(used for variant description)
(last modified May 28, 2014)
This file was created to facilitate the description of sequence variants on transcript NM_019110.3 in the ZKSCAN4 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000006.11, covering ZKSCAN4 transcript NM_019110.3.
(upstream sequence)
g.5004
ccaa c.-241
. . . . . . g.5064
agacatcctttggtgatacttactgtgggattcagagtggggtgcagaggacgaccctgc c.-181
. . . . . . g.5124
aaaggcacggactataagagagatctgtgcagctgcgcctcagggggtgtcctgggcccc c.-121
. . . . . . g.5184
tgggcatgacaggagggggaccacttgcagttctactggaaaatttaccacccttccaga c.-61
. . . . . . g.5244
atcctctgaagatatacaggtcgcaactagagtgagacccgagtactgccttgggtcaga c.-1
. . . . . . g.5304
ATGGCTAGAGAACCGAGAAAAAACGCAGCCCTGGACGCCCAGTCTGCAGAAGACCAGACG c.60
M A R E P R K N A A L D A Q S A E D Q T p.20
. . . . . . g.5364
GGGCTCCTGACCGTGAAGGTGGAGAAGGAGGAAGCCTCCGCCTTGACGGCGGAGGTGAGA c.120
G L L T V K V E K E E A S A L T A E V R p.40
. . . . . . g.5424
GCACCCTGCAGCCCTGCTCGGGGCCCCGAACGCTCCCGCCAGCGCTTCCGAGGCTTCCGC c.180
A P C S P A R G P E R S R Q R F R G F R p.60
. . . . . . g.5484
TACCCGGAGGCTGCGGGCCCCCGCGAGGCGTTGAGCCGGCTCCGAGAACTCTGCGGACAA c.240
Y P E A A G P R E A L S R L R E L C G Q p.80
. . . . . . g.5544
TGGCTGCAGCCTGAGATGCACAGCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAG c.300
W L Q P E M H S K E Q I L E L L V L E Q p.100
. . . . . . g.5604
TTCCTGACCATCCTGCCGGGGAATCTGCAGAGCTGGGTGCGGGAGCAGCATCCAGAGAGC c.360
F L T I L P G N L Q S W V R E Q H P E S p.120
. . . . . . g.5664
GGGGAGGAGGTGGTGGTGCTATTGGAGTATTTGGAGAGGCAGCTGGATGAGCCGGCGCCG c.420
G E E V V V L L E Y L E R Q L D E P A P p.140
| 02 . . . . . . g.7447
CAG | GTTCCCGTTGGTGACCAGGGGCAAGAACTGCTCTGTTGCAAGATGGCACTATTGACA c.480
Q | V P V G D Q G Q E L L C C K M A L L T p.160
. . . . . . g.7507
CAAACTCAAGGGTCTCAAAGTAGCCAGTGCCAGCCAATGAAGGCTCTGTTCAAGCATGAA c.540
Q T Q G S Q S S Q C Q P M K A L F K H E p.180
. . . | 03 . . . g.9104
TCTCTGGGATCCCAGCCCTTACACGATAGAG | TTCTCCAGGTTCCTGGGCTTGCCCAGGGA c.600
S L G S Q P L H D R V | L Q V P G L A Q G p.200
. . . . . | 04 . g.10138
GGGTGCTGCAGAGAAGATGCAATGGTAGCTTCCAGGCTCACTCCAGGGTCCCAG | GGTTTG c.660
G C C R E D A M V A S R L T P G S Q | G L p.220
. . . . . . g.10198
CTGAAAATGGAAGATGTGGCCCTGACCCTCACTCCTGGGTGGACACAGCTGGATTCATCT c.720
L K M E D V A L T L T P G W T Q L D S S p.240
. . . . . | 05 g.11251
CAGGTGAACCTCTACAGAGATGAAAAGCAGGAGAACCATAGCAGCCTGGTCTCCCTTG | GT c.780
Q V N L Y R D E K Q E N H S S L V S L G | p.260
. . . . . . g.11311
GGTGAAATACAGACTAAGAGCAGGGACTTGCCTCCAGTCAAGAAGCTTCCAGAAAAGGAG c.840
G E I Q T K S R D L P P V K K L P E K E p.280
. . . . . . g.11371
CATGGGAAGATATGCCACCTGAGGGAAGACATTGCCCAGATTCCTACACATGCAGAAGCT c.900
H G K I C H L R E D I A Q I P T H A E A p.300
. . . . . . g.11431
GGTGAACAGGAGGGCAGGTTACAAAGAAAGCAGAAAAATGCCATAGGGAGTAGGCGACAT c.960
G E Q E G R L Q R K Q K N A I G S R R H p.320
. . . . . . g.11491
TATTGCCATGAATGTGGAAAGAGTTTTGCTCAAAGTTCAGGCCTGACTAAACACAGGAGA c.1020
Y C H E C G K S F A Q S S G L T K H R R p.340
. . . . . . g.11551
ATCCACACTGGTGAGAAACCCTATGAATGTGAAGACTGTGGAAAGACCTTCATTGGGAGC c.1080
I H T G E K P Y E C E D C G K T F I G S p.360
. . . . . . g.11611
TCTGCCCTTGTCATTCATCAGAGAGTCCACACTGGTGAGAAGCCATATGAGTGTGAAGAA c.1140
S A L V I H Q R V H T G E K P Y E C E E p.380
. . . . . . g.11671
TGTGGTAAGGTCTTCAGTCACAGCTCAAACCTTATCAAACACCAGAGAACCCACACTGGG c.1200
C G K V F S H S S N L I K H Q R T H T G p.400
. . . . . . g.11731
GAGAAGCCCTATGAGTGTGATGACTGTGGGAAGACCTTCAGCCAGAGCTGCAGCCTCCTT c.1260
E K P Y E C D D C G K T F S Q S C S L L p.420
. . . . . . g.11791
GAACATCACAAAATTCATACTGGGGAGAAGCCATACCAGTGCAATATGTGTGGCAAAGCC c.1320
E H H K I H T G E K P Y Q C N M C G K A p.440
. . . . . . g.11851
TTTAGGCGGAATTCACATCTCCTGAGACATCAGAGGATTCATGGTGATAAAAATGTTCAG c.1380
F R R N S H L L R H Q R I H G D K N V Q p.460
. . . . . . g.11911
AATCCTGAGCACGGGGAGTCCTGGGAAAGTCAGGGTAGGACGGAAAGCCAGTGGGAAAAT c.1440
N P E H G E S W E S Q G R T E S Q W E N p.480
. . . . . . g.11971
ACTGAGGCTCCCGTGTCTTATAAATGTAATGAGTGTGAGAGAAGTTTCACACGGAATAGA c.1500
T E A P V S Y K C N E C E R S F T R N R p.500
. . . . . . g.12031
AGTCTTATTGAACATCAGAAAATCCACACTGGTGAGAAACCCTATCAGTGTGACACATGT c.1560
S L I E H Q K I H T G E K P Y Q C D T C p.520
. . . . . . g.12091
GGAAAAGGTTTCACTCGAACTTCATACCTTGTTCAACATCAGAGAAGCCATGTAGGGAAA c.1620
G K G F T R T S Y L V Q H Q R S H V G K p.540
. g.12109
AAAACTCTTTCACAGTGA c.1638
K T L S Q X p.545
. . . . . . g.12169
cccatggtattcatgccaacattggtgctcatttgtcactgaactgaagccaccctggag c.*60
. . . . . . g.12229
cccttaatggttacagaaattgtggaccagggctttatttaccactatacatcatcgggt c.*120
. . . . . . g.12289
attagaaaatgtagtctggctgagacgatgagttatcttctacattctagaaagtgattg c.*180
. . . . . . g.12349
gaagaagtcatttgataagaggccatgggagagtggtctggaagttgtaggacctaaaat c.*240
. . . . . . g.12409
agtttgttctcacccagtgtatttaaatggccttctggacttgttaattgccctcagcca c.*300
. . . . . . g.12469
gcactttaggacatctggttggatggctctgatgtggggggctgctgctctgaccattca c.*360
. . . . g.12513
ttttgcctctaatgaatctttcacaaattggtcagatccatgag c.*404
(downstream sequence)
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