Variant #0000016735 (NC_000002.11:g.136564701A>T, NM_002299.2:c.4170T>A (LCT))

Chromosome 2
Allele Unknown
Affects function (as reported) Affects function
Affects function (by curator) Affects function
Classification method -
Clinical classification pathogenic
DNA change (genomic) (Relative to hg19 / GRCh37) g.136564701A>T
DNA change (hg38) g.135807131A>T
Published as c.4170T>A: Y1390X
ISCN -
DB-ID LCT_000006
Variant remarks Finnish major mutation (FINMajor) for lactase deficiency, congenital: 26 Finnish families (most hom) with the disease
Reference PubMed: Kuokkanen et al. 2006, PubMed: Torniainen et al. 2009
ClinVar ID -
dbSNP ID rs121908936
Origin SUMMARY record
Segregation yes
Frequency 4/140 NIL CON
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00089 View details
Owner Anne Polvi
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Anne Polvi
Date created 2012-12-10 17:13:21 +01:00 (CET)
Date last edited 2019-07-02 08:01:36 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
LCT NM_002299.2 +/+ 9 c.4170T>A r.(4170u>a) p.(Tyr1390*)


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