(used for variant description)
(last modified June 8, 2014)
This file was created to facilitate the description of sequence variants on transcript NM_016032.3 in the ZDHHC9 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000023.10, covering ZDHHC9 transcript NM_016032.3.
(upstream sequence)
. . g.5022
atagagggcgagcaactactgg c.-421
. . . . . . g.5082
agcgacctggtgacgtgaggagcgttccatttggccagtggtgggcggttgccacagctg c.-361
. . . . . . g.5142
gtttagggccccgaccactggggccccttgtcaggaggagacagcctcccggcccgggga c.-301
. . . . . . g.5202
ggacaagtcgctgccacctttggctgccgacgtgattccctgggacggtccgtttcctgc c.-241
. . . . | 02 . . g.5631
cgtcagctgccggccgagttgggtctccgtggttcag | gccggctcccccttcctggtctc c.-181
. . . . . | 03 . g.6869
ccttctcccgctgggccggtttatcgggaggagattgtcttccag | ggctagcaattggac c.-121
. . . . . . g.6929
ttttgatgatgtttgacccagcggcaggaatagcaggcaacgtgatttcaaagctgggct c.-61
. . . . . . g.6989
cagcctctgtttcttctctcgtgtaatcgcaaaacccattttggagcaggaattccaatc c.-1
. . . . . . g.7049
ATGTCTGTGATGGTGGTGAGAAAGAAGGTGACACGGAAATGGGAGAAACTCCCAGGCAGG c.60
M S V M V V R K K V T R K W E K L P G R p.20
. . . . . . g.7109
AACACCTTTTGCTGTGATGGCCGCGTCATGATGGCCCGGCAAAAGGGCATTTTCTACCTG c.120
N T F C C D G R V M M A R Q K G I F Y L p.40
. . . . | 04. . g.19806
ACCCTTTTCCTCATCCTGGGGACATGTACACTCTTCTTCGCCTTTGA | GTGCCGCTACCTG c.180
T L F L I L G T C T L F F A F E | C R Y L p.60
. . . . . . g.19866
GCTGTTCAGCTGTCTCCTGCCATCCCTGTATTTGCTGCCATGCTCTTCCTTTTCTCCATG c.240
A V Q L S P A I P V F A A M L F L F S M p.80
. . . . . . g.19926
GCTACACTGTTGAGGACCAGCTTCAGTGACCCTGGAGTGATTCCTCGGGCGCTACCAGAT c.300
A T L L R T S F S D P G V I P R A L P D p.100
. . | 05 . . . g.25129
GAAGCAGCTTTCATAGAAATGGAGATAG | AAGCTACCAATGGTGCGGTGCCCCAGGGCCAG c.360
E A A F I E M E I E | A T N G A V P Q G Q p.120
. . . . . . g.25189
CGACCACCGCCTCGTATCAAGAATTTCCAGATAAACAACCAGATTGTGAAACTGAAATAC c.420
R P P P R I K N F Q I N N Q I V K L K Y p.140
. . . . . . g.25249
TGTTACACATGCAAGATCTTCCGGCCTCCCCGGGCCTCCCATTGCAGCATCTGTGACAAC c.480
C Y T C K I F R P P R A S H C S I C D N p.160
| 06. . . . . . g.34192
TGTGTGG | AGCGCTTCGACCATCACTGCCCCTGGGTGGGGAATTGTGTTGGAAAGAGGAAC c.540
C V E | R F D H H C P W V G N C V G K R N p.180
. . . . . . g.34252
TACCGCTACTTCTACCTCTTCATCCTTTCTCTCTCCCTCCTCACAATCTATGTCTTCGCC c.600
Y R Y F Y L F I L S L S L L T I Y V F A p.200
. . | 07 . . . . g.35244
TTCAACATCGTCTATGTGGCCCTCA | AATCTTTGAAAATTGGCTTCTTGGAGACATTGAAA c.660
F N I V Y V A L K | S L K I G F L E T L K p.220
. | 08 . . . . . g.36160
GAAACTCCTGGAAC | TGTTCTAGAAGTCCTCATTTGCTTCTTTACACTCTGGTCCGTCGTG c.720
E T P G T | V L E V L I C F F T L W S V V p.240
. . . . . | 09. g.37428
GGACTGACTGGATTTCATACTTTCCTCGTGGCTCTCAACCAGACAACCAATGAAGAC | ATC c.780
G L T G F H T F L V A L N Q T T N E D | I p.260
. . . . . . g.37488
AAAGGATCATGGACAGGGAAGAATCGCGTCCAGAATCCCTACAGCCATGGCAATATTGTG c.840
K G S W T G K N R V Q N P Y S H G N I V p.280
. . . . | 10 . . g.37952
AAGAACTGCTGTGAAGTGCTGTGTGGCCCCTTGCCCCCCAG | TGTGCTGGATCGAAGGGGT c.900
K N C C E V L C G P L P P S | V L D R R G p.300
. . . . . . g.38012
ATTTTGCCACTGGAGGAAAGTGGAAGTCGACCTCCCAGTACTCAAGAGACCAGTAGCAGC c.960
I L P L E E S G S R P P S T Q E T S S S p.320
. | 11 . . . . g.42490
CTCTTGCCACAGAGCCCA | GCCCCCACAGAACACCTGAACTCAAATGAGATGCCGGAGGAC c.1020
L L P Q S P | A P T E H L N S N E M P E D p.340
. . . . . . g.42550
AGCAGCACTCCCGAAGAGATGCCACCTCCAGAGCCCCCAGAGCCACCACAGGAGGCAGCT c.1080
S S T P E E M P P P E P P E P P Q E A A p.360
. g.42565
GAAGCTGAGAAGTAG c.1095
E A E K X p.364
. . . . . . g.42625
cctatctatggaagagacttttgtttgtgtttaattagggctatgagagatttcaggtga c.*60
. . . . . . g.42685
gaagttaaacctgagacagagagcaagtaagctgtcccttttaactgtttttctttggtc c.*120
. . . . . . g.42745
tttagtcacccagttgcacactggcattttcttgctgcaagcttttttaaatttctgaac c.*180
. . . . . . g.42805
tcaaggcagtggcagaagatgtcagtcacctctgataactggaaaaatgggtctcttggg c.*240
. . . . . . g.42865
ccctggcactggttctccatggcctcagccacagggtccccttggaccccctctcttccc c.*300
. . . . . . g.42925
tccagatcccagccctcctgcttggggtcactggtctcattctggggctaaaagtttttg c.*360
. . . . . . g.42985
agactggctcaaatcctcccaagctgctgcacgtgctgagtccagaggcagtcacagaga c.*420
. . . . . . g.43045
cctctggccaggggatcctaactgggttcttggggtcttcaggactgaagaggagggaga c.*480
. . . . . . g.43105
gtggggtcagaagattctcctggccaccaagtgccagcattgcccacaaatccttttagg c.*540
. . . . . . g.43165
aatgggacaggtaccttccacttgttgtatttattagtgtagcttctcctttgtctccca c.*600
. . . . . . g.43225
tccactctgacacctaagccccactcttttcccattagatatatgtaagtagttgtagta c.*660
. . . . . . g.43285
gagataataattgacatttctcgtagactacccagaaacttttttaatacctgtgccatt c.*720
. . . . . . g.43345
ctcaataagaatttatgagatgccagcggcatagcccttcacactctctgtctcatctct c.*780
. . . . . . g.43405
cctcctttctcattagccccttttaatttgtttttccttttgactcctgctcccattagg c.*840
. . . . . . g.43465
agcaggaatggcagtaataaaagtctgcactttggtcatttcttttcctcagaggaagcc c.*900
. . . . . . g.43525
tgagtgctcacttaaacactatcccctcagactccctgtgtgaggcctgcagaggccctg c.*960
. . . . . . g.43585
aatgcacaaatgggaaaccaaggcacagagaggctctcctctcctctcctctcccccgat c.*1020
. . . . . . g.43645
gtaccctcaaaaaaaaaaaaatgctaaccagttcttccattaagcctcggctgagtgagg c.*1080
. . . . . . g.43705
gaaagcccagcactgctgccctctcgggtaactcaccctaaggcctcggcccacctctgg c.*1140
. . . . . . g.43765
ctatggtaaccacactgggggcttcctccaagccccgctcttccagcacttccaccggca c.*1200
. . . . . . g.43825
gagtcccagagccacttcaccctgggggtgggctgtggcccccagtcagctctgctcagg c.*1260
. . . . . . g.43885
acctgctctatttcagggaagaagatttatgtattatatgtggctatatttcctagagca c.*1320
. . . . . . g.43945
cctgtgttttcctctttctaagccagggtcctgtctggatgacttatgcggtgggggagt c.*1380
. . . . . . g.44005
gtaaaccagaacttttcatctatttgaaggcgattaaactgtgtctaatgcaaacttcct c.*1440
. . . . . . g.44065
gcctcctccttcccccttccatttcaagaatatgtttgtgtgtagggtgggggtgggggt c.*1500
. . . . . . g.44125
tggaaggggttgcttgttactccccaaacttccattaaccagggcacccttgggttggag c.*1560
. . . . . . g.44185
aggtagttccaaactctccattgatctatactacattctgggctgaaggttttcttattc c.*1620
. . . . . . g.44245
tggactatgaagaaaggactttcaaggagatatagtgtgaacaggatcaggaaggtagag c.*1680
. . . . . . g.44305
ggattatatttacttaagagaacaagctctatattaggatattgttttgaagcagatgga c.*1740
. . . . . . g.44365
tgccgttaattgctaataagtcttagttattaacgcaggctcatcagggcccccccttgg c.*1800
. . . . . . g.44425
aaatatttgatcagtggtcttttacaagtgatggtatatatttctttctaggtggtgtat c.*1860
. . . . . . g.44485
aatcaagactccctatcaattcccatctcatacttcccagttaattggaattaatgaaat c.*1920
. . . . . . g.44545
ttggctgctcccagacctttttccatgtcttcctttttccttttaacaggatttaagttg c.*1980
. . . . . . g.44605
agcattcttgagagagagagagagagagagattggaagagagatggggagagactgactc c.*2040
. . . . . . g.44665
agatccctctcctgtctgcttctttttctggttctctcagttttttttcttgaagttata c.*2100
. . . . . . g.44725
aagccaaacctggagaatttgtaagttgttaggtttccccaggtaacttggcactcatat c.*2160
. . . . . . g.44785
gaaccccattttaataagtactcagcccatctcctctcctgggctcagatggctctctct c.*2220
. . . . . . g.44845
cctccctcaccttacctcaagtgttctcctgaggacccttaggtcagacagagaagcttt c.*2280
. . . . . . g.44905
ctctttctgatgggaagggtcaaagtggaaatctcttatctctagtgtgaaatgattttc c.*2340
. . . . . . g.44965
tgctttttcatactccctgccctctttcttttccttaataaatcttccatgtttaagatg c.*2400
. . . . . . g.45025
ttggcctgaagatctgtcccattcataccatgcaccagctgggactgtccctatctgatc c.*2460
. . . . . . g.45085
agaggggagattaaagaatcaatgttcccaggggaaaagggccttaaattgtttggtctt c.*2520
. . . . . . g.45145
ttcaatggctgacactgtctccaactctccccttcctccttcttcctcaagcttcctatg c.*2580
. . . . . . g.45205
caccctactttcccaggccaggatggttggcactgatcccaaacctctgggggcaggtgg c.*2640
. . . . . . g.45265
aaattggctgtggtgagccatttcttcatgtccattcagctctgaggccttcctggccct c.*2700
. . . . . . g.45325
agctgagatcatcatctcctcctttgcttttaccccaggagtgaggttgggttagaggtg c.*2760
. . . . . . g.45385
gattctgattccgtagcagctaaattccattctccctgtcctgaccatcctgcctttacc c.*2820
. . . . . . g.45445
cataaagcacccgttcctactgaccaaatctctttactttgttggagaaaaaaagtattt c.*2880
. . . . . . g.45505
tgtttttaaatctattttctaatttaaatgcaatttaatatgtaaatctctgcacttttg c.*2940
. . . . . . g.45565
tgtgagcctacaaatgtgtatgtgttgggggtttttcactctctggtatttcttaataaa c.*3000
. . . . . . g.45625
gaaatctttcttttggggggaagccaattaatgaaggagccttgaatggttttagaaata c.*3060
. . g.45647
cagggctgtctgtttctttgtg c.*3082
(downstream sequence)
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