Screening #0000111851

Individual ID 00111386
Template DNA
Technique MLPA;SEQ
Tissue -
Remarks -
Variants found? 1
Owner name Johan den Dunnen


Genes screened


AscendingSymbol     

Gene     

Chr     

Band

Transcripts     

Variants     

Unique variants     

Last updated     

Associated with diseases
EPCAM epithelial cell adhesion molecule 2 p21 1 226 89 2019-03-27 DIAR-5, HNPCC, HNPCC-1 (Lynch), HNPCC-8



Variants found

1 entry on 1 page. Showing entry 1.
Legend  

Chr     

Allele     

Effect     

AscendingDNA change (genomic) (hg19)     

DNA change (hg38)     

Published as     

ISCN     

DB-ID     

Variant remarks     

Reference     

ClinVar ID     

dbSNP ID     

Origin     

Segregation     

Frequency     

Re-site     

VIP     

Methylation     

Owner     

Gene     

Codon change     

IDbase Accession Number     

VariO/DNA     

VariO/Protein     

VariO/RNA     

Exon     

DNA change (cDNA)     

Haplotype     

ClassClinical     

RNA change     

Protein     

P-domain     

Exon_old     

DNA/Legacy     

Function/GVS     

Predict/AGVGD     

Predict/Grantham     

Predict/MutationTaster     

Predict/PolyPhen     

Predict/PolyPhenScore     

Predict/SIFT     

Predicted     

Type/DNA     

Conservation     

CpG     

Enzyme activity     

mRNA level     

Predict/CADD     

Predict/Splice     

Protein level     
2 Parent #1 +/. g.47610843_47615751del g.47383704_47388612del - - EPCAM_000001 4909 bp deleteion detected using MSH6 MLPA, unrelated families, shared founder haplotype; not in 194 control chromosomes PubMed: Ligtenberg 2009 - - Germline yes - - 0 - Johan den Dunnen EPCAM, MSH2 - - - - - 7i_9_, _1 NM_002354.2:c.859-1462_*1999del, NM_000251.2:c.-19488_-14580del - pathogenic r.[859_*405delinsNM_000251.2:c.212_*272, 859_*405delinsNM_000251.2:c.-4237_-4127ins212_*272], r.? p.[Val287GlufsX13, Val287_Ala314delins37insMSH2:Ala72_Thr934], p.? - - - - - - - - - - - - - - - - - - -
Legend