Variant #0000016429 (NC_000006.11:g.41127528A>G, NC_000006.11(NM_018965.2):c.482+2T>C (TREM2))

Chromosome 6
Allele Both (homozygous)
Affects function (as reported) Affects function
Affects function (by curator) Affects function
Classification method -
Clinical classification pathogenic
DNA change (genomic) (Relative to hg19 / GRCh37) g.41127528A>G
DNA change (hg38) g.41159790A>G
Published as 482+2T>C
ISCN -
DB-ID TREM2_000010
Variant remarks 1 Italian PLOSL family (hom) and 1 Japanese PLOSL family (hom)
Reference PubMed: Paloneva et al. 2002, PubMed: Numasawa et al. 2011
ClinVar ID -
dbSNP ID -
Origin SUMMARY record
Segregation yes
Frequency 0/100 CON
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 1.0E-5 View details
Owner Anne Polvi
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Anne Polvi
Date created 2012-11-15 13:58:52 +01:00 (CET)
Date last edited 2017-05-05 19:04:32 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
TREM2 NM_018965.2 +/+ 3i c.482+2T>C r.[391_482del, 391_677del, 40_482del, 40_677del] p.[Asp131_Arg161del, Asp131Alafs*59, Glu14_Arg161del, Glu14Alafs*59]


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