Variant #0000297259 (NC_000001.10:g.46655592del, NM_001243766.1:c.1719del (POMGNT1))

Chromosome 1
Allele Unknown
Affects function (as reported) Probably affects function
Affects function (by curator) Not classified
Classification method -
Clinical classification likely pathogenic
DNA change (genomic) (Relative to hg19 / GRCh37) g.46655592del
DNA change (hg38) g.46189920del
Published as POMGNT1(NM_001243766.2):c.1719delC (p.H573Qfs*50)
ISCN -
DB-ID POMGNT1_000004 See all 3 reported entries
Variant remarks VKGL data sharing initiative Nederland
Reference -
ClinVar ID -
dbSNP ID -
Origin CLASSIFICATION record
Segregation -
Frequency -
Re-site -
VIP -
Methylation -
Average frequency (gnomAD v.2.1.1) Retrieve
Owner VKGL-NL_Groningen
Database submission license Creative Commons Attribution-NonCommercial-ShareAlike 4.0 InternationalCreative Commons License
Created by VKGL-NL_Groningen
Date created 2018-01-15 20:58:59 +01:00 (CET)
Date last edited 2023-01-11 15:44:22 +01:00 (CET)
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Variant on transcripts


Gene     

AscendingTranscript     

Affects function     

Exon     

DNA change (cDNA)     

RNA change     

Protein     
LURAP1 NM_001013615.2 +?/. - c.-13507del r.(?) p.(=)
POMGNT1 NM_001243766.1 +?/. - c.1719del r.(?) p.(His573GlnfsTer51)
TSPAN1 NM_005727.3 +?/. - c.*4387del r.(?) p.(=)
POMGNT1 NM_017739.3 +?/. - c.1719del r.(?) p.(His573GlnfsTer61)


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