(used for variant description)
(last modified May 25, 2020)
This file was created to facilitate the description of sequence variants on transcript NM_001005207.2 in the TRIM37 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_009298.1, covering TRIM37 transcript NM_001005207.2.
(upstream sequence)
. . g.5024
acagcgtcctgcgcgcatgcgctt c.-421
. . . . . . g.5084
cgcagcttctctcgccgccgcgcccccagctgctctggttacggttggtgtttgcgaatt c.-361
. . . . . . g.5144
ctctgcggcaccttcttcgctgaactccaccgtcagttccataggcgcgcgcccgcgtca c.-301
. . . . . . g.5204
cgtgggccgaggttccggcgcggctgctggccggcggctgagccgggagaaaggagctgc c.-241
. . . . . . g.5264
ggccaccgttcgccctacttctgcgcctcggggcgggcgcgccggtaaaaatggcgaaat c.-181
. . . . . . g.5324
gggggtaggcggcgctggacctgaagagatggggcgcgcaggtggggcggttgtcagagc c.-121
. . . . . . g.5384
cccctgacgtgggcgccgggcttttatcggcgatttgatctggcgacctcgggccggcgc c.-61
. . . . . . g.5444
ctaagaggtcagactgcggagcctgcgggtcgccagcggccccgccgagagccggaggca c.-1
. . | 02 . . . . g.7550
ATGGATGAACAGAGCGTGGAG | AGCATTGCTGAGGTTTTCCGATGTTTCATTTGTATGGAG c.60
M D E Q S V E | S I A E V F R C F I C M E p.20
. . . . . . g.7610
AAATTGCGGGATGCACGCCTGTGTCCTCATTGCTCCAAACTGTGTTGTTTCAGCTGTATT c.120
K L R D A R L C P H C S K L C C F S C I p.40
| 03 . . . . | 04 . . g.23514
AGG | CGCTGGCTGACAGAGCAGAGAGCTCAATGTCCTCATTGCCG | TGCTCCACTCCAGCTA c.180
R | R W L T E Q R A Q C P H C R | A P L Q L p.60
. . . . . . g.23574
CGAGAACTAGTAAATTGTCGTTGGGCAGAAGAAGTAACACAACAGCTTGATACTCTTCAA c.240
R E L V N C R W A E E V T Q Q L D T L Q p.80
. . . . | 05 . . g.27835
CTCTGCAGTCTCACCAAACATGAAGAAAATGAAAAGGACAA | ATGTGAAAATCACCATGAA c.300
L C S L T K H E E N E K D K | C E N H H E p.100
. . . . . . g.27895
AAACTTAGTGTATTTTGCTGGACTTGTAAGAAGTGTATCTGCCATCAGTGTGCACTTTGG c.360
K L S V F C W T C K K C I C H Q C A L W p.120
| 06 . . . . . g.30737
GGAGGAATG | CATGGCGGACATACCTTTAAACCTTTGGCAGAAATTTATGAGCAACACGTC c.420
G G M | H G G H T F K P L A E I Y E Q H V p.140
. . . . . . g.30797
ACTAAAGTGAATGAAGAGGTAGCCAAACTTCGTCGGCGTCTCATGGAACTGATCAGCTTA c.480
T K V N E E V A K L R R R L M E L I S L p.160
. | 07 . . . . . g.32076
GTTCAAGAAGTG | GAAAGGAATGTAGAAGCTGTAAGAAATGCAAAAGATGAGCGTGTTCGG c.540
V Q E V | E R N V E A V R N A K D E R V R p.180
. . . . . . g.32136
GAAATTAGGAATGCAGTGGAGATGATGATTGCACGGTTAGACACACAGCTGAAGAATAAG c.600
E I R N A V E M M I A R L D T Q L K N K p.200
. | 08 . . . . . g.36235
CTTATAACACTGATGG | GTCAGAAGACATCTCTAACCCAAGAAACAGAGCTTTTGGAATCC c.660
L I T L M G | Q K T S L T Q E T E L L E S p.220
. . | 09 . . . . g.40994
TTACTTCAGGAGGTGGAGCACCAG | TTGCGGTCTTGTAGTAAGAGTGAGTTGATATCTAAG c.720
L L Q E V E H Q | L R S C S K S E L I S K p.240
. . . . . . g.41054
AGCTCAGAGATCCTTATGATGTTTCAGCAAGTTCATCGGAAGCCCATGGCATCTTTTGTT c.780
S S E I L M M F Q Q V H R K P M A S F V p.260
. . | 10 . . . g.47531
ACCACTCCTGTTCCACCAGACTTTACCAG | TGAATTAGTGCCATCTTACGATTCAGCTACT c.840
T T P V P P D F T S | E L V P S Y D S A T p.280
. . | 11 . . . . g.49297
TTTGTTTTAGAGAATTTCAG | CACTTTGCGTCAGAGAGCAGATCCTGTTTACAGTCCACCT c.900
F V L E N F S | T L R Q R A D P V Y S P P p.300
. . . . | 12 . . g.50815
CTTCAAGTTTCAGGACTTTGCTGGAGGTTAAAAGTTTACCCA | GATGGAAATGGAGTTGTG c.960
L Q V S G L C W R L K V Y P | D G N G V V p.320
. . . . . | 13 g.54852
CGAGGTTACTACTTATCTGTGTTTCTGGAGCTCTCAGCTGGCTTGCCTGAAACTTCTAA | A c.1020
R G Y Y L S V F L E L S A G L P E T S K | p.340
. . . . . . g.54912
TATGAATATCGTGTAGAGATGGTTCACCAGTCCTGTAATGATCCTACAAAAAATATCATT c.1080
Y E Y R V E M V H Q S C N D P T K N I I p.360
. . . . . . g.54972
CGAGAATTTGCATCTGACTTTGAAGTTGGAGAATGCTGGGGCTATAATAGATTTTTCCGT c.1140
R E F A S D F E V G E C W G Y N R F F R p.380
. . . . . | 14 g.60578
TTGGACTTACTCGCAAATGAAGGATACTTGAATCCACAAAATGATACAGTGATTTTAAG | G c.1200
L D L L A N E G Y L N P Q N D T V I L R | p.400
. . . . . . g.60638
TTTCAGGTACGTTCACCAACTTTCTTTCAAAAATCCCGGGACCAGCATTGGTACATTACT c.1260
F Q V R S P T F F Q K S R D Q H W Y I T p.420
. . . . . | 15 . g.62518
CAGTTGGAAGCTGCACAGACTAGTTATATCCAACAAATAAACAACCTTAAAGAG | AGACTT c.1320
Q L E A A Q T S Y I Q Q I N N L K E | R L p.440
. . . . . . g.62578
ACTATTGAGCTGTCTCGAACTCAGAAGTCAAGAGATTTGTCACCACCAGATAACCATCTT c.1380
T I E L S R T Q K S R D L S P P D N H L p.460
. . . . . . g.62638
AGCCCCCAAAATGATGATGCTCTGGAGACACGAGCTAAGAAGTCTGCATGCTCTGACATG c.1440
S P Q N D D A L E T R A K K S A C S D M p.480
. . . . . . g.62698
CTTCTCGAAGGTGGTCCTACTACAGCTTCTGTAAGAGAGGCCAAAGAGGATGAAGAAGAT c.1500
L L E G G P T T A S V R E A K E D E E D p.500
. . . | 16 . . . g.64116
GAGGAGAAGATTCAGAATGAAGATTATCAT | CACGAGCTTTCAGATGGAGATCTGGATCTG c.1560
E E K I Q N E D Y H | H E L S D G D L D L p.520
. . . . . . g.64176
GATCTTGTTTATGAGGATGAAGTAAATCAGCTCGATGGCAGCAGTTCCTCTGCTAGTTCC c.1620
D L V Y E D E V N Q L D G S S S S A S S p.540
. . . . | 17. . g.70020
ACAGCAACAAGTAATACAGAAGAAAATGATATTGATGAAGAAACTAT | GTCTGGAGAAAAT c.1680
T A T S N T E E N D I D E E T M | S G E N p.560
. . . . . . g.70080
GATGTGGAATATAACAACATGGAATTAGAAGAGGGAGAACTCATGGAAGATGCAGCTGCT c.1740
D V E Y N N M E L E E G E L M E D A A A p.580
. | 18 . . . . . g.79862
GCAGGACCCGCAG | GTAGTAGCCATGGTTATGTGGGTTCCAGTAGTAGAATATCAAGAAGA c.1800
A G P A G | S S H G Y V G S S S R I S R R p.600
. . . . . . g.79922
ACACATTTATGCTCCGCTGCTACCAGTAGTTTACTAGACATTGATCCATTAATTTTAATA c.1860
T H L C S A A T S S L L D I D P L I L I p.620
. . . . . . g.79982
CATTTGTTGGACCTTAAGGACCGGAGCAGTATAGAAAATTTGTGGGGCTTACAGCCTCGC c.1920
H L L D L K D R S S I E N L W G L Q P R p.640
. . | 19 . . . g.83214
CCACCTGCTTCACTTCTGCAGCCCACAG | CATCATATTCTCGAAAAGATAAAGACCAAAGG c.1980
P P A S L L Q P T A | S Y S R K D K D Q R p.660
. . . . . . g.83274
AAGCAACAGGCAATGTGGCGAGTGCCCTCTGATTTAAAGATGCTAAAAAGACTCAAAACT c.2040
K Q Q A M W R V P S D L K M L K R L K T p.680
. . . . . . g.83334
CAAATGGCCGAAGTTCGATGTATGAAAACTGATGTAAAGAATACACTTTCAGAAATAAAA c.2100
Q M A E V R C M K T D V K N T L S E I K p.700
. . . . . . g.83394
AGCAGCAGTGCTGCTTCTGGAGACATGCAGACAAGCCTTTTTTCTGCTGACCAGGCAGCT c.2160
S S S A A S G D M Q T S L F S A D Q A A p.720
. . . . . . g.83454
CTGGCTGCATGTGGAACTGAAAACTCTGGCAGATTGCAGGATTTGGGAATGGAACTCCTG c.2220
L A A C G T E N S G R L Q D L G M E L L p.740
. . . | 20. . . g.94504
GCAAAGTCATCAGTTGCCAATTGTTACATACGAAACT | CCACAAATAAGAAGAGTAATTCG c.2280
A K S S V A N C Y I R N S | T N K K S N S p.760
. . . . . . g.94564
CCCAAGCCAGCTCGATCCAGTGTAGCAGGTAGTCTATCACTTCGAAGAGCAGTGGACCCT c.2340
P K P A R S S V A G S L S L R R A V D P p.780
. . . . | 21 . . g.96120
GGAGAAAATAGTCGTTCAAAGGGAGACTGTCAGACTCTGTCTGAAG | GCTCCCCAGGAAGC c.2400
G E N S R S K G D C Q T L S E G | S P G S p.800
. . . . . . g.96180
TCTCAGTCTGGGAGCAGGCACAGTTCTCCCCGAGCCTTGATACATGGCAGTATCGGTGAT c.2460
S Q S G S R H S S P R A L I H G S I G D p.820
. . . . . . g.96240
ATTCTGCCAAAAACTGAAGACCGGCAGTGTAAAGCTTTGGATTCAGATGCTGTTGTGGTT c.2520
I L P K T E D R Q C K A L D S D A V V V p.840
. . . . . | 22 . g.99463
GCAGTTTTCAGTGGCTTGCCTGCGGTTGAGAAAAGGAGGAAAATGGTCACCTTGGG | GGCT c.2580
A V F S G L P A V E K R R K M V T L G | A p.860
. . . . . . g.99523
AATGCTAAAGGAGGTCATCTGGAAGGACTGCAGATGACTGATTTGGAAAATAATTCTGAA c.2640
N A K G G H L E G L Q M T D L E N N S E p.880
. . . . . | 23 . g.110196
ACTGGAGAGTTACAGCCTGTACTACCTGAAGGAGCTTCAGCTGCCCCTGAAGAAG | GAATG c.2700
T G E L Q P V L P E G A S A A P E E G | M p.900
. . . . . . g.110256
AGTAGCGACAGTGACATTGAATGTGACACTGAGAATGAGGAGCAGGAAGAGCATACCAGT c.2760
S S D S D I E C D T E N E E Q E E H T S p.920
. . . . . | 24 . g.112454
GTGGGCGGGTTTCACGACTCCTTCATGGTCATGACACAGCCCCCGGATGAAG | ATACACAT c.2820
V G G F H D S F M V M T Q P P D E D | T H p.940
. . . . . . g.112514
TCCAGTTTTCCTGATGGTGAACAAATAGGCCCTGAAGATCTCAGCTTCAATACAGATGAA c.2880
S S F P D G E Q I G P E D L S F N T D E p.960
. | 25 g.129033
AATAGTGGAAG | ATAA c.2895
N S G R | X p.964
. . . . . . g.129093
tttgatttgaaactgacactgcacctgatgggttaacaagatctaggcttcagaaggtga c.*60
. . . . . . g.129153
cagatatgagtgaggaccatgtgtggggcaaagcctcagaatgatgaaaaggttccggca c.*120
. . . . . . g.129213
ctatagttggggccatgttgactccttttcaaccatttgtcacagacgtgagaagaagaa c.*180
. . . . . . g.129273
atgacttcaaaatcaagagaaaacaaatactgaaagtctctacttacatccaaattttaa c.*240
. . . . g.129313
aaaataaaatctgtagattaacaatctgatcattgctaaa c.*280
(downstream sequence)
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