Variant #0000000123 (NC_000001.10:g.5940243G>A, NPHP4(NM_015102.4):c.2542C>T)

Individual ID 00000042, 00398532
Chromosome 1
Allele Unknown
Affects function (as reported) Effect unknown
Affects function (by curator) Not classified
Classification method -
Clinical classification VUS
DNA change (genomic) (Relative to hg19 / GRCh37) g.5940243G>A
DNA change (hg38) g.5880183G>A
Published as -
ISCN -
DB-ID NPHP4_000002 See all 9 reported entries
Variant remarks -
Reference -
ClinVar ID -
dbSNP ID -
Origin Germline
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.0155 View details
Owner Gerard C.P. Schaafsma
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Gerard C.P. Schaafsma
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
NPHP4 NM_015102.4 ?/. - c.2542C>T r.(?) p.(Arg848Trp)
HUWE1 NM_031407.5 +/. _1_84_ c.-426_*1213{2} r.? p.?



Screenings


AscendingScreening ID     

Template     

Technique     

Tissue     

Remarks     

Genes screened     

Variants found     

Owner     
0000000042 DNA SEQ-NG - - ATP7B, DPYD, ETFB, GLB1, IGHMBP2, JAK3, NPHP4, NPHS1, POLG, QARS, SERPINA1, SLC26A2, SMPD1 13 Global Variome, with Curator vacancy
0000399778 DNA arrayCGH - - - 2 Johan den Dunnen