Variant #0000016930 (NC_000019.9:g.36321958G>A, NM_004646.3:c.3478C>T (NPHS1))

Chromosome 19
Allele Unknown
Affects function (as reported) Affects function
Affects function (by curator) Affects function
Classification method -
Clinical classification pathogenic
DNA change (genomic) (Relative to hg19 / GRCh37) g.36321958G>A
DNA change (hg38) g.35831056G>A
Published as exon 27, nt3478(C>T): R1160X; c.C3478T: p.R1160X
ISCN -
DB-ID NPHS1_000117 See all 4 reported entries
Variant remarks 10 Maltese (hom), 2 Indian (hom), 4 Pakistani (hom) and 1 Bangladeshi (hom) CNF patient. 2 European (com-het), 1 Serbian (com-het) and 1 Asian CNF patient (com-het). Also 1 Arabic (hom), 1 Italian (hom) and 1
Reference PubMed: Lenkkeri at al. 1999, PubMed: Koziell et al. 2002, PubMed: Heeringa et al. 2008, PubMed: Schoeb et al. 2010, PubMed: Abid et al. 2012
ClinVar ID -
dbSNP ID -
Origin SUMMARY record
Segregation yes
Frequency 0/30 CON
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.0001 View details
Owner Anne Polvi
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Anne Polvi
Date created 2012-12-10 17:38:49 +01:00 (CET)
Date last edited 2017-05-05 19:04:32 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
NPHS1 NM_004646.3 +/+ 27 c.3478C>T r.(3478c>u) p.(Arg1160*)


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