ubiquitin specific peptidase 9, Y-linked (USP9Y) - coding DNA reference sequence

(used for variant description)

(last modified September 14, 2013)


This file was created to facilitate the description of sequence variants on transcript NM_004654.3 in the USP9Y gene based on a coding DNA reference sequence following the HGVS recommendations.

The sequence was taken from NG_008311.1, covering USP9Y transcript NM_004654.3.


Please note that introns are available by clicking on the exon numbers above the sequence.
 (upstream sequence)
                     .         .         .         .                g.5045
                tgaataattgaactttgtttatttctccatatttttgcagtggta       c.-901

 .         .         .         .         .         .                g.5105
 attccattataaaacctaatgaaacaatgtttttatagatggtgtggaaagacttttctg       c.-841

 .         .         .         .         .         .                g.5165
 ggctcagaggtgaaactgacccttgtgtatcagcagcatttctgactgactgagagagtg       c.-781

 .         .         .         .         .         .                g.5225
 tagtgattaacagagttgtgatgttagttaagaaacttagatttgccattgtagcttttc       c.-721

 .         .         .         .         .         .                g.5285
 taccaattagcagattgtttaactcactgaaattgtaaagtggtagacgtggacttagtc       c.-661

 .         .         .         .         .         .                g.5345
 attactgggcagcttatgaattgtattcatttactcatgatgtaaaaatggttagtctcc       c.-601

 .         .         .         .         .         .                g.5405
 acttttaaggctctagttctagtggctaaataggtacttatttatacagtatgataactg       c.-541

 .         .         .         .         .         .                g.5465
 ctgtattaaaatacatgtctcaaatgtggaatagtagaagaggtgaagaaaatcatagtt       c.-481

 .         .         .         .         .         .                g.5525
 tgaggtagaatactgtttgctggtcttaaaaactgtggtattttggtgattccataaatt       c.-421

 .         .         .         .         .         .                g.5585
 aggtcagatacttccactggagggaaacagtttaaaggatatatgtgatactattaatag       c.-361

 .         .         .         .         .         .                g.5645
 aatgaggaagacacaccagatatttaggagggaattagcgagcttgaaactaagagctgg       c.-301

 .         .         .         .         .         .                g.5705
 tttgaatgagactgggtcataagtgatttcaagtaccagattaaggcactgagattttat       c.-241

 .         .         .         .         .         .                g.5765
 ttttaagcactgaagtcagattttttccttttaaaagaaaggattcatgatgaaatctgc       c.-181

 .         .         .         .         .         .                g.5825
 tttttgttttgcagagagcttggagataattctggtggctgtgtggagtatgtgttggag       c.-121

  | 02        .         .         .         .         .             g.12467
  | gtattaaattttcacagtatatataaggcagcaattgataggcctttcacagattcttct    c.-61

  | 03        .         .         .         .         .             g.13221
  | gataactacataaagagacaaaaaaaagaaaaaagagcaaagatctgtgctgtgtcaagt    c.-1

          .         .         .         .         .         .       g.13281
 ATGACAGCCATCACTCATGGCTCTCCAGTAGGAGGGAACGACAGCCAGGGCCAGGTTCTT       c.60
 M  T  A  I  T  H  G  S  P  V  G  G  N  D  S  Q  G  Q  V  L         p.20

          .         .         .       | 04 .         .         .    g.24386
 GATGGCCAGTCTCAGCATCTCTTCCAACAGAACCAG | ACTTCATCACCTGATTCTTCCAAT    c.120
 D  G  Q  S  Q  H  L  F  Q  Q  N  Q   | T  S  S  P  D  S  S  N      p.40

          .         .         .         .         .         .       g.24446
 GAGAATTCCGTAGCAACTCCTCCTCCAGAGGAACAAGGGCAAGGTGATGCCCCACCACAG       c.180
 E  N  S  V  A  T  P  P  P  E  E  Q  G  Q  G  D  A  P  P  Q         p.60

          .         .         .         .         .         .       g.24506
 CATGAAGATGAAGAGCCTGCATTTCCACATACTGAGCTGGCAAACCTGGATGACATGATC       c.240
 H  E  D  E  E  P  A  F  P  H  T  E  L  A  N  L  D  D  M  I         p.80

       | 05  .         .         .         .         .         .    g.25936
 AACAG | GCCTCGATGGGTGGTTCCTGTTTTGCCAAAAGGGGAATTAGAAGTGCTTTTAGAA    c.300
 N  R  |  P  R  W  V  V  P  V  L  P  K  G  E  L  E  V  L  L  E      p.100

          .         .      | 06  .         .         .         .    g.28921
 GCTGCTATTGATCTTAGTGTAAAAG | GCCTTGATGTTAAAAGTGAAGCATGCCAACGTTTT    c.360
 A  A  I  D  L  S  V  K  G |   L  D  V  K  S  E  A  C  Q  R  F      p.120

          .         .         .         .         .         .       g.28981
 TTTCGAGATGGACTAACAATATCTTTCACTAAAATTCTTATGGATGAGGCTGTGAGTGGC       c.420
 F  R  D  G  L  T  I  S  F  T  K  I  L  M  D  E  A  V  S  G         p.140

          .         | 07         .         .         .         .    g.30390
 TGGAAGTTTGAAATTCAT | AGATGTATTATTAACAATACTCATCGCCTAGTGGAGCTTTGT    c.480
 W  K  F  E  I  H   | R  C  I  I  N  N  T  H  R  L  V  E  L  C      p.160

          .         .         .         .         .         .       g.30450
 GTGGCCAAGTTGTCCCAAGATTGGTTTCCACTTCTAGAACTTCTCGCCATGGCCTTAAAT       c.540
 V  A  K  L  S  Q  D  W  F  P  L  L  E  L  L  A  M  A  L  N         p.180

          .         .         .         .         .         .       g.30510
 CCTCACTGCAAGTTTCATATCTACAATGGTACACGTCCGTGTGAATTAATTTCCTCAAAT       c.600
 P  H  C  K  F  H  I  Y  N  G  T  R  P  C  E  L  I  S  S  N         p.200

          .         .         .         .         .        | 08.    g.39389
 GCTCAGTTGCCTGAAGATGAATTATTTGCTCGTTCTTCAGATCCTCGATCACCAAAA | GGT    c.660
 A  Q  L  P  E  D  E  L  F  A  R  S  S  D  P  R  S  P  K   | G      p.220

          .         .         .         .         .         .       g.39449
 TGGCTAGTGGATCTCATCAATAAATTTGGCACATTAAATGGGTTCCAGATTTTGCATGAT       c.720
 W  L  V  D  L  I  N  K  F  G  T  L  N  G  F  Q  I  L  H  D         p.240

          .         .         .         .         .    | 09    .    g.39779
 CGTTTTTTTAATGGATCAGCATTAAATATTCAAATAATTGCAGCTCTTATTAA | ACCATTT    c.780
 R  F  F  N  G  S  A  L  N  I  Q  I  I  A  A  L  I  K  |  P  F      p.260

          .         .         .         .         .         .       g.39839
 GGACAATGCTATGAGTTTCTCAGTCAACATACACTGAAAAAGTACTTCATTCCAGTTATA       c.840
 G  Q  C  Y  E  F  L  S  Q  H  T  L  K  K  Y  F  I  P  V  I         p.280

          .         .         .         .         .         .       g.39899
 GAAATAGTTCCACATTTATTGGAAAACTTAACTGATGAAGAACTGAAAAAGGAGGCAAAG       c.900
 E  I  V  P  H  L  L  E  N  L  T  D  E  E  L  K  K  E  A  K         p.300

          .         .         .         .         .         .       g.39959
 AATGAAGCCAAAAATGATGCCCTTTCAATGATTATTAAATCTTTGAAGAACTTAGCTTCA       c.960
 N  E  A  K  N  D  A  L  S  M  I  I  K  S  L  K  N  L  A  S         p.320

          .         .         .         .         .         .       g.40019
 AGAATTTCAGGACAAGATGAGACTATAAAAAATTTGGAAATTTTTAGGTTAAAGATGATA       c.1020
 R  I  S  G  Q  D  E  T  I  K  N  L  E  I  F  R  L  K  M  I         p.340

       | 10  .         .         .         .         .         .    g.40240
 CTCAG | ATTGTTGCAAATTTCCTCTTTTAATGGAAAGATGAATGCACTGAATGAAATAAAT    c.1080
 L  R  |  L  L  Q  I  S  S  F  N  G  K  M  N  A  L  N  E  I  N      p.360

          .         .         .         .         .         .       g.40300
 AAGGTTATATCTAGTGTATCATATTATACTCATCGGCATAGTAATCCTGAGGAGGAAGAA       c.1140
 K  V  I  S  S  V  S  Y  Y  T  H  R  H  S  N  P  E  E  E  E         p.380

          .         .     | 11   .         .         .         .    g.41967
 TGGCTGACAGCTGAGCGAATGGCA | GAATGGATACAGCAAAATAATATCTTATCCATAGTC    c.1200
 W  L  T  A  E  R  M  A   | E  W  I  Q  Q  N  N  I  L  S  I  V      p.400

          .         .         .         .         .         .       g.42027
 TTGCAAGACAGTCTTCATCAACCACAATATGTAGAAAAGCTAGAGAAAATTCTTCGTTTT       c.1260
 L  Q  D  S  L  H  Q  P  Q  Y  V  E  K  L  E  K  I  L  R  F         p.420

          .         .         .         .         .        | 12.    g.43302
 GTGATTAAAGAAAAGGCTCTTACATTACAGGACCTTGATAATATCTGGGCAGCACAG | GCA    c.1320
 V  I  K  E  K  A  L  T  L  Q  D  L  D  N  I  W  A  A  Q   | A      p.440

          .         .         .         .         .         .       g.43362
 GGAAAACATGAAGCCATTGTGAAGAATGTACATGATCTGCTAGCAAAGTTGGCTTGGGAT       c.1380
 G  K  H  E  A  I  V  K  N  V  H  D  L  L  A  K  L  A  W  D         p.460

          .         .         .         .   | 13     .         .    g.60980
 TTTTCTCCTGGACAACTTGATCATCTTTTTGATTGCTTTAAG | GCAAGTTGGACAAATGCA    c.1440
 F  S  P  G  Q  L  D  H  L  F  D  C  F  K   | A  S  W  T  N  A      p.480

          .         .         .         .         .         .       g.61040
 AGTAAAAAGCAACGTGAAAAGCTCCTTGAGTTGATACGCCGTCTTGCAGAAGATGATAAA       c.1500
 S  K  K  Q  R  E  K  L  L  E  L  I  R  R  L  A  E  D  D  K         p.500

          .         .         .         .         .         .       g.61100
 GATGGTGTGATGGCACACAAAGTGTTGAACCTTCTTTGGAACCTGGCTCAGAGTGATGAT       c.1560
 D  G  V  M  A  H  K  V  L  N  L  L  W  N  L  A  Q  S  D  D         p.520

          .         .         .         .         .         .       g.61160
 GTGCCTGTAGACATCATGGACCTTGCTCTTAGTGCCCACATAAAAATACTAGATTATAGT       c.1620
 V  P  V  D  I  M  D  L  A  L  S  A  H  I  K  I  L  D  Y  S         p.540

           | 14        .         .         .         .         .    g.62327
 TGTTCCCAG | GATCGAGATGCACAGAAGATCCAGTGGATAGATCACTTTATAGAAGAACTT    c.1680
 C  S  Q   | D  R  D  A  Q  K  I  Q  W  I  D  H  F  I  E  E  L      p.560

          .         .         .         .         .         .       g.62387
 CGCACAAATGACAAGTGGGTAATTCCTGCTCTGAAACAAATAAGAGAAATTTGTAGTTTG       c.1740
 R  T  N  D  K  W  V  I  P  A  L  K  Q  I  R  E  I  C  S  L         p.580

          .         .       | 15 .         .         .         .    g.64288
 TTTGGTGAAGCATCTCAAAATTTGAG | TCAAACTCAGCGAAGTCCCCACATATTTTATCGC    c.1800
 F  G  E  A  S  Q  N  L  S  |  Q  T  Q  R  S  P  H  I  F  Y  R      p.600

          .         .         .         .         .         .       g.64348
 CATGATTTAATCAACCAGCTTCAACAAAATCATGCTTTAGTTACTTTGGTAGCAGAAAAC       c.1860
 H  D  L  I  N  Q  L  Q  Q  N  H  A  L  V  T  L  V  A  E  N         p.620

          .         .         .         . | 16       .         .    g.74862
 CTTGCAACCTACATGAATAGCATCAGATTGTATGCTGGAG | ATCATGAAGACTATGATCCA    c.1920
 L  A  T  Y  M  N  S  I  R  L  Y  A  G  D |   H  E  D  Y  D  P      p.640

          .         .         .         .         .         .       g.74922
 CAAACAGTGAGGCTTGGAAGTCGATACAGTCATGTTCAAGAAGTTCAAGAACGACTAAAC       c.1980
 Q  T  V  R  L  G  S  R  Y  S  H  V  Q  E  V  Q  E  R  L  N         p.660

          | 17         .         .         .         .         .    g.77409
 TTCCTTAG | ATTTTTACTGAAGGATGGCCAACTGTGGCTCTGTGCTCCTCAGGCAAAACAA    c.2040
 F  L  R  |  F  L  L  K  D  G  Q  L  W  L  C  A  P  Q  A  K  Q      p.680

          .         .         .         .         .         .       g.77469
 ATATGGAAGTGCTTAGCAGAAAATGCAGTTTATCTTTGTGATCGTGAAGCCTGTTTTAAG       c.2100
 I  W  K  C  L  A  E  N  A  V  Y  L  C  D  R  E  A  C  F  K         p.700

          .         .         .         .         .         .       g.77529
 TGGTATTCCAAGTTAATGGGGGATGAACCAGACTTGGATCCTGATATTAATAAGGACTTC       c.2160
 W  Y  S  K  L  M  G  D  E  P  D  L  D  P  D  I  N  K  D  F         p.720

          .         .         .         .         .         .       g.77589
 TTTGAAAGTAATGTACTTCAGCTTGATCCTTCCCTTTTAACTGAAAATGGAATGAAATGC       c.2220
 F  E  S  N  V  L  Q  L  D  P  S  L  L  T  E  N  G  M  K  C         p.740

          .         .         .         .         .         .       g.77649
 TTTGAAAGATTTTTCAAAGCTGTCAATTGTCGAGAAAGGAAACTAATAGCAAAAAGAAGA       c.2280
 F  E  R  F  F  K  A  V  N  C  R  E  R  K  L  I  A  K  R  R         p.760

          .         .         .         .         .  | 18      .    g.79254
 TCCTATATGATGGATGATTTGGAATTAATTGGACTAGACTACCTTTGGAGG | GTTGTGATT    c.2340
 S  Y  M  M  D  D  L  E  L  I  G  L  D  Y  L  W  R   | V  V  I      p.780

          .         .         .         .         .         .       g.79314
 CAGAGTAGTGACGAGATTGCTAACAGAGCTATAGATCTTCTTAAAGAGATATACACAAAC       c.2400
 Q  S  S  D  E  I  A  N  R  A  I  D  L  L  K  E  I  Y  T  N         p.800

          .         .        | 19.         .         .         .    g.80456
 CTTGGCCCAAGATTAAAAGCCAATCAG | GTGGTTATCCATGAAGACTTCATTCAGTCTTGC    c.2460
 L  G  P  R  L  K  A  N  Q   | V  V  I  H  E  D  F  I  Q  S  C      p.820

          .         .         .         .         .         .       g.80516
 TTTGATCGTTTAAAAGCATCATATGATACACTGTGTGTTTTTGATGGTGACAAAAACAGC       c.2520
 F  D  R  L  K  A  S  Y  D  T  L  C  V  F  D  G  D  K  N  S         p.840

          .         .         .         .         .         .       g.80576
 ATTAATTGTGCAAGACAAGAAGCCATTCGAATGGTTAGAGTATTAACTGTTATAAAAGAG       c.2580
 I  N  C  A  R  Q  E  A  I  R  M  V  R  V  L  T  V  I  K  E         p.860

          .         .         .         .         .          | 20    g.81794
 TACATTAATGAATGTGACAGTGATTATCACAAGGAAAGAATGATTCTACCTATGTCGAG | A    c.2640
 Y  I  N  E  C  D  S  D  Y  H  K  E  R  M  I  L  P  M  S  R  |      p.880

          .         .         .         .         .         .       g.81854
 GCATTTCGTGGCAAACACCTCTCTCTTATAGTTCGGTTTCCAAACCAGGGCAGACAGGTT       c.2700
 A  F  R  G  K  H  L  S  L  I  V  R  F  P  N  Q  G  R  Q  V         p.900

          .         .         .         .         .         .       g.81914
 GATGAGTTGGATATATGGTCTCATACGAATGACACAATTGGTTCAGTACGGCGATGTATT       c.2760
 D  E  L  D  I  W  S  H  T  N  D  T  I  G  S  V  R  R  C  I         p.920

          .         .         .         .         .         .       g.81974
 GTTAATCGTATTAAAGCCAATGTAGCCCACAAAAAAATTGAACTTTTTGTGGGTGGTGAG       c.2820
 V  N  R  I  K  A  N  V  A  H  K  K  I  E  L  F  V  G  G  E         p.940

          .         .         .         .         .         .       g.82034
 CTGATAGATTCTGAAGATGACAGAAAGCTAATTGGACAATTAAACTTAAAAGATAAATCT       c.2880
 L  I  D  S  E  D  D  R  K  L  I  G  Q  L  N  L  K  D  K  S         p.960

  | 21       .         .         .         .         .         .    g.82440
  | CTAATTACAGCCAAACTTACACAAATAAATTTCAATATGCCATCAAGTCCTGATAGCTCT    c.2940
  | L  I  T  A  K  L  T  Q  I  N  F  N  M  P  S  S  P  D  S  S      p.980

          .         .         .         .         .         .       g.82500
 TCCGATTCCTCAACTGCATCTCCTGGAAACCACCGTAATCATTACAATGATGGTCCCAAT       c.3000
 S  D  S  S  T  A  S  P  G  N  H  R  N  H  Y  N  D  G  P  N         p.1000

          .         .         . | 22       .         .         .    g.83330
 CTAGAGGTGGAAAGTTGTTTGCCTGGGGTG | ATAATGTCAGTGCATCCCAGATACATCTCT    c.3060
 L  E  V  E  S  C  L  P  G  V   | I  M  S  V  H  P  R  Y  I  S      p.1020

          .         .         .         .         .         .       g.83390
 TTCCTTTGGCAAGTTGCAGACTTAGGTAGCAACCTGAATATGCCACCTCTTAGAGATGGA       c.3120
 F  L  W  Q  V  A  D  L  G  S  N  L  N  M  P  P  L  R  D  G         p.1040

          .         .         .  | 23      .         .         .    g.90006
 GCAAGAGTACTTATGAAACTTATGCCACCAG | ATAGAACAGCTGTAGAAAAATTACGAGCT    c.3180
 A  R  V  L  M  K  L  M  P  P  D |   R  T  A  V  E  K  L  R  A      p.1060

          .         .         .         .         .         .       g.90066
 GTTTGTTTGGACCATGCAAAACTTGGAGAAGGCAAACTTAGTCCACCCCTTGACTCTCTT       c.3240
 V  C  L  D  H  A  K  L  G  E  G  K  L  S  P  P  L  D  S  L         p.1080

          .         .         .         .   | 24     .         .    g.90313
 TTCTTTGGTCCTTCTGCCTCCCAAGTTCTATACCTAACAGAG | GTAGTTTATGCCTTGTTA    c.3300
 F  F  G  P  S  A  S  Q  V  L  Y  L  T  E   | V  V  Y  A  L  L      p.1100

          .         .         .         .         .         .       g.90373
 ATGCCTGCTGGTGTGCCTCTAACTGATGGGTCCTCTGACTTTCAAGTTCACTTCTTGAAA       c.3360
 M  P  A  G  V  P  L  T  D  G  S  S  D  F  Q  V  H  F  L  K         p.1120

          .         .         .         .         .         .       g.90433
 AGTGGTGGCTTACCTCTTGTACTGAGTATGCTAATAAGAAATAACTTCTTGCCAAATACA       c.3420
 S  G  G  L  P  L  V  L  S  M  L  I  R  N  N  F  L  P  N  T         p.1140

          .         .         .         .         .         .       g.90493
 GATATGGAAACTCGAAGGGGTGCTTATTTAAATGCTCTTAAAATAGCCAAACTGTTGTTA       c.3480
 D  M  E  T  R  R  G  A  Y  L  N  A  L  K  I  A  K  L  L  L         p.1160

          .         .         .         .         .         .       g.90553
 ACTGCGATTGGCTATGGCCATGTTCGAGCTGTAGCAGAAGCTTGTCAGCCAGTTGTAGAT       c.3540
 T  A  I  G  Y  G  H  V  R  A  V  A  E  A  C  Q  P  V  V  D         p.1180

          .         .  | 25      .         .         .         .    g.94219
 GGTACAGACCCCATAACACAG | ATTAACCAAGTTACTCATGATCAAGCAGTGGTGCTACAA    c.3600
 G  T  D  P  I  T  Q   | I  N  Q  V  T  H  D  Q  A  V  V  L  Q      p.1200

          .         .         .         .         .         .       g.94279
 AGTGCCCTTCAGAGCATTCCTAATCCCTCATCCGAGTGCGTACTTAGAAATGAGTCCATA       c.3660
 S  A  L  Q  S  I  P  N  P  S  S  E  C  V  L  R  N  E  S  I         p.1220

          .         .        | 26.         .         .         .    g.95305
 CTTCTTGCTCAGGAAATATCTAATGAG | GCTTCAAGATATATGCCTGATATTTGTGTAATT    c.3720
 L  L  A  Q  E  I  S  N  E   | A  S  R  Y  M  P  D  I  C  V  I      p.1240

          .         .         .         .         .         .       g.95365
 AGGGCTATACAGAAAATTATCTGGGCATCAGCATGTGGGGCATTAGGACTAGTTTTTAGC       c.3780
 R  A  I  Q  K  I  I  W  A  S  A  C  G  A  L  G  L  V  F  S         p.1260

          .         .         .    | 27    .         .         .    g.96832
 CCAAATGAAGAAATAACTAAAATTTATCAGATG | ACCACCAATGGAAGCAATAAGCTGGAG    c.3840
 P  N  E  E  I  T  K  I  Y  Q  M   | T  T  N  G  S  N  K  L  E      p.1280

          .         .         .         .         .         .       g.96892
 GTGGAAGATGAACAAGTTTGCTGTGAAGCACTGGAAGTGATGACCTTATGTTTTGCTTTA       c.3900
 V  E  D  E  Q  V  C  C  E  A  L  E  V  M  T  L  C  F  A  L         p.1300

          .         .         .         .         .         .       g.96952
 CTTCCAACAGCGTTGGATGCACTTAGTAAAGAAAAAGCCTGGCAGACCTTCATCATTGAC       c.3960
 L  P  T  A  L  D  A  L  S  K  E  K  A  W  Q  T  F  I  I  D         p.1320

          .         .    | 28    .         .         .         .    g.113991
 TTATTATTGCACTGTCCAAGCAA | AACTGTTCGTCAGTTGGCACAGGAGCAGTTCTTTTTA    c.4020
 L  L  L  H  C  P  S  K  |  T  V  R  Q  L  A  Q  E  Q  F  F  L      p.1340

          .         .         .         .         .         .       g.114051
 ATGTGCACCAGATGTTGCATGGGACACAGGCCTCTGCTTTTCTTCATTACTTTACTCTTT       c.4080
 M  C  T  R  C  C  M  G  H  R  P  L  L  F  F  I  T  L  L  F         p.1360

          .   | 29     .         .         .         .         .    g.114495
 ACCATACTGGGG | AGCACAGCAAGAGAGAAGGGTAAATATTCAGGTGATTATTTCACACTT    c.4140
 T  I  L  G   | S  T  A  R  E  K  G  K  Y  S  G  D  Y  F  T  L      p.1380

          .         .         .         .         .         .       g.114555
 TTACGGCACCTTCTCAATTATGCTTACAATGGCAATATTAACATACCCAATGCTGAAGTT       c.4200
 L  R  H  L  L  N  Y  A  Y  N  G  N  I  N  I  P  N  A  E  V         p.1400

          .         .         .          | 30        .         .    g.115431
 CTTCTTGTCAGTGAAATTGATTGGCTCAAAAGGATTAGG | GATAATGTTAAAAACACAGGT    c.4260
 L  L  V  S  E  I  D  W  L  K  R  I  R   | D  N  V  K  N  T  G      p.1420

          .         .         .         .         .         .       g.115491
 GAAACAGGTGTCGAAGAGCCAATACTGGAAGGCCACCTTGGGGTAACAAAAGAGTTATTG       c.4320
 E  T  G  V  E  E  P  I  L  E  G  H  L  G  V  T  K  E  L  L         p.1440

          .         .         .         .         .         .       g.115551
 GCCTTTCAAACTTCTGAGAAAAAGTATCACTTTGGTTGTGAAAAAGGAGGTGCTAATCTC       c.4380
 A  F  Q  T  S  E  K  K  Y  H  F  G  C  E  K  G  G  A  N  L         p.1460

        | 31 .         .         .         .         .         .    g.116659
 ATTAAA | GAATTAATTGATGATTTCATCTTTCCCGCATCCAAAGTTTACCTGCAGTATTTA    c.4440
 I  K   | E  L  I  D  D  F  I  F  P  A  S  K  V  Y  L  Q  Y  L      p.1480

          .         .         .         .         .         .       g.116719
 AGAAGTGGAGAACTACCAGCTGAGCAGGCTATTCCAGTCTGTAGTTCACCCGTTACCATC       c.4500
 R  S  G  E  L  P  A  E  Q  A  I  P  V  C  S  S  P  V  T  I         p.1500

          .         .         .         .         .         .       g.116779
 AATGCCGGTTTTGAGCTACTTGTAGCATTAGCTATTGGCTGTGTGAGGAATCTCAAACAG       c.4560
 N  A  G  F  E  L  L  V  A  L  A  I  G  C  V  R  N  L  K  Q         p.1520

          .         .         .         .          | 32        .    g.119910
 ATAGTAGACTGTTTGACTGAAATGTATTACATGGGCACAGCAATTACTA | CTTGTGAAGCA    c.4620
 I  V  D  C  L  T  E  M  Y  Y  M  G  T  A  I  T  T |   C  E  A      p.1540

          .         .         .         .         .         .       g.119970
 CTTACTGAGTGGGAATATCTGCCCCCTGTTGGACCCCGCCCACCAAAAGGATTTGTGGGA       c.4680
 L  T  E  W  E  Y  L  P  P  V  G  P  R  P  P  K  G  F  V  G         p.1560

          .         .         .         .         .         .       g.120030
 CTCAAAAATGCTGGTGCTACGTGTTACATGAACTCTGTGATCCAGCAGCTATACATGATT       c.4740
 L  K  N  A  G  A  T  C  Y  M  N  S  V  I  Q  Q  L  Y  M  I         p.1580

          .         .         .         .         .         .       g.120090
 CCTTCTATCAGGAACAGTATTCTTGCAATTGAAGGCACAGGTAGTGATTTACACGATGAT       c.4800
 P  S  I  R  N  S  I  L  A  I  E  G  T  G  S  D  L  H  D  D         p.1600

          .         .         . | 33       .         .         .    g.122225
 ATGTTCGGGGATGAGAAGCAGGACAGTGAG | AGTAATGTTGATCCCCGAGATGATGTATTT    c.4860
 M  F  G  D  E  K  Q  D  S  E   | S  N  V  D  P  R  D  D  V  F      p.1620

          .         .         .         .         .         .       g.122285
 GGATATCCTCATCAATTTGAAGACAAGCCAGCATTAAGTAAGACAGAAGATAGGAAAGAG       c.4920
 G  Y  P  H  Q  F  E  D  K  P  A  L  S  K  T  E  D  R  K  E         p.1640

          .         .         .         .         .         .       g.122345
 TATAATATTGGTGTCCTAAGACACCTTCAGGTCATCTTTGGTCATTTAGCTGCTTCCCAA       c.4980
 Y  N  I  G  V  L  R  H  L  Q  V  I  F  G  H  L  A  A  S  Q         p.1660

          .         .         .         .  | 34      .         .    g.137473
 CTACAATACTATGTACCCAGAGGATTTTGGAAACAGTTCAG | GCTTTGGGGTGAACCTGTT    c.5040
 L  Q  Y  Y  V  P  R  G  F  W  K  Q  F  R  |  L  W  G  E  P  V      p.1680

          .         .         .         .         .         .       g.137533
 AATCTCCGTGAACAACATGATGCCTTAGAGTTTTTTAATTCTTTGGTGGATAGTTTAGAT       c.5100
 N  L  R  E  Q  H  D  A  L  E  F  F  N  S  L  V  D  S  L  D         p.1700

          .         .         .         .         .         .       g.137593
 GAAGCTTTAAAAGCTTTAGGACACCCGGCTATACTAAGTAAAGTCCTAGGAGGCTCCTTT       c.5160
 E  A  L  K  A  L  G  H  P  A  I  L  S  K  V  L  G  G  S  F         p.1720

          .         .         .      | 35  .         .         .    g.141702
 GCTGATCAGAAGATCTGCCAAGGCTGCCCACATAG | GTATGAATGTGAAGAATCTTTTACA    c.5220
 A  D  Q  K  I  C  Q  G  C  P  H  R  |  Y  E  C  E  E  S  F  T      p.1740

          .         .         .         .         .         .       g.141762
 ACTTTGAATGTGGATATTAGAAATCATCAAAATCTTCTTGACTCTTTGGAACAGTATATC       c.5280
 T  L  N  V  D  I  R  N  H  Q  N  L  L  D  S  L  E  Q  Y  I         p.1760

          .         .         .         .         .        | 36.    g.143633
 AAAGGAGATTTATTGGAAGGTGCAAATGCATATCATTGTGAAAAATGTGATAAAAAG | GTT    c.5340
 K  G  D  L  L  E  G  A  N  A  Y  H  C  E  K  C  D  K  K   | V      p.1780

          .         .         .         .         .         .       g.143693
 GACACAGTAAAGCGCCTGCTAATTAAAAAATTGCCTCGGGTTCTTGCTATCCAACTCAAA       c.5400
 D  T  V  K  R  L  L  I  K  K  L  P  R  V  L  A  I  Q  L  K         p.1800

          .         .         .         .         .         .       g.143753
 CGATTTGACTATGACTGGGAAAGAGAATGTGCAATTAAATTCAATGATTATTTTGAATTT       c.5460
 R  F  D  Y  D  W  E  R  E  C  A  I  K  F  N  D  Y  F  E  F         p.1820

          .         .         .         .         .         .       g.143813
 CCTCGAGAGCTGGATATGGGACCTTACACAGTAGCAGGTGTTGCAAACCTGGAAAGGGAT       c.5520
 P  R  E  L  D  M  G  P  Y  T  V  A  G  V  A  N  L  E  R  D         p.1840

          .         .         .         .         .         .       g.143873
 AATGTAAACTCAGAAAATGAGTTGATTGAACAGAAAGAGCAGTCTGACAATGAAACTGCA       c.5580
 N  V  N  S  E  N  E  L  I  E  Q  K  E  Q  S  D  N  E  T  A         p.1860

          .         .         .         .         .         .       g.143933
 GGAGGCACAAAGTACAGACTTGTAGGAGTGCTTGTACACAGTGGTCAAGCAAGCGGTGGG       c.5640
 G  G  T  K  Y  R  L  V  G  V  L  V  H  S  G  Q  A  S  G  G         p.1880

          .         .         .         .         .         .       g.143993
 CATTATTATTCTTACATCATTCAAAGGAATGGTAAAGATGATCAGACAGATCACTGGTAT       c.5700
 H  Y  Y  S  Y  I  I  Q  R  N  G  K  D  D  Q  T  D  H  W  Y         p.1900

          .         .         .         .         .         .       g.144053
 AAATTTGATGATGGAGATGTAACAGAATGCAAAATGGATGATGATGAAGAAATGAAAAAT       c.5760
 K  F  D  D  G  D  V  T  E  C  K  M  D  D  D  E  E  M  K  N         p.1920

          .         .         .         .         .         .       g.144113
 CAGTGTTTTGGTGGAGAGTACATGGGAGAAGTATTTGATCACATGATGAAGCGCATGTCA       c.5820
 Q  C  F  G  G  E  Y  M  G  E  V  F  D  H  M  M  K  R  M  S         p.1940

          .         .         .         .         .         .       g.144173
 TATAGGCGACAGAAGAGGTGGTGGAATGCTTACATACTTTTTTATGAACAAATGGATATG       c.5880
 Y  R  R  Q  K  R  W  W  N  A  Y  I  L  F  Y  E  Q  M  D  M         p.1960

          .         .         .         .         .         .       g.144233
 ATAGATGAAGATGATGAGATGATAAGATACATATCAGAGCTAACTATTGCAAGACCCCAT       c.5940
 I  D  E  D  D  E  M  I  R  Y  I  S  E  L  T  I  A  R  P  H         p.1980

          .         .         .         .         .         .       g.144293
 CAGATCATTATGTCACCAGCCATTGAGAGAAGTGTACGGAAACAAAATGTGAAATTTATG       c.6000
 Q  I  I  M  S  P  A  I  E  R  S  V  R  K  Q  N  V  K  F  M         p.2000

          .         .         .         .         .         .       g.144353
 CATAACCGATTGCAATATAGTTTAGAGTATTTTCAGTTTGTGAAAAAACTGCTTACATGT       c.6060
 H  N  R  L  Q  Y  S  L  E  Y  F  Q  F  V  K  K  L  L  T  C         p.2020

          .         .         | 37         .         .         .    g.144808
 AATGGTGTTTATTTAAACCCTGCTCCAG | GGCAGGATTATTTGTTGCCTGAAGCAGAAGAA    c.6120
 N  G  V  Y  L  N  P  A  P  G |   Q  D  Y  L  L  P  E  A  E  E      p.2040

          .         .         .         .         .         .       g.144868
 ATTACTATGATTAGTATTCAGCTTGCTGCTAGATTCCTCTTTACCACTGGATTTCACACC       c.6180
 I  T  M  I  S  I  Q  L  A  A  R  F  L  F  T  T  G  F  H  T         p.2060

          .         .         .   | 38     .         .         .    g.146034
 AAGAAAATAGTTCGTGGTCCTGCCAGTGACTG | GTATGATGCACTGTGCGTTCTTCTCCGT    c.6240
 K  K  I  V  R  G  P  A  S  D  W  |  Y  D  A  L  C  V  L  L  R      p.2080

          .         .         .         .         .         .       g.146094
 CACAGCAAAAATGTACGTTTTTGGTTTACTCATAATGTCCTTTTTAATGTATCAAATCGC       c.6300
 H  S  K  N  V  R  F  W  F  T  H  N  V  L  F  N  V  S  N  R         p.2100

          .         .         .         .         .         .       g.146154
 TTCTCTGAATACCTTCTGGAGTGCCCTAGTGCAGAAGTGAGGGGTGCATTTGCAAAACTT       c.6360
 F  S  E  Y  L  L  E  C  P  S  A  E  V  R  G  A  F  A  K  L         p.2120

          .         .         .         .         .         .       g.146214
 ATAGTGTTTATTGCACACTTTTCCTTGCAAGATGGGTCTTGTCCTTCTCCTTTTGCATCT       c.6420
 I  V  F  I  A  H  F  S  L  Q  D  G  S  C  P  S  P  F  A  S         p.2140

          .         | 39         .         .         .         .    g.146871
 CCAGGACCTTCTAGTCAG | GCATGTGATAACTTGAGCTTGAGTGACCACTTACTAAGAGCC    c.6480
 P  G  P  S  S  Q   | A  C  D  N  L  S  L  S  D  H  L  L  R  A      p.2160

          .         .         .         .         .         .       g.146931
 ACACTAAATCTCTTGAGAAGGGAAGTTTCAGAGCATGGACATCATTTACAGCAATATTTT       c.6540
 T  L  N  L  L  R  R  E  V  S  E  H  G  H  H  L  Q  Q  Y  F         p.2180

          .         .         | 40         .         .         .    g.150130
 AATTTGTTTGTAATGTATGCCAATTTAG | GTGTGGCAGAAAAAACACAGCTTCTGAAATTG    c.6600
 N  L  F  V  M  Y  A  N  L  G |   V  A  E  K  T  Q  L  L  K  L      p.2200

          .         .         .         .         .         .       g.150190
 AATGTACCTGCTACCTTTATGCTTGTGTCTTTAGACGAAGGACCAGGTCCTCCAATCAAA       c.6660
 N  V  P  A  T  F  M  L  V  S  L  D  E  G  P  G  P  P  I  K         p.2220

          .         .         .         .         .         .       g.150250
 TATCAGTATGCTGAATTAGGCAAGTTATATTCAGTAGTGTCTCAGCTGATTCGTTGTTGC       c.6720
 Y  Q  Y  A  E  L  G  K  L  Y  S  V  V  S  Q  L  I  R  C  C         p.2240

          .         .         .     | 41   .         .         .    g.150724
 AATGTGTCATCAACAATGCAGTCTTCAATCAATG | GTAATCCCCCTCTCCCCAATCCTTTC    c.6780
 N  V  S  S  T  M  Q  S  S  I  N  G |   N  P  P  L  P  N  P  F      p.2260

          .         .         .         .         .         .       g.150784
 GGTGACCTTAATTTATCACAGCCTATAATGCCAATTCAGCAGAATGTGTTAGACATTTTA       c.6840
 G  D  L  N  L  S  Q  P  I  M  P  I  Q  Q  N  V  L  D  I  L         p.2280

          .         .         .         .         .         .       g.150844
 TTTGTGAGAACAAGTTATGTGAAGAAAATTATTGAAGACTGCAGTAACTCAGAGGATACC       c.6900
 F  V  R  T  S  Y  V  K  K  I  I  E  D  C  S  N  S  E  D  T         p.2300

          .         .         .         .         .         .       g.150904
 ATCAAATTACTTCGCTTTTGCTCTTGGGAGAATCCTCAGTTCTCATCTACTGTCCTCAGC       c.6960
 I  K  L  L  R  F  C  S  W  E  N  P  Q  F  S  S  T  V  L  S         p.2320

          .      | 42  .         .         .         .         .    g.151049
 GAACTTCTCTGGCAG | GTTGCATATTCATATACCTATGAACTTCGGCCATATTTAGATCTA    c.7020
 E  L  L  W  Q   | V  A  Y  S  Y  T  Y  E  L  R  P  Y  L  D  L      p.2340

          .         .         .         .     | 43   .         .    g.160121
 CTTTTCCAAATTTTACTGATTGAGGACTCCTGGCAGACTCACAG | AATTCATAATGCACTT    c.7080
 L  F  Q  I  L  L  I  E  D  S  W  Q  T  H  R  |  I  H  N  A  L      p.2360

          .         .         .         .         .         .       g.160181
 AAAGGAATTCCAGATGACAGAGATGGGCTGTTCGATACAATACAGCGCTCGAAGAATCAC       c.7140
 K  G  I  P  D  D  R  D  G  L  F  D  T  I  Q  R  S  K  N  H         p.2380

          .         .         .         .         .         .       g.160241
 TATCAAAAACGAGCATATCAGTGCATAAAATGTATGGTAGCTCTATTTAGCAGTTGTCCT       c.7200
 Y  Q  K  R  A  Y  Q  C  I  K  C  M  V  A  L  F  S  S  C  P         p.2400

          .         .  | 44      .         .         .         .    g.160437
 GTTGCTTACCAGATCTTACAG | GGTAACGGAGATCTTAAAAGAAAATGGACCTGGGCAGTG    c.7260
 V  A  Y  Q  I  L  Q   | G  N  G  D  L  K  R  K  W  T  W  A  V      p.2420

          .         .         .         .         .         .       g.160497
 GAATGGCTAGGAGATGAACTTGAAAGAAGACCATATACTGGCAATCCTCAGTATAGTTAC       c.7320
 E  W  L  G  D  E  L  E  R  R  P  Y  T  G  N  P  Q  Y  S  Y         p.2440

          .         .         .         .         .         .       g.160557
 AACAATTGGTCTCCTCCAGTACAAAGCAATGAAACAGCAAATGGTTATTTCTTAGAAAGA       c.7380
 N  N  W  S  P  P  V  Q  S  N  E  T  A  N  G  Y  F  L  E  R         p.2460

          .         .         .         .         .     | 45   .    g.161337
 TCACATAGTGCTAGGATGACACTTGCAAAAGCTTGTGAACTCTGTCCAGAAGAG | GAGCCA    c.7440
 S  H  S  A  R  M  T  L  A  K  A  C  E  L  C  P  E  E   | E  P      p.2480

          .         .         .         .         .         .       g.161397
 GATGACCAGGATGCCCCAGATGAGCATGAGCCCTCTCCATCAGAAGATGCCCCATTATAT       c.7500
 D  D  Q  D  A  P  D  E  H  E  P  S  P  S  E  D  A  P  L  Y         p.2500

          .         .         . | 46       .         .         .    g.163074
 CCTCATTCACCTGCCTCTCAGTATCAACAG | AATAATCATGTACATGGACAGCCATATACA    c.7560
 P  H  S  P  A  S  Q  Y  Q  Q   | N  N  H  V  H  G  Q  P  Y  T      p.2520

          .         .         .         .         .         .       g.163134
 GGACCAGCAGCACATCACTTGAACAACCCTCAGAAAACAGGCCAACGAACACAAGAAAAT       c.7620
 G  P  A  A  H  H  L  N  N  P  Q  K  T  G  Q  R  T  Q  E  N         p.2540

          .         .         .         .                           g.163182
 TATGAAGGCAATGAAGAAGTATCCTCACCTCAGATGAAGGATCAGTGA                   c.7668
 Y  E  G  N  E  E  V  S  S  P  Q  M  K  D  Q  X                     p.2555

          .         .         .         .         .         .       g.163242
 aaagcaataattaactgcttcctttatgactatgcactaaggtcttatagtccaaacttt       c.*60

          .         .         .         .         .         .       g.163302
 ctctgtgtctggctagtattgaaaactagataaactgctccaaaccaacatggagtaaag       c.*120

          .         .         .         .         .         .       g.163362
 agcatattcactggtttatttgcagtaatttgcaatttgtcagtgtataagacacatgca       c.*180

          .         .         .         .         .         .       g.163422
 gggtgaagtgtacagagttttgtaacaaatgactggtcctaatctgtaaatgagaaaggt       c.*240

          .         .         .         .         .         .       g.163482
 atatatactatgttaatgtctgactgttaattcttaagcaagaaactttttttgatgaaa       c.*300

          .         .         .         .         .         .       g.163542
 acaagtcagatctacacagtcacacaattattttttgttgtgttcactacattgtgcaat       c.*360

          .         .         .         .         .         .       g.163602
 tgatattgcctgctttgagcagtttggtcaacttaccaacttccccccaaaaaagggaac       c.*420

          .         .         .         .         .         .       g.163662
 ataaaagagcccatctttgtcagtttacaccaatagtttcttgttaatccttctttcctg       c.*480

          .         .         .         .         .         .       g.163722
 gatatataaggctggtggtaacttttgaattatatggttgatgtggaaaattggcagtgt       c.*540

          .         .         .         .         .         .       g.163782
 aacatttctagatacttttcattacctttttattctggtatataggctaaccactttaaa       c.*600

          .         .         .         .         .         .       g.163842
 gctattcttatgctgtaacagttagcatggcttcacactgtttgtgtagccaagaggaca       c.*660

          .         .         .         .         .         .       g.163902
 gaattacatgaatgacagtgcccagagtgacagctgtatattgctcagagcttttatttc       c.*720

          .         .         .         .         .         .       g.163962
 ttatacctagaataaatataaaatgggggaaaaatgtgacagacaagcagtttttcattg       c.*780

          .         .         .         .         .         .       g.164022
 cacacatattcttcacatttaatgtttgatagttcaatttcttgagctgaagaatatcaa       c.*840

          .         .         .         .         .         .       g.164082
 agtatcgataatacgaattttaaaatattaaaaccaatacacaaaattttcctatgtcag       c.*900

          .         .         .         .         .         .       g.164142
 aatgtggtggagcataatagattgtatttggtgtgcttgcgattttttttttccatagaa       c.*960

          .         .         .         .         .         .       g.164202
 tttattaagtgaagtttctaaaactttgcttctcctgatcccggtgaagtgtacatcata       c.*1020

          .         .         .         .         .         .       g.164262
 agaatccatagtactttgaagtaccattgcaccaagatgtctgactgaattcatagtcac       c.*1080

          .         .         .         .         .         .       g.164322
 acttttatttgaaagaaagaattgttgtagttttttttcattattctaaaactcttgttg       c.*1140

          .         .         .         .         .         .       g.164382
 ttagatacaagatttaattaagatctaagctcctgcttatttaatgtaattctaaggtac       c.*1200

          .         .         .         .         .         .       g.164442
 cattttagaaaaaacatttgttttaagattccaagaaacctgtgagttaatactatattt       c.*1260

          .         .         .         .         .         .       g.164502
 aaaagagaattggtaaattttgaatgtgtgtaatattttggaacctgtttaaaaaccaaa       c.*1320

          .         .         .         .         .         .       g.164562
 tatacctgcaaatagatacagcctatcctatactatttaaatgtttggctgttttgtttt       c.*1380

          .         .         .         .                           g.164609
 atagaaattattttgctgaattcacaaataaaatttaagaagacttt                    c.*1427

 (downstream sequence)
Legend:
Nucleotide numbering (following the rules of the HGVS for a 'Coding DNA Reference Sequence') is indicated at the right of the sequence, counting the A of the ATG translation initiating Methionine as 1. Every 10th nucleotide is indicated by a "." above the sequence. The Ubiquitin specific peptidase 9, Y-linked protein sequence is shown below the coding DNA sequence, with numbering indicated at the right starting with 1 for the translation initiating Methionine. Every 10th amino acid is shown in bold. The position of introns is indicated by a vertical line, splitting the two exons. The start of the first exon (transcription initiation site) is indicated by a '\', the end of the last exon (poly-A addition site) by a '/'. The exon number is indicated above the first nucleotide(s) of the exon. To aid the description of frame shift variants, all stop codons in the +1 frame are shown in bold while all stop codons in the +2 frame are underlined.

Powered by LOVD v.3.0 Build 07
©2004-2013 Leiden University Medical Center