(used for variant description)
(last modified November 26, 2015)
This file was created to facilitate the description of sequence variants on transcript NM_005429.2 in the VEGFC gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000004.11, covering VEGFC transcript NM_005429.2.
(upstream sequence)
. g.5010
cggggaaggg c.-421
. . . . . . g.5070
gagggaggagggggacgagggctctggcgggtttggaggggctgaacatcgcggggtgtt c.-361
. . . . . . g.5130
ctggtgtcccccgccccgcctctccaaaaagctacaccgacgcggaccgcggcggcgtcc c.-301
. . . . . . g.5190
tccctcgccctcgcttcacctcgcgggctccgaatgcggggagctcggatgtccggtttc c.-241
. . . . . . g.5250
ctgtgaggcttttacctgacacccgccgcctttccccggcactggctgggagggcgccct c.-181
. . . . . . g.5310
gcaaagttgggaacgcggagccccggacccgctcccgccgcctccggctcgcccaggggg c.-121
. . . . . . g.5370
ggtcgccgggaggagcccgggggagagggaccaggaggggcccgcggcctcgcaggggcg c.-61
. . . . . . g.5430
cccgcgcccccacccctgcccccgccagcggaccggtcccccacccccggtccttccacc c.-1
. . . . . . g.5490
ATGCACTTGCTGGGCTTCTTCTCTGTGGCGTGTTCTCTGCTCGCCGCTGCGCTGCTCCCG c.60
M H L L G F F S V A C S L L A A A L L P p.20
. . . . . . g.5550
GGTCCTCGCGAGGCGCCCGCCGCCGCCGCCGCCTTCGAGTCCGGACTCGACCTCTCGGAC c.120
G P R E A P A A A A A F E S G L D L S D p.40
. . | 02. . . . g.68028
GCGGAGCCCGACGCGGGCGAGGCCACG | GCTTATGCAAGCAAAGATCTGGAGGAGCAGTTA c.180
A E P D A G E A T | A Y A S K D L E E Q L p.60
. . . . . . g.68088
CGGTCTGTGTCCAGTGTAGATGAACTCATGACTGTACTCTACCCAGAATATTGGAAAATG c.240
R S V S S V D E L M T V L Y P E Y W K M p.80
. . . . . . g.68148
TACAAGTGTCAGCTAAGGAAAGGAGGCTGGCAACATAACAGAGAACAGGCCAACCTCAAC c.300
Y K C Q L R K G G W Q H N R E Q A N L N p.100
. . . . . . g.68208
TCAAGGACAGAAGAGACTATAAAATTTGCTGCAGCACATTATAATACAGAGATCTTGAAA c.360
S R T E E T I K F A A A H Y N T E I L K p.120
| 03 . . . . . . g.69832
A | GTATTGATAATGAGTGGAGAAAGACTCAATGCATGCCACGGGAGGTGTGTATAGATGTG c.420
S | I D N E W R K T Q C M P R E V C I D V p.140
. . . . . . g.69892
GGGAAGGAGTTTGGAGTCGCGACAAACACCTTCTTTAAACCTCCATGTGTGTCCGTCTAC c.480
G K E F G V A T N T F F K P P C V S V Y p.160
. . . . . . g.69952
AGATGTGGGGGTTGCTGCAATAGTGAGGGGCTGCAGTGCATGAACACCAGCACGAGCTAC c.540
R C G G C C N S E G L Q C M N T S T S Y p.180
. | 04 . . . . . g.86139
CTCAGCAAGACG | TTATTTGAAATTACAGTGCCTCTCTCTCAAGGCCCCAAACCAGTAACA c.600
L S K T | L F E I T V P L S Q G P K P V T p.200
. . . . . . g.86199
ATCAGTTTTGCCAATCACACTTCCTGCCGATGCATGTCTAAACTGGATGTTTACAGACAA c.660
I S F A N H T S C R C M S K L D V Y R Q p.220
. . . . | 05 . . g.109830
GTTCATTCCATTATTAGACGTTCCCTGCCAGCAACACTACCACA | GTGTCAGGCAGCGAAC c.720
V H S I I R R S L P A T L P Q | C Q A A N p.240
. . . . . . g.109890
AAGACCTGCCCCACCAATTACATGTGGAATAATCACATCTGCAGATGCCTGGCTCAGGAA c.780
K T C P T N Y M W N N H I C R C L A Q E p.260
. . . | 06 . . . g.110250
GATTTTATGTTTTCCTCGGATGCTGGAGATG | ACTCAACAGATGGATTCCATGACATCTGT c.840
D F M F S S D A G D D | S T D G F H D I C p.280
. . . . . . g.110310
GGACCAAACAAGGAGCTGGATGAAGAGACCTGTCAGTGTGTCTGCAGAGCGGGGCTTCGG c.900
G P N K E L D E E T C Q C V C R A G L R p.300
. . . . . . g.110370
CCTGCCAGCTGTGGACCCCACAAAGAACTAGACAGAAACTCATGCCAGTGTGTCTGTAAA c.960
P A S C G P H K E L D R N S C Q C V C K p.320
. . . . . . g.110430
AACAAACTCTTCCCCAGCCAATGTGGGGCCAACCGAGAATTTGATGAAAACACATGCCAG c.1020
N K L F P S Q C G A N R E F D E N T C Q p.340
. . . . . . g.110490
TGTGTATGTAAAAGAACCTGCCCCAGAAATCAACCCCTAAATCCTGGAAAATGTGCCTGT c.1080
C V C K R T C P R N Q P L N P G K C A C p.360
. . . . . . g.110550
GAATGTACAGAAAGTCCACAGAAATGCTTGTTAAAAGGAAAGAAGTTCCACCACCAAACA c.1140
E C T E S P Q K C L L K G K K F H H Q T p.380
| 07 . . . . . . g.113756
TGCAG | CTGTTACAGACGGCCATGTACGAACCGCCAGAAGGCTTGTGAGCCAGGATTTTCA c.1200
C S | C Y R R P C T N R Q K A C E P G F S p.400
. . . . . . g.113816
TATAGTGAAGAAGTGTGTCGTTGTGTCCCTTCATATTGGAAAAGACCACAAATGATGAGC c.1260
Y S E E V C R C V P S Y W K R P Q M M S p.420
g.113819
TAA c.1263
X p.420
. . . . . . g.113879
gattgtactgttttccagttcatcgattttctattatggaaaactgtgttgccacagtag c.*60
. . . . . . g.113939
aactgtctgtgaacagagagacccttgtgggtccatgctaacaaagacaaaagtctgtct c.*120
. . . . . . g.113999
ttcctgaaccatgtggataactttacagaaatggactggagctcatctgcaaaaggcctc c.*180
. . . . . . g.114059
ttgtaaagactggttttctgccaatgaccaaacagccaagattttcctcttgtgatttct c.*240
. . . . . . g.114119
ttaaaagaatgactatataatttatttccactaaaaatattgtttctgcattcattttta c.*300
. . . . . . g.114179
tagcaacaacaattggtaaaactcactgtgatcaatatttttatatcatgcaaaatatgt c.*360
. . g.114205
ttaaaataaaatgaaaattgtattat c.*386
(downstream sequence)
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