g.18603
tgttctttcagagtgtagatatctacccaggtcaaaattcagccaaaagcactattatgt c.*1200
. . . . . . g.18663
aaagataataatccaaatctttctcccaaatacatgtgtacagaatcatcccccaaggtt c.*1260
. . . . . . g.18723
tagagtcaccaataccctattctgagcttctgctgtatgttttatgtttataattacagt c.*1320
. . . . . . g.18783
tcacaaaaaggaagttagtcttgtttttaagatcagaagtgggtgagaggacctgtgatg c.*1380
. . . . . . g.18843
aggttcctgagggtttggtgtttactaagtaatatatcttactctaggtgcagggctgat c.*1440
. . . . . . g.18903
ggcaagccaaagagcaactgccttactttgatgtaaacaaaatttgctaaactgagctgc c.*1500
. . . . . . g.18963
tcaaaattgtttttatggtagtagtgtttctttggattgtatcataatagctgccaaagg c.*1560
. . . g.18999
ataggtaaagaggtcattaaaatgatgttgaactag c.*1596
(downstream sequence)
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