Variant #0000016717 (NC_000014.8:g.23243622_23243625del, NM_001126105.2:c.1185_1188del (SLC7A7))

Chromosome 14
Allele Both (homozygous)
Affects function (as reported) Affects function
Affects function (by curator) Affects function
Classification method -
Clinical classification pathogenic
DNA change (genomic) (Relative to hg19 / GRCh37) g.23243622_23243625del
DNA change (hg38) g.22774413_22774416del
Published as 1425delTTCT: Frameshift after Leu395, termination at codon 516; 1471delTTCT: Frameshift after L395; c.1185_1188delTTCT: p.S396fsX121
ISCN -
DB-ID SLC7A7_000040 See all 2 reported entries
Variant remarks 1 Italian, 1 Tunisian, 1 German and 1 Spanish LPI family (all hom) and 1 French-Algerian LPI family 1 (com-het); Functional studies confirmed disease-causative role
Reference PubMed: Sperandeo et al. 2000, PubMed: Mykkanen et al. 2000, PubMed: Sperandeo et al. 2005, PubMed: Font-Llitjos et al. 2009
ClinVar ID -
dbSNP ID -
Origin SUMMARY record
Segregation yes
Frequency 0/50 CON
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) Retrieve
Owner Anne Polvi
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Anne Polvi
Date created 2012-12-04 16:25:21 +01:00 (CET)
Date last edited 2020-07-04 15:16:47 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
SLC7A7 NM_001126105.2 +/+ 09 c.1185_1188del r.(?) p.(Ser396Leufs*122)


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