(used for variant description)
(last modified June 18, 2016)
This file was created to facilitate the description of sequence variants on transcript NM_025216.2 in the WNT10A gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_012179.1, covering WNT10A transcript NM_025216.2.
(upstream sequence)
. . . . g.5043
acagtcacttactctacaggcagtggggcccgacacagacagc c.-421
. . . . . . g.5103
gccgcccccgccagccagcctcgcacgccctcggaagcgcaggctcccggcgctgcgctg c.-361
. . . . . . g.5163
gagggttccccggcaccccagcctcccgtccccagcccgctgcacctccgggcccccctt c.-301
. . . . . . g.5223
acccttgagaggcaccgggagttgtcgcgggggggcctcgggaaattccccggacccctg c.-241
. . . . . . g.5283
tgccaggaggtgcccggttcgcccgctcttcaccccccgccccccccgagggcggtgccc c.-181
. . . . . . g.5343
gggggtgctgccccatggagcggggaggcgggcgccgtctgctccgggagccctgacccg c.-121
. . . . . . g.5403
agtcggagctgtgtgtcgcagccgccccgaccccccgccgatcatgcgccggcgcccctg c.-61
. . . . . . g.5463
gctctccagtcccactgggctgtgagccccccactcccagcccgtcagggcctgcgcgcc c.-1
. . . . . . g.5523
ATGGGCAGCGCCCACCCTCGCCCCTGGCTGCGGCTCCGACCCCAGCCCCAGCCGCGGCCA c.60
M G S A H P R P W L R L R P Q P Q P R P p.20
. . . . . | 02 . g.6635
GCGCTCTGGGTGCTCCTGTTCTTCCTACTGCTGCTGGCTGCTGCCATGCCCAG | GTCAGCA c.120
A L W V L L F F L L L L A A A M P R | S A p.40
. . . . . . g.6695
CCCAATGACATTCTGGACCTCCGCCTCCCCCCGGAGCCCGTGCTCAATGCCAACACAGTG c.180
P N D I L D L R L P P E P V L N A N T V p.60
. . . . . . g.6755
TGCCTAACATTGCCAGGCCTGAGCCGGCGGCAGATGGAGGTGTGTGTGCGTCACCCTGAT c.240
C L T L P G L S R R Q M E V C V R H P D p.80
. . . . . . g.6815
GTGGCTGCCTCAGCCATACAGGGCATCCAGATCGCCATCCACGAATGCCAACACCAATTC c.300
V A A S A I Q G I Q I A I H E C Q H Q F p.100
. . . . . . g.6875
AGGGACCAGCGCTGGAACTGCTCAAGCCTGGAGACTCGCAACAAGATCCCCTATGAGAGT c.360
R D Q R W N C S S L E T R N K I P Y E S p.120
. | 03 . . . . . g.14495
CCCATCTTCAGCAGAG | GTTTCCGAGAGAGCGCTTTTGCCTACGCCATCGCAGCAGCTGGC c.420
P I F S R G | F R E S A F A Y A I A A A G p.140
. . . . . . g.14555
GTGGTGCACGCCGTGTCCAATGCGTGTGCCCTGGGCAAACTGAAGGCCTGTGGCTGTGAT c.480
V V H A V S N A C A L G K L K A C G C D p.160
. . . . . . g.14615
GCGTCCCGGCGAGGGGACGAGGAGGCCTTCCGTAGGAAGCTGCACCGCTTACAACTGGAT c.540
A S R R G D E E A F R R K L H R L Q L D p.180
. . . . . . g.14675
GCACTGCAGCGTGGTAAGGGCCTGAGCCATGGGGTCCCGGAACACCCAGCCCTGCCCACA c.600
A L Q R G K G L S H G V P E H P A L P T p.200
. . . . . . g.14735
GCCAGCCCAGGCCTGCAGGACTCCTGGGAGTGGGGCGGCTGCAGCCCCGACATGGGCTTC c.660
A S P G L Q D S W E W G G C S P D M G F p.220
. . . . . . g.14795
GGGGAGCGCTTTTCTAAGGACTTTCTGGACTCCCGGGAGCCTCACAGAGACATCCACGCG c.720
G E R F S K D F L D S R E P H R D I H A p.240
. . . | 04 . . . g.17265
AGAATGAGGCTTCACAACAACCGAGTTGGGAGGCAG | GCAGTGATGGAGAACATGCGGCGG c.780
R M R L H N N R V G R Q | A V M E N M R R p.260
. . . . . . g.17325
AAGTGCAAGTGCCACGGCACGTCAGGCAGCTGCCAGCTCAAGACGTGCTGGCAGGTGACG c.840
K C K C H G T S G S C Q L K T C W Q V T p.280
. . . . . . g.17385
CCCGAGTTCCGCACCGTGGGGGCGCTGCTGCGCAGCCGCTTCCACCGCGCCACGCTCATC c.900
P E F R T V G A L L R S R F H R A T L I p.300
. . . . . . g.17445
CGGCCGCACAACCGCAACGGCGGCCAGCTGGAGCCGGGCCCAGCGGGGGCACCCTCGCCG c.960
R P H N R N G G Q L E P G P A G A P S P p.320
. . . . . . g.17505
GCTCCGGGCGCTCCCGGGCCGCGCCGACGGGCCAGCCCCGCCGACCTGGTCTACTTCGAA c.1020
A P G A P G P R R R A S P A D L V Y F E p.340
. . . . . . g.17565
AAGTCTCCCGACTTCTGCGAGCGCGAGCCGCGCCTGGACTCGGCGGGCACCGTGGGCCGC c.1080
K S P D F C E R E P R L D S A G T V G R p.360
. . . . . . g.17625
CTGTGCAACAAGAGCAGCGCCGGCTCGGATGGCTGCGGCAGCATGTGCTGCGGCCGCGGC c.1140
L C N K S S A G S D G C G S M C C G R G p.380
. . . . . . g.17685
CACAACATCCTGCGCCAGACGCGCAGCGAGCGCTGCCACTGCCGCTTCCACTGGTGCTGT c.1200
H N I L R Q T R S E R C H C R F H W C C p.400
. . . . . g.17739
TTCGTGGTCTGCGAAGAGTGCCGCATCACCGAGTGGGTCAGCGTCTGCAAGTGA c.1254
F V V C E E C R I T E W V S V C K X p.417
. . . . . . g.17799
gcggcccggggtcccctgggccctgatcgaggtcccctcctggagcctggccctctgagg c.*60
. . . . . . g.17859
cttacggtcttggcaaggcagcatcgccttggctcttgggaagaggagattggaccacat c.*120
. . . . . . g.17919
gatcttataggaacccctcagctctgaggtctgtgatcgccggacagtccaggcctgtct c.*180
. . . . . . g.17979
gaaccccaccactcacttctgtgggctctaggactgactgggttcttcctccctccccga c.*240
. . . . . . g.18039
agcccagacagttcagttgggctgggggttgctccacaccctaaaacaagcctcagccag c.*300
. . . . . . g.18099
gcaacccgtcagtctgtctccatcctttcaccccttccctggagatgggaggtggggaat c.*360
. . . . . . g.18159
gaatggaagctgacgggcagagagaggaggattaaaaaaaagaaatagacataactgagc c.*420
. . . . . . g.18219
tgaagtaattccataaagggcccagacagcctcctccaccattcccttcatcattcattt c.*480
. . . . . . g.18279
aacaaatatttattttgcactctctttgcggcactctgggggcggtggggtgcgtggggg c.*540
. . . . . . g.18339
tggcaatgcaaggcactgaggccacagatgtgagtaagcgagacacaacacttgtcctct c.*600
. . . . . g.18397
tggaggttacattcttgctggggggaggcatgggcaataaacaagtaaatatacaaac c.*658
(downstream sequence)
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