(used for variant description)
(last modified May 29, 2015)
This file was created to facilitate the description of sequence variants on transcript NM_024426.4 in the WT1 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NG_009272.1, covering WT1 transcript NM_024426.4.
(upstream sequence)
. g.5010
agctggggta c.-181
. . . . . . g.5070
aggagttcaaggcagcgcccacacccgggggctctccgcaacccgaccgcctgtccgctc c.-121
. . . . . . g.5130
ccccacttcccgccctccctcccacctactcattcacccacccacccacccagagccggg c.-61
. . . . . . g.5190
acggcagcccaggcgcccgggccccgccgtctcctcgccgcgatcctggacttcctcttg c.-1
. . . . . . g.5250
CTGCAGGACCCGGCTTCCACGTGTGTCCCGGAGCCGGCGTCTCAGCACACGCTCCGCTCC c.60
L Q D P A S T C V P E P A S Q H T L R S p.20
. . . . . . g.5310
GGGCCTGGGTGCCTACAGCAGCCAGAGCAGCAGGGAGTCCGGGACCCGGGCGGCATCTGG c.120
G P G C L Q Q P E Q Q G V R D P G G I W p.40
. . . . . . g.5370
GCCAAGTTAGGCGCCGCCGAGGCCAGCGCTGAACGTCTCCAGGGCCGGAGGAGCCGCGGG c.180
A K L G A A E A S A E R L Q G R R S R G p.60
. . . . . . g.5430
GCGTCCGGGTCTGAGCCGCAGCAAATGGGCTCCGACGTGCGGGACCTGAACGCGCTGCTG c.240
A S G S E P Q Q M G S D V R D L N A L L p.80
. . . . . . g.5490
CCCGCCGTCCCCTCCCTGGGTGGCGGCGGCGGCTGTGCCCTGCCTGTGAGCGGCGCGGCG c.300
P A V P S L G G G G G C A L P V S G A A p.100
. . . . . . g.5550
CAGTGGGCGCCGGTGCTGGACTTTGCGCCCCCGGGCGCTTCGGCTTACGGGTCGTTGGGC c.360
Q W A P V L D F A P P G A S A Y G S L G p.120
. . . . . . g.5610
GGCCCCGCGCCGCCACCGGCTCCGCCGCCACCCCCGCCGCCGCCGCCTCACTCCTTCATC c.420
G P A P P P A P P P P P P P P P H S F I p.140
. . . . . . g.5670
AAACAGGAGCCGAGCTGGGGCGGCGCGGAGCCGCACGAGGAGCAGTGCCTGAGCGCCTTC c.480
K Q E P S W G G A E P H E E Q C L S A F p.160
. . . . . . g.5730
ACTGTCCACTTTTCCGGCCAGTTCACTGGCACAGCCGGAGCCTGTCGCTACGGGCCCTTC c.540
T V H F S G Q F T G T A G A C R Y G P F p.180
. . . . . . g.5790
GGTCCTCCTCCGCCCAGCCAGGCGTCATCCGGCCAGGCCAGGATGTTTCCTAACGCGCCC c.600
G P P P P S Q A S S G Q A R M F P N A P p.200
. . . . | 02 . . g.11930
TACCTGCCCAGCTGCCTCGAGAGCCAGCCCGCTATTCGCAATCAGG | GTTACAGCACGGTC c.660
Y L P S C L E S Q P A I R N Q G | Y S T V p.220
. . . . . . g.11990
ACCTTCGACGGGACGCCCAGCTACGGTCACACGCCCTCGCACCATGCGGCGCAGTTCCCC c.720
T F D G T P S Y G H T P S H H A A Q F P p.240
. . . . | 03 . g.12488
AACCACTCATTCAAGCATGAGGATCCCATGGGCCAGCAGGGCTCGCTGG | GTGAGCAGCAG c.780
N H S F K H E D P M G Q Q G S L G | E Q Q p.260
. . . . . . g.12548
TACTCGGTGCCGCCCCCGGTCTATGGCTGCCACACCCCCACCGACAGCTGCACCGGCAGC c.840
Y S V P P P V Y G C H T P T D S C T G S p.280
. . . | 04 . . . g.22909
CAGGCTTTGCTGCTGAGGACGCCCTACAGCAG | TGACAATTTATACCAAATGACATCCCAG c.900
Q A L L L R T P Y S S | D N L Y Q M T S Q p.300
. . . . . | 05 . g.24005
CTTGAATGCATGACCTGGAATCAGATGAACTTAGGAGCCACCTTAAAGGG | AGTTGCTGCT c.960
L E C M T W N Q M N L G A T L K G | V A A p.320
. . . . | 06 . . g.40510
GGGAGCTCCAGCTCAGTGAAATGGACAGAAGGGCAGAGCAA | CCACAGCACAGGGTACGAG c.1020
G S S S S V K W T E G Q S N | H S T G Y E p.340
. . . . . . g.40570
AGCGATAACCACACAACGCCCATCCTCTGCGGAGCCCAATACAGAATACACACGCACGGT c.1080
S D N H T T P I L C G A Q Y R I H T H G p.360
. | 07 . . . . g.44170
GTCTTCAGAGGCATTCAG | GATGTGCGACGTGTGCCTGGAGTAGCCCCGACTCTTGTACGG c.1140
V F R G I Q | D V R R V P G V A P T L V R p.380
. . . . . . g.44230
TCGGCATCTGAGACCAGTGAGAAACGCCCCTTCATGTGTGCTTACCCAGGCTGCAATAAG c.1200
S A S E T S E K R P F M C A Y P G C N K p.400
. . . . | 08 . g.47791
AGATATTTTAAGCTGTCCCACTTACAGATGCACAGCAGGAAGCACACTG | GTGAGAAACCA c.1260
R Y F K L S H L Q M H S R K H T G | E K P p.420
. . . . . . g.47851
TACCAGTGTGACTTCAAGGACTGTGAACGAAGGTTTTCTCGTTCAGACCAGCTCAAAAGA c.1320
Y Q C D F K D C E R R F S R S D Q L K R p.440
. | 09 . . . . g.48512
CACCAAAGGAGACATACAG | GTGTGAAACCATTCCAGTGTAAAACTTGTCAGCGAAAGTTC c.1380
H Q R R H T G | V K P F Q C K T C Q R K F p.460
. . . . . | 10 . g.51364
TCCCGGTCCGACCACCTGAAGACCCACACCAGGACTCATACAGGTAAAACAA | GTGAAAAG c.1440
S R S D H L K T H T R T H T G K T S | E K p.480
. . . . . . g.51424
CCCTTCAGCTGTCGGTGGCCAAGTTGTCAGAAAAAGTTTGCCCGGTCAGATGAATTAGTC c.1500
P F S C R W P S C Q K K F A R S D E L V p.500
. . . . . g.51478
CGCCATCACAACATGCATCAGAGAAACATGACCAAACTCCAGCTGGCGCTTTGA c.1554
R H H N M H Q R N M T K L Q L A L X p.517
. . . . . . g.51538
ggggtctccctcggggaccgttcagtgtcccaggcagcacagtgtgtgaactgctttcaa c.*60
. . . . . . g.51598
gtctgactctccactcctcctcactaaaaaggaaacttcagttgatcttcttcatccaac c.*120
. . . . . . g.51658
ttccaagacaagataccggtgcttctggaaactaccaggtgtgcctggaagagttggtct c.*180
. . . . . . g.51718
ctgccctgcctacttttagttgactcacaggccctggagaagcagctaacaatgtctggt c.*240
. . . . . . g.51778
tagttaaaagcccattgccatttggtgtggattttctactgtaagaagagccatagctga c.*300
. . . . . . g.51838
tcatgtccccctgacccttcccttctttttttatgctcgttttcgctggggatggaatta c.*360
. . . . . . g.51898
ttgtaccattttctatcatggaatatttataggccagggcatgtgtatgtgtctgctaat c.*420
. . . . . . g.51958
gtaaactttgtcatggtttccatttactaacagcaacagcaagaaataaatcagagagca c.*480
. . . . . . g.52018
aggcatcgggggtgaatcttgtctaacattcccgaggtcagccaggctgctaacctggaa c.*540
. . . . . . g.52078
agcaggatgtagttctgccaggcaacttttaaagctcatgcatttcaagcagctgaagaa c.*600
. . . . . . g.52138
aaaatcagaactaaccagtacctctgtatagaaatctaaaagaattttaccattcagtta c.*660
. . . . . . g.52198
attcaatgtgaacactggcacactgctcttaagaaactatgaagatctgagatttttttg c.*720
. . . . . . g.52258
tgtatgtttttgactcttttgagtggtaatcatatgtgtctttatagatgtacatacctc c.*780
. . . . . . g.52318
cttgcacaaatggaggggaattcattttcatcactgggagtgtccttagtgtataaaaac c.*840
. . . . . . g.52378
catgctggtatatggcttcaagttgtaaaaatgaaagtgactttaaaagaaaatagggga c.*900
. . . . . . g.52438
tggtccaggatctccactgataagactgtttttaagtaacttaaggacctttgggtctac c.*960
. . . . . . g.52498
aagtatatgtgaaaaaaatgagacttactgggtgaggaaatccattgtttaaagatggtc c.*1020
. . . . . . g.52558
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgttgtgttttgttttttaaggga c.*1080
. . . . . . g.52618
gggaatttattatttaccgttgcttgaaattactgtgtaaatatatgtctgataatgatt c.*1140
. . . . . . g.52678
tgctctttgacaactaaaattaggactgtataagtactagatgcatcactgggtgttgat c.*1200
. . . . . . g.52738
cttacaagatattgatgataacacttaaaattgtaacctgcatttttcactttgctctca c.*1260
. . g.52761
attaaagtctattcaaaaggaaa c.*1283
(downstream sequence)
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