Variant #0000016692 (NC_000014.8:g.(?_23248002)_(23249260_?)del, NC_000014.8(NM_001126105.2):c.500-?_770+?del (SLC7A7))

Chromosome 14
Allele Parent #1
Affects function (as reported) Affects function
Affects function (by curator) Affects function
Classification method -
Clinical classification pathogenic
DNA change (genomic) (Relative to hg19 / GRCh37) g.(?_23248002)_(23249260_?)del
DNA change (hg38) g.22778793_22780051del
Published as IVS3-IVS5del9.7kb (intron 3 - intron 5) : exon 4 and 5 deletion in cDNAIVS3-IVS5del9.7kb (intron 3 - intron 5) : exon 4 and 5 deletion in cDNAIVS3-IVS5del9.7kb (intron 3 - intron 5) : exon 4 and 5 del
ISCN -
DB-ID SLC7A7_000014
Variant remarks 2 Japanese LPI families (1 hom and 1 com-het), 1 Japanese LPI family (com-het); Deletion from intron 3 to intron 5 > deletion of exons 4 and 5
Reference PubMed: Shoji et al. 2002, PubMed: Kamada et al. 2001
ClinVar ID -
dbSNP ID -
Origin SUMMARY record
Segregation yes
Frequency 0/50 JAP CON
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) Retrieve
Owner Anne Polvi
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Anne Polvi
Date created 2012-12-04 16:25:21 +01:00 (CET)
Date last edited 2018-03-30 11:49:20 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
SLC7A7 NM_001126105.2 +/+ 31_5i c.500-?_770+?del r.500_770del p.(Cys167*)


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