(used for variant description)
(last modified December 22, 2018)
This file was created to facilitate the description of sequence variants on transcript NM_152626.2 in the ZNF92 gene based on a coding DNA reference sequence following the HGVS recommendations.
The sequence was taken from NC_000007.13, covering ZNF92 transcript NM_152626.2.
(upstream sequence)
. . g.5023
gtctctcgctgcagccggcgctc c.-121
. . . . . . g.5083
cacgtctagtcttcactgctctgcgtcctgtgctgataaaggctcgccgctgtgaccctg c.-61
. . . . . . g.5143
ttacctgcaagaacttggaggttcacagctaagacgccaggaccccctggaagcctagaa c.-1
| 02 . . . . . . g.19104
ATG | GGACCACTGACATTTAGGGATGTGAAAATAGAATTCTCTCTAGAGGAATGGCAATGC c.60
M | G P L T F R D V K I E F S L E E W Q C p.20
. . . . . . g.19164
CTGGACACTGCGCAGCGGAATTTATATAGAGATGTGATGTTAGAGAACTACAGAAACCTG c.120
L D T A Q R N L Y R D V M L E N Y R N L p.40
. | 03 . . . . . g.20001
GTCTTCCTTG | GTATTGCTGTCTCTAAGCCAGACCTGATCACCTGGCTGGAGCAAGGAAAA c.180
V F L G | I A V S K P D L I T W L E Q G K p.60
. . . . | 04 . . g.29500
GAGCCCTGGAATCTGAAGAGACATGAGATGGTAGACAAAACCCCAG | TTATGTGTTCTCAT c.240
E P W N L K R H E M V D K T P V | M C S H p.80
. . . . . . g.29560
TTTGCCCAAGATGTTTGGCCAGAGCACAGCATAAAAGATTCTTTCCAAAAAGTGATACTG c.300
F A Q D V W P E H S I K D S F Q K V I L p.100
. . . . . . g.29620
AGAACATATGGAAAATATGGACATGAGAATTTACAGCTAAGAAAAGACCATAAAAGTGTG c.360
R T Y G K Y G H E N L Q L R K D H K S V p.120
. . . . . . g.29680
GATGCATGTAAGGTGTACAAAGGAGGTTATAATGGACTTAACCAGTGTTTGACAACTACT c.420
D A C K V Y K G G Y N G L N Q C L T T T p.140
. . . . . . g.29740
GACAGCAAGATATTTCAGTGTGATAAATATGTGAAAGTCTTTCATAAATTTCCAAATGTA c.480
D S K I F Q C D K Y V K V F H K F P N V p.160
. . . . . . g.29800
AATAGAAATAAGATAAGACATACTGGAAAGAAACCTTTCAAATGTAAAAACCGTGGCAAA c.540
N R N K I R H T G K K P F K C K N R G K p.180
. . . . . . g.29860
TCATTTTGCATGCTTTCACAATTAACTCAACATAAGAAAATTCATACTAGAGAGTATTCT c.600
S F C M L S Q L T Q H K K I H T R E Y S p.200
. . . . . . g.29920
TACAAATGTGAAGAATGTGGTAAAGCCTTTAACTGGTCCTCAACCCTTACTAAACATAAG c.660
Y K C E E C G K A F N W S S T L T K H K p.220
. . . . . . g.29980
ATAATTCATACTGGAGAAAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCGG c.720
I I H T G E K P Y K C E E C G K A F N R p.240
. . . . . . g.30040
TCCTCAAATCTTACTAAACATAAAATAATTCATACTGGAGAGAAACCCTACAAATGTGAA c.780
S S N L T K H K I I H T G E K P Y K C E p.260
. . . . . . g.30100
GAATGTGGCAAAGCTTTTAACCGGTCCTCAACCCTTACTAAACATAAAAGAATTCATACA c.840
E C G K A F N R S S T L T K H K R I H T p.280
. . . . . . g.30160
GAAGAGAAACCCTACAAATGTGAAGAATGTGGCAAGGCCTTTAACCAGTTCTCGATTCTT c.900
E E K P Y K C E E C G K A F N Q F S I L p.300
. . . . . . g.30220
AATAAACATAAGAGAATTCATATGGAAGATAAACCCTACAAATGTGAAGAATGTGGCAAA c.960
N K H K R I H M E D K P Y K C E E C G K p.320
. . . . . . g.30280
GCCTTTAGAGTATTCTCAATTCTTAAAAAACATAAGATAATCCATACTGGGGAAAAACCA c.1020
A F R V F S I L K K H K I I H T G E K P p.340
. . . . . . g.30340
TACAAATGTGAAGAATGTGGCAAAGCCTTTAACCAGTTCTCAAACCTTACTAAACATAAG c.1080
Y K C E E C G K A F N Q F S N L T K H K p.360
. . . . . . g.30400
ATAATTCATACTGGAGAGAAACCCTACAAATGTGATGAATGTGGCAAAGCCTTTAACCAG c.1140
I I H T G E K P Y K C D E C G K A F N Q p.380
. . . . . . g.30460
TCCTCAACCCTTACTAAACATAAAAGAATTCATACGGGAGAAAAACCCTACAAATGTGAA c.1200
S S T L T K H K R I H T G E K P Y K C E p.400
. . . . . . g.30520
GAATGTGGCAAAGCTTTTAAACAGTCCTCAACCCTTACTGAACATAAGATAATTCATACT c.1260
E C G K A F K Q S S T L T E H K I I H T p.420
. . . . . . g.30580
GGAGAGAAACCCTACAAATGTGAAAAATGTGGCAAGGCCTTTAGCTGGTCCTCAGCTTTT c.1320
G E K P Y K C E K C G K A F S W S S A F p.440
. . . . . . g.30640
ACTAAACATAAGAGAAATCATATGGAAGATAAACCCTACAAATGTGAAGAATGTGGCAAA c.1380
T K H K R N H M E D K P Y K C E E C G K p.460
. . . . . . g.30700
GCCTTTAGTGTATTCTCAACCCTTACTAAACATAAAATAATTCATACTAGAGAAAAACCC c.1440
A F S V F S T L T K H K I I H T R E K P p.480
. . . . . . g.30760
TACAAATGTGAAGAATGTGGCAAAGCCTTTAACCAGTCCTCAATTTTTACTAAACATAAG c.1500
Y K C E E C G K A F N Q S S I F T K H K p.500
. . . . . . g.30820
ATAATTCACACTGAAGGGAAATCCTACAAATGTGAAAAATGTGGCAATGCTTTTAACCAG c.1560
I I H T E G K S Y K C E K C G N A F N Q p.520
. . . . . . g.30880
TCCTCAAACCTTACTGCACGTAAGATAATTTATACTGGAGAGAAACCCTACAAATATGAA c.1620
S S N L T A R K I I Y T G E K P Y K Y E p.540
. . . . . . g.30940
GAATGTGACAAAGCCTTTAACAAGTTCTCAACCCTTATTACACATCAGATAATTTATACT c.1680
E C D K A F N K F S T L I T H Q I I Y T p.560
. . . . . . g.31000
GGAGAGAAACCCTGCAAACATGAATGTGGCAGAGCCTTTAACAAATCCTCAAATTATACT c.1740
G E K P C K H E C G R A F N K S S N Y T p.580
. . g.31021
AAAGAGAAACTACAAACCTGA c.1761
K E K L Q T X p.586
. . . . . . g.31081
aagatgtgacaatgattttcactacacctcaaacttttctaaacataaaccatattggtg c.*60
. . . . . . g.31141
ccctagaaatgtgaggaatatgacaaggactttaaatggttgtcacgcttgattgtaggt c.*120
. . . . . . g.31201
aagataatttatattggagaaaaatcctccaagtatgaagaatgtggcaaacttttaacc c.*180
. . . . . . g.31261
aatcctcacaccttattgcacaggaaagcatttatacttgagaaaaattgtataaagaat c.*240
. . . . . . g.31321
atggaaaagccatttatatctgctcacatgtaaaaacatcagttcatacttaataaaatg c.*300
. . . . . . g.31381
caattaccgtcaaatctttcagaaaatataagcctttaatacgaggaagagtattcttaa c.*360
. . . . . . g.31441
gatgaacattacaaatagaaagagggttgtagtacctttagttttatgatagatcttatt c.*420
. . . . . . g.31501
gtacacattttgtaccagaggaaaaccctaaagcattagttgctcaaactttgttcgaca c.*480
. . . . . . g.31561
tcagggaatttgtattggagaaaaaccctgcaaatgtaataaatatggaaaaacattttt c.*540
. . . . . . g.31621
tcaaaaactacagcttggaaaacatcagagagttcatactaaaatatatttttgcagatg c.*600
. . . . . . g.31681
cagtaaatatgaaaaatatttaatcccaaattaagtctatgtaaatatcagaattcacag c.*660
. . . . . . g.31741
tagaaatcataaggcataaggcactgatacttcagacattacactaaattagagtgttga c.*720
. . . . . . g.31801
gtataggagatccaaaactaaaattgttaggtaagttatttatatataactttaaaagaa c.*780
. . . . . . g.31861
gtagaagattttttggagatttataattacattcaaagtatacttttttcttgaaaaaaa c.*840
. . . . . . g.31921
ttacagattttttgaaaagcaattgatgtaatttaactctcaaattcatgtttttcttca c.*900
. . . . . . g.31981
ttcctattatattcacatgtgaaagcaagtgatctgttgttgctgaatcagagatatgag c.*960
. . . . . . g.32041
agattcttttttataggtgggcattatttatgcccctttctgtggaagagtaagaaaatt c.*1020
. . . . . . g.32101
aaaatacaagatgcatgaggaaaatgtagagatgctctttgtgattaacttagaatatta c.*1080
. . . . . . g.32161
agtgctacttgaggtacatgttcagactaacattcttttgcagtatagtgagaaaaaaac c.*1140
. . . . . . g.32221
attttaaaattaattatcattttgttgattgtgcttttatgtaataaaatgcagtacttt c.*1200
. g.32231
aaaacattta c.*1210
(downstream sequence)
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