Variant #0000039968 (NC_000006.11:g.18143955C>G, NM_000367.2:c.238G>C (TPMT))

Chromosome 6
Allele Unknown
Affects function (as reported) Affects function
Affects function (by curator) Not classified
Classification method -
Clinical classification NA
DNA change (genomic) (Relative to hg19 / GRCh37) g.18143955C>G
DNA change (hg38) g.18143724C>G
Published as -
ISCN -
DB-ID TPMT_000020 See all 22 reported entries
Variant remarks expression cloning COS7-cells, reduced protein expression, reduced activity in 6-TG S-methylation
Reference PubMed: Ujiie 2008
ClinVar ID -
dbSNP ID rs1800462
Origin In vitro (cloned)
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) 0.00172 View details
Owner Johan den Dunnen
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by Johan den Dunnen
Date created 2012-09-23 20:52:13 +02:00 (CEST)
Date last edited 2020-07-14 22:00:02 +02:00 (CEST)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

Haplotype     

RNA change     

Protein     
TPMT NM_000367.2 +/. 4 c.238G>C TPMT*2 r.(?) p.Ala80Pro


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