Variant #0000016707 (NC_000014.8:g.23245147T>A, NC_000014.8(NM_001126105.2):c.895-2A>T (SLC7A7))

Chromosome 14
Allele Both (homozygous)
Affects function (as reported) Affects function
Affects function (by curator) Affects function
Classification method -
Clinical classification pathogenic
DNA change (genomic) (Relative to hg19 / GRCh37) g.23245147T>A
DNA change (hg38) g.22775938T>A
Published as genomic change 1181-2A>T leads to alternative splicing: c.1181delACTTTTGCAG
ISCN -
DB-ID SLC7A7_000030 See all 2 reported entries
Variant remarks Finnish Major LPI mutation: 35 Finnish LPI patients (hom); Functional analysis: loss of function
Reference PubMed: Torrens et al. 1999, PubMed: Bosrsani et al. 1999
ClinVar ID -
dbSNP ID rs146582474
Origin SUMMARY record
Segregation yes
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00046 View details
Owner Anne Polvi
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Anne Polvi
Date created 2012-12-04 16:25:21 +01:00 (CET)
Date last edited 2017-05-05 19:04:32 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
SLC7A7 NM_001126105.2 +/+ i06 c.895-2A>T r.895_904delacuuuugcag p.Thr299Ilefs*10


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