(used for variant description)
(last modified August 21, 2022)
This file was created to facilitate the description of sequence variants on transcript NM_006887.4 in the ZFP36L2 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000002.11, covering ZFP36L2 transcript NM_006887.4.
(upstream sequence)
. . . . . g.5051
gagttccagcagtccgcgagctgccgtcggctccgcggggggggcgggccg c.-241
. . . . . . g.5111
ggcaccccggggcgcggaggagcgctcctcgcttctctccttcccccctgccgcactccg c.-181
. . . . . . g.5171
ccggaccctcccgccggcccgcgccgctgcactcgccctctcctctcgccccccggcaaa c.-121
. . . . . . g.5231
ctttcggcccctccccgcccctcgcccgttattcgtcgtggctcaagcccggccacgccg c.-61
. . . . . . g.5291
ccccaagggctcctcccgacctcccggcctgccgctccggccactgcgggatccagaaac c.-1
. . . . . | 02 . g.5863
ATGTCGACCACACTTCTGTCCGCCTTCTACGATGTCGACTTCTTGTGCAAG | ACAGAGAAA c.60
M S T T L L S A F Y D V D F L C K | T E K p.20
. . . . . . g.5923
TCCCTGGCCAACCTCAACCTGAACAACATGCTGGACAAGAAGGCGGTGGGGACGCCTGTG c.120
S L A N L N L N N M L D K K A V G T P V p.40
. . . . . . g.5983
GCCGCCGCCCCCAGCTCGGGCTTCGCGCCGGGATTCCTCCGACGGCACTCGGCCAGCAAC c.180
A A A P S S G F A P G F L R R H S A S N p.60
. . . . . . g.6043
CTGCATGCACTCGCCCACCCCGCGCCCAGCCCCGGCAGCTGCTCGCCCAAGTTCCCGGGC c.240
L H A L A H P A P S P G S C S P K F P G p.80
. . . . . . g.6103
GCCGCTAACGGCAGCAGCTGCGGCAGCGCGGCGGCCGGCGGTCCGACCTCCTACGGCACC c.300
A A N G S S C G S A A A G G P T S Y G T p.100
. . . . . . g.6163
CTTAAGGAGCCGTCGGGGGGCGGCGGCACAGCCCTGCTCAACAAGGAGAACAAATTCCGG c.360
L K E P S G G G G T A L L N K E N K F R p.120
. . . . . . g.6223
GACCGCTCGTTTAGCGAGAACGGCGATCGCAGCCAGCACCTCCTGCACCTGCAGCAGCAG c.420
D R S F S E N G D R S Q H L L H L Q Q Q p.140
. . . . . . g.6283
CAGAAGGGGGGCGGCGGCTCCCAGATCAACTCCACGCGCTACAAGACCGAGCTGTGCCGG c.480
Q K G G G G S Q I N S T R Y K T E L C R p.160
. . . . . . g.6343
CCCTTCGAGGAGAGCGGCACGTGCAAGTACGGCGAAAAGTGCCAGTTCGCGCATGGCTTC c.540
P F E E S G T C K Y G E K C Q F A H G F p.180
. . . . . . g.6403
CACGAGCTGCGCAGCCTGACTCGCCATCCGAAGTACAAGACCGAGCTGTGCCGCACCTTT c.600
H E L R S L T R H P K Y K T E L C R T F p.200
. . . . . . g.6463
CATACCATCGGCTTCTGCCCCTATGGGCCGCGCTGCCACTTCATCCACAACGCGGACGAG c.660
H T I G F C P Y G P R C H F I H N A D E p.220
. . . . . . g.6523
CGGCGGCCCGCGCCGTCGGGGGGCGCCTCCGGGGACCTGCGTGCCTTTGGCACGCGCGAT c.720
R R P A P S G G A S G D L R A F G T R D p.240
. . . . . . g.6583
GCGTTGCACCTGGGCTTCCCGCGGGAGCCGCGGCCCAAGTTGCACCACAGCCTCAGCTTC c.780
A L H L G F P R E P R P K L H H S L S F p.260
. . . . . . g.6643
TCGGGCTTCCCGTCGGGCCACCATCAGCCCCCGGGCGGCCTCGAGTCGCCGCTGCTGCTC c.840
S G F P S G H H Q P P G G L E S P L L L p.280
. . . . . . g.6703
GACAGCCCCACGTCGCGCACGCCGCCGCCGCCCTCCTGCTCTTCGGCCTCGTCCTGCTCC c.900
D S P T S R T P P P P S C S S A S S C S p.300
. . . . . . g.6763
TCCTCCGCCTCCTCCTGTTCCTCGGCCTCCGCGGCCTCCACGCCCTCGGGCGCCCCGACA c.960
S S A S S C S S A S A A S T P S G A P T p.320
. . . . . . g.6823
TGCTGCGCCTCCGCGGCGGCCGCGGCTGCGGCCGCTCTGCTGTACGGCACCGGGGGCGCC c.1020
C C A S A A A A A A A A L L Y G T G G A p.340
. . . . . . g.6883
GAGGACCTGCTGGCGCCGGGGGCCCCGTGCGCGGCCTGCTCGTCGGCCTCGTGCGCCAAC c.1080
E D L L A P G A P C A A C S S A S C A N p.360
. . . . . . g.6943
AACGCCTTCGCCTTCGGTCCGGAGCTCAGCAGCCTCATCACGCCGCTCGCCATCCAGACC c.1140
N A F A F G P E L S S L I T P L A I Q T p.380
. . . . . . g.7003
CACAACTTTGCCGCCGTGGCCGCCGCCGCCTACTACCGCAGTCAGCAGCAGCAGCAGCAG c.1200
H N F A A V A A A A Y Y R S Q Q Q Q Q Q p.400
. . . . . . g.7063
CAGGGCCTGGCGCCCCCCGCGCAGCCGCCGGCGCCGCCCAGCGCGACCCTCCCCGCCGGG c.1260
Q G L A P P A Q P P A P P S A T L P A G p.420
. . . . . . g.7123
GCCGCCGCACCTCCCTCGCCGCCCTTCAGCTTCCAGCTGCCGCGCCGCCTGTCCGACTCG c.1320
A A A P P S P P F S F Q L P R R L S D S p.440
. . . . . . g.7183
CCCGTGTTCGACGCGCCCCCCAGCCCCCCGGACTCGCTGTCGGACCGCGACAGCTACCTA c.1380
P V F D A P P S P P D S L S D R D S Y L p.460
. . . . . . g.7243
AGCGGCTCCCTGAGCTCCGGCAGCCTCAGCGGCTCTGAGTCTCCCAGCCTCGACCCTGGC c.1440
S G S L S S G S L S G S E S P S L D P G p.480
. . . . g.7288
CGCCGCCTGCCAATCTTCAGCCGCCTCTCCATCTCCGACGACTGA c.1485
R R L P I F S R L S I S D D X p.494
. . . . . . g.7348
ggcaagagggcgccagtgaggaggaagggaaggcggttcagagatgttggaggacacccc c.*60
. . . . . . g.7408
tcgccatctcgcccttgctgggggcacgggagtggggggggtgacatgggccctaggcag c.*120
. . . . . . g.7468
actgcaagcccgaccgagcacttggactcgaactctgtgccgggaggggcccccacccct c.*180
. . . . . . g.7528
cctttttcggtttcctcttgtctttttttttttatttttattacgaagtttcattctttt c.*240
. . . . . . g.7588
tgagcaaaaaagtcgaactttttctgttgaacaaaatattcacaacagggcagttgtgat c.*300
. . . . . . g.7648
acgaatagaacaaaaaaaaaaaaaaaacacttaaactttgttaggactccgatgagtttg c.*360
. . . . . . g.7708
ggacttcaggaaaaatcaacccagcaccagcagctaccaaccaccattccatctcttcac c.*420
. . . . . . g.7768
ttgaacagcattagttaagtccagatgtgggaacccttctcttggaagaagttcctaatt c.*480
. . . . . . g.7828
gtgtctcagaccggtgtaaacaaaccagccagccgccaccttgctaaacctataagcttt c.*540
. . . . . . g.7888
ttaaaatccaatatattctgccaagaatatgccttgatagttagccctcagcccataggt c.*600
. . . . . . g.7948
gttttttgttttttaacagaattatatatgtctgggggtgaaaaaacccttgcattccaa c.*660
. . . . . . g.8008
aggtccatactggttacttggtttcattgccaccacttagtggatgttcagtttagaacc c.*720
. . . . . . g.8068
attttgtctgctccctctggaagccttgcgcagagcttactttgtaattgttggagaata c.*780
. . . . . . g.8128
actgctgaatttttagctgttttgagttgattcgcaccactgcaccacaactcaatatga c.*840
. . . . . . g.8188
aaactatttaacttatttattatcttgtgaaaagtatacaatgaaaattttgttcatact c.*900
. . . . . . g.8248
gtatttatcaagtatgatgaaaagcaatagatatatattcttttattatgttaaattatg c.*960
. . . . . . g.8308
attgccattattaatcggcaaaatgtggagtgtatgttcttttcacagtaatatatgcct c.*1020
. . . . . . g.8368
tttgtaacttcacttggttattttattgtaaatgagtacaaaattcttaatttaagagat c.*1080
. . . . . . g.8428
tgtatgtaatatttatttcattaatttctttccttgtttacgtaaattttgaaagattgc c.*1140
. . . . . . g.8488
atgatttcttgacagaaatcgatcttgatgctgtggaagtagtttgaggaacatcctatg c.*1200
. . . . . . g.8548
agttttcttagaatgtataaaggttgtagcccatccaacttcaaagaaaaaaatgaccac c.*1260
. . . . . . g.8608
atactttgcaatcaggctgaaatgtggcatgcttttctaattccaactttataaactagc c.*1320
. . . . . . g.8668
aaaaaagtgtttgcttattccaccagttctactgtgacatactcgagtataaagacatgt c.*1380
. . . . . . g.8728
agcaataacggggagtggggggggagtctcacagtgcctttggaagggcccgaacttgcc c.*1440
. . . . . . g.8788
ttaaatcttcctcaaccaaataagtattttattagtgcttgagagaatctgaatgtagga c.*1500
. . . . . . g.8848
tgggttcaactgcacaaaaggaaaagatttttaccactttttttatatagatataaagtg c.*1560
. . . . . . g.8908
aagcaaccgccttagtgctgaaatatgtagtacatgaatatgccttgtttaattacagaa c.*1620
. . . . . . g.8968
aattccaaaacttgtactatttttttttccatgtagaaaggcaggaatgtctcctaagct c.*1680
. . . . . . g.9028
ttcctggacagcagatgaatgagcggtagctttagtttgtacgtaggtacagttggagca c.*1740
. . . . . . g.9088
ctatatgtactctctggactactttggacagaagtaggtttttgaatgtaacaagataag c.*1800
. . . . . . g.9148
tcaacttgagttgtaatatattttggggaatcagctcactacaaattgtgactgtaaaca c.*1860
. . . . . g.9205
ttgtactgtaaatgttttgtagttttcccccaataaaatttttgggaaaaaaaggta c.*1917
(downstream sequence)
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